mRNA_P-littoralis_Contig155.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig155.8.1
Unique NamemRNA_P-littoralis_Contig155.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig155.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig155contigP-littoralis_Contig155:17717..22736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size172
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.7391534-CDS-P-littoralis_Contig155:17716..178051680789739.7391534-CDS-P-littoralis_Contig155:17716..17805Pylaiella littoralis U1_48CDSP-littoralis_Contig155 17717..17805 -
1680789739.7514246-CDS-P-littoralis_Contig155:22653..226991680789739.7514246-CDS-P-littoralis_Contig155:22653..22699Pylaiella littoralis U1_48CDSP-littoralis_Contig155 22654..22699 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.7616005-UTR-P-littoralis_Contig155:22699..227361680789739.7616005-UTR-P-littoralis_Contig155:22699..22736Pylaiella littoralis U1_48UTRP-littoralis_Contig155 22700..22736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig155.8.1prot_P-littoralis_Contig155.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig155 17717..22699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig155.8.1

>prot_P-littoralis_Contig155.8.1 ID=prot_P-littoralis_Contig155.8.1|Name=mRNA_P-littoralis_Contig155.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=45bp
MCCPSSPPARAHARSGLPTATSSKPSPAATRLRPPFSESQAPLP*
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mRNA from alignment at P-littoralis_Contig155:17717..22736-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig155.8.1 ID=mRNA_P-littoralis_Contig155.8.1|Name=mRNA_P-littoralis_Contig155.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5020bp|location=Sequence derived from alignment at P-littoralis_Contig155:17717..22736- (Pylaiella littoralis U1_48)
CAGCTGAACGAGGTTGAACAACCAGGGATACTTGGCCATGTGTTGCCCGT
CGTCGCCGCCGGCAAGGGCTCATGCCCGATCAGGCACGTGTTCGTGATTT
GAACATTTCTGATTTTGTTTCAGTGTTTCTTGTACATAATGTGATATGTG
TCGCGTGCAGACGCGGTGGGGATCGAGGAAGGATTTCGAGGTTGCCAGTA
CTCCTCCATAAAACTGCGAGGTATTTCGAGGTTGCCAGTACTCCTCCATA
AAACTGCGAGGTATTTCGAGGTTGCCAGTAACCCTCCACAAAACTGCGAG
GTTTTTCCGTTCACATAGCGCGAAGCATTTCGTTCACACAGCGAATCGAG
TCACACACTCTGGGTACATACACACTGCCCACAACAATATATCCCGTTCA
CACAGCGAAGAATCGAGGGTACTCTGGGTACATACTGCCCACAACCATAT
ATCCCGGCCGGGTACGGTCCAGCTCCACCCCGTCCGCGGGGCGTTGAAGC
TCGCGGGGTATTTTGTATTTTGTATTCGGCCCAGTTAAACTGCGCGCTCA
ACAATGTCACGGTTACCAGTCACCCTCAAACTGCGAGTTCCAACGATACG
GTTGTCAGTTGCCAATTCAAGCTAAAACTGAACTGACGGGAGTCAAAAAT
TTGCGCGGGAGAAGAGACTACTGTATGCGTACAAGAGTACAGCAGTGTAA
GACGAGCTTGCGGAGTCTGTTTCAACACACAGCTGTAGCAAAGGAGTTTG
AGATGCTGTAAAAAATAAAAAATAAAATAAAGGAAAATTAAATTCCGTAT
TAAAATGCATGTTTGGAATAGGAGTGTTTGCGCAAAAGGATTTATTATCT
CCAATATCCTTTCTTGGTTCCCCCGAGGTTTCCCCGAGAGGCTCCGTGAC
TGCAACGGAAAGGATTTATTTTCTCAAATTCCGGAAAATCCCGGAAAGAA
AGGATATTTGGAAAGAATATTTGATCTGCCAAGCGAGCCCATGTCGGCAC
ATCACCTGATTGGCCAACTAATCCCGGCATCATTCCCGAGCCATGCCGCG
GCTGAGGGCATGCTGCTACGCTGCCACCCCTCTCTGCTGGCAAGACTACG
AGGAGAGCCATGCGTAGGCGCTAGCAAGACTAGACGATGGAAACGACAGG
ACGACCCAACGTCAGAGATGTTCAAATCAATCGGCGCTATGGCGCACTTT
GCGCTGGTGAGCGAGTGCGGATCAGGCAGTTGAAGCGGCAGGCGCTGGCC
TTGTTCAACGCTTCGGCACACGAGGCAGATGAGGAGCAGGCACGGAAGTT
GAGGGACCTTGGTGTCGTTCTCGTCGGTCGCGCGTGTCGTATGAGGCACG
ATAGGACGATTCTCCCTCCGACCATCCGGGGAGGACACCTGTCATCGACG
GCATCACCGACAACGAAGCGTGGACAAACTACCGGAGCCGAAAGCCGGAG
CTACGACGTTTGTTCCGGGCGTTCAATTTCCCGGAGTGGGTTCGCCCGGT
CAATCGCGGCCGCTACCCCAGCGAGAGCGCCTTCCTCCTTCTCATTAGGC
GCATGAGGTAAGCTGTGTTCTATGCCGTCCAGTAGACAAAGTGTTCGTTG
TACAGGTCACACTCGACAGCGTGCCGTTACAACATCCACGCCTCAGCTCA
TAAACTCGAATTGTACAGCTGTGTATAGTACAGTTATACAGCAGTCGTGC
ATATATACTGCTGTATAACTAAAGGGATGACAACACACAAACAATACGAA
GTAAATAGCGGCACATGATTTGATCGCGTTGAAACACGAGTCGTGTACTT
TGATGAAGACAAAGTCATGATCATATGACACAAATGTATAGGTAAAGCTG
CCGTCGTTTCATATCATACCACGTACGCTGCAGCTGCCCTTCTCGTACAA
CGTTCTGGTACAGCAGTAGCCCGCCTTACAACACGAAGGTTTCCCTGGTC
ACGCTACTTTTCCCTGGTCTCCAAAATGCGATTGCGCTTAAAAAAAACGC
GTGGTACAGCAGAAACGTCTGCAAAATACTATAATGCATAGAACGCACGG
CAATACTGGGGCGTACACAGAGTGCACAGCCCTCATTCTATAATAACTTC
ATTGGTAACCCATGGTAACCTACCAAAGGCATGTCGCCGGTGATTTTGTA
TTGCATACCTCATTTGAAGCGATTCGACACATGCAACCCTACTCGTATAC
TCGTACAGCAGTCGCATGGATGCATTTCGTGTCAAACAAACAGCAGTAAA
AGCCCGCACTTCTTACTATTTTTTTGCCGGAAACGCCCGACTTCGAGGCG
CACGAAAATGGTAGCTTTTGTTTACCTCTCGCTTCGTGTTTCCCCTCACC
TGTGGCGTGCTCCACCTCAGGTATCCTGGGCGGTGGCATGACTTACAGGT
GGAATTCGGCCGAGAGTACACGCAGTTGTCGCGAATTTTCAACGTTGTCA
TCGACTGGGTGTACGAAAACCACCTGCACAGGGTGACGCACAATCTTGAG
TTCTTCTTTCCCCGCTTTCCAACGATGTGCAAGAAGATCGAGGCGAAAGG
TGAGCTGTGTGTGGTGCTTGGCCAGCACTATGTAGCATGGCTGAAGTTTT
TTTTTGTAGGGCTGTGGCCTTTCGTACGACGCGGTACGACGGCGATAATG
CCGCGGAGACCACTCTGTGGAGTTGGCACGGGTGTAAAAATACCAAAATA
CGATCTTTTACTCGCGAAACCTTCCGCTTGATTGGCCGGCTTGAACGGTA
GACTCGCGGCAGTGCAGGCAGGGAATCCCGTCCAGTTCAAGGTGTACGGA
GACGCGGCGTATCCCGTCAGCTCCCACGTCGACCGGGGTTTCCGCGGCGC
GAACCTGACGGTCGCGCAGAAGACCTACAACAGGGAGCTCTCGAAGGTCA
GGGTCTCCGTCGAATGGCAGTTCGGGAAGATCGTTGCACTTTTTCCGTAC
GTCGACTTCAAGCAGAACCTGAAGATAAAGCTACAGGCGGTCGCGAAGTA
CTACGCCGTAGCGGTGCTGCTCACTAACGCGCACACTTGCCTCTTCGGGA
GCATCACGGGCGAATACTTCGACATGTCCGCTCCGTCACTGGAGGCGTAC
TTCGCGTTCTAAAAGAGTTACTAGTGCGGCAGTAGACACCCGGGTCATTC
CGCAAATGTGGTTTCGGTACGTTGCATGCTTCCATGCATCAGGACGAGCG
TGAGACCAGTGTCGTTGGGTTGCTTGTCGTTTTCTTTTCTTTTAAATGCA
GTTCATCCCTCTCGTTGATGTGATGGTGCTGTGATTGCGCCGTCACCCTC
GACATGATTAATTTATGCTTTCGCAGGCCGGTGTTGCACTCGTAGGTCAT
TCGCGGTGGATTGTTACACTGCGATTACGACGAAAATGTTGCAGGTCAAC
GCCCAGTGTAATGGTGCAGGTGTAGATGTACACGTTCGGAGGGCCCGAAT
ATCGCGCATGTATTTCAACCCGTTTTCTGATCCTTGGGTTAAGTTTTACT
GCAGTAGGGGAAACACAACCATGATTTTTTGGGGGCGTGAAATTACCTGA
TAATTGATGGTGACCCCGTGTTTGCCGATTTGAAAAGCTCAAAGGATCGG
GTGATTTTTGTTGTGTTTTGCGAGGCAATCATCAGACAAAAAACGCATGC
ACTTTGGAGGCCTTGCCTCGCGTCGATAGCAACGAACGCTGGTTGCCGTC
ACCCTTTCGAGACAACCCCCCCTTCCTCCTGCTTAAGCTGTGTGCGACGA
TTTCGTGCGACAATTAAGTACGTTGCCCCCAAAGCACATAAGCGTGAGCC
TGTACTACCGCTCGGGCAAGCACGAAATTAACACTGCGAAAAAGGCACCG
AAGTTTTTTATTAAGTGTTGTGCAAAGCAAGAACATGGCGAATACACAAA
TGCAACAAGAAGGCCAACAACACGTTGAACAAAAAAAACAACGCTGCTTC
CCGTAACCCTTCTTCTGCCCCCCCTCCTCCCCCTTCCTGCTGCTCTCGCC
AGCGCACGCTGCGATGCGACAATTTCTTTGCCACTGCAGCACACGCAAGT
AGGCCTGTCTCTACCGCTGGGGCAAGCACGAAATTAACACTGCGAAAAAG
GCACCGAAGTTTTTTATTAAGTGTTGTGCAAAGCAAGAACATGGCGAATA
CACACATGCAACAAGAAGGCCAACAACACGTTGAACAAAAAAAACAACGC
TGCTTCCCGTAACCCTTCTTCTGCCCCCCCCCTCCCCCGCCTGTCTCTAC
CGCTGGGGCAAGCACGAAATTAACACTGCGAAAAAGGCACCGAAGTTTTT
TATTAAGTGTTGTGCAAAGCAAGAACATGGCGAATACACACATGCAACAA
GAAGGCCAACAGCACGTCGGAAAAAAAAACAACAACGCTGCTTCCCGTTA
CCCTTCTTCCGCACCCCTCATCCTACGCTGTGTGCGGCAATTCCTTTTAC
CACTACAGCACACGCAAGTGAAGTTGTACTACTACCGCTAATAGCACAAA
CCTCACCATACGATCAAGGCACACAGGCTTGGTGTTTTATTTTTTGTGTT
GTGGAAAGGGACAATTCGACAAAAAAAACAAAATGAAAAACAATGGTCCT
CATACAAGTCGATAGGTAACGGACGATGCTTCCCGTCACCCTTATTCTGC
CTCCCCCACCCACCCACCCACCCACCTTCCGCCAGCTTGCGCCGTGTGCG
ACAGATTCTTTGCCGCTGCATCCAACAATTATGGTAATGCACGACCGCGA
TAGGCGCAAATTCAACCCTTCGCAAATTTCTCCAAGACTGCTAAGACGCC
AAGATTCATCTTAGCCGACTGTGCGGCCTGTTCAGACTGATACTGCAGCT
GCATCCTTTGATTCTCCGCCAGCTGCTTGCGCGTCTCAGCGTCCAACATC
TCACGGTCCTCTCGGCGTTTCTTTGTTGCAGGACTGCCTACTGCTACATC
CTCAAAGCCTTCGCCTGCAGCAACGCGGCTTCGGCCTCCATTTTCTGAAT
CGCAAGCTCCTCTTCCTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig155:17717..22736-

>mRNA_P-littoralis_Contig155.8.1 ID=mRNA_P-littoralis_Contig155.8.1|Name=mRNA_P-littoralis_Contig155.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=135bp|location=Sequence derived from alignment at P-littoralis_Contig155:17717..22736- (Pylaiella littoralis U1_48)
ATGTGTTGCCCGTCGTCGCCGCCGGCAAGGGCTCATGCCCGATCAGGACT
GCCTACTGCTACATCCTCAAAGCCTTCGCCTGCAGCAACGCGGCTTCGGC
CTCCATTTTCTGAATCGCAAGCTCCTCTTCCTTAA
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