mRNA_P-littoralis_Contig1546.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1546.1.1
Unique NamemRNA_P-littoralis_Contig1546.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1546.1.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.410e-25
Identity = 62/114 (54.39%), Postives = 82/114 (71.93%), Query Frame = 1 
Query:    1 MVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTFAMHENGSFVEGTRVP--PSTRSPPAPIVAAV-MRPGRPKSMN 333
            MVGDG C+PVS FGDLDL+LHC  DV VTL+NVAV   LVL++IS + +Q+    I+LD  GA+ ++GKV F  +++G+FV+ TRV   P   S P P++AA  MRPG P+SMN
Sbjct:  124 MVGDGACMPVSFFGDLDLLLHCDEDVLVTLKNVAVAHGLVLNLISLNRVQERH-RIVLDHAGASSMEGKVKFTKYDDGNFVQATRVAHGPRRDSRPLPVLAAAAMRPGPPRSMN 236
[Close]
BLAST of mRNA_P-littoralis_Contig1546.1.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 5.010e-21
Identity = 51/110 (46.36%), Postives = 76/110 (69.09%), Query Frame = 1 
Query:    4 VGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTFAMHENGSFVEGTRVPPSTRSPPAPIVAAVMRPGRPKSMN 333
            +GDG  L   CFG LD+V HCR DV VT++++AVVP L  D++S +VIQ+    +LL+  G  +L+G+V F+    G++++ TR+     SPPA +VAA +RPGRP+S+N
Sbjct:   48 IGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETH-DLLLNSAGTWILNGRVHFSKLPTGNYIQATRIAHGA-SPPA-MVAATVRPGRPRSIN 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1546.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN01_9PHAE4.410e-2554.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCD8_9PHAE5.010e-2146.36Integrase catalytic domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1546contigP-littoralis_Contig1546:3055..3387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size334
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.5268114-CDS-P-littoralis_Contig1546:3054..33871680789739.5268114-CDS-P-littoralis_Contig1546:3054..3387Pylaiella littoralis U1_48CDSP-littoralis_Contig1546 3055..3387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1546.1.1prot_P-littoralis_Contig1546.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1546 3055..3387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1546.1.1

>prot_P-littoralis_Contig1546.1.1 ID=prot_P-littoralis_Contig1546.1.1|Name=mRNA_P-littoralis_Contig1546.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
MVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQ
KAKIPILLDERGATLLDGKVTFAMHENGSFVEGTRVPPSTRSPPAPIVAA
VMRPGRPKSMN
back to top

mRNA from alignment at P-littoralis_Contig1546:3055..3387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1546.1.1 ID=mRNA_P-littoralis_Contig1546.1.1|Name=mRNA_P-littoralis_Contig1546.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig1546:3055..3387+ (Pylaiella littoralis U1_48)
ATGGTGGGTGACGGGGAGTGTCTGCCTGTATCGTGCTTTGGGGATTTGGA
CCTGGTGCTTCATTGCCGTTACGACGTGCGGGTGACTCTGCGCAACGTAG
CGGTCGTCCCGAAATTGGTGTTGGATGTCATCTCGTTCAGCGTCATCCAG
AAGGCAAAGATACCAATACTGCTGGATGAGAGGGGGGCGACGCTGCTCGA
CGGCAAGGTCACCTTCGCCATGCACGAGAACGGTAGTTTTGTCGAGGGTA
CTCGTGTTCCCCCCAGTACCCGTTCTCCGCCGGCGCCGATTGTTGCGGCC
GTGATGCGGCCGGGCCGGCCCAAGAGCATGAAT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1546:3055..3387+

>mRNA_P-littoralis_Contig1546.1.1 ID=mRNA_P-littoralis_Contig1546.1.1|Name=mRNA_P-littoralis_Contig1546.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig1546:3055..3387+ (Pylaiella littoralis U1_48)
ATGGTGGGTGACGGGGAGTGTCTGCCTGTATCGTGCTTTGGGGATTTGGA
CCTGGTGCTTCATTGCCGTTACGACGTGCGGGTGACTCTGCGCAACGTAG
CGGTCGTCCCGAAATTGGTGTTGGATGTCATCTCGTTCAGCGTCATCCAG
AAGGCAAAGATACCAATACTGCTGGATGAGAGGGGGGCGACGCTGCTCGA
CGGCAAGGTCACCTTCGCCATGCACGAGAACGGTAGTTTTGTCGAGGGTA
CTCGTGTTCCCCCCAGTACCCGTTCTCCGCCGGCGCCGATTGTTGCGGCC
GTGATGCGGCCGGGCCGGCCCAAGAGCATGAAT
back to top