mRNA_P-littoralis_Contig154.14.8 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig154.14.8 vs. uniprot
Match: A0A6H5JK06_9PHAE (R3H domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK06_9PHAE) HSP 1 Score: 546 bits (1408), Expect = 4.540e-176 Identity = 315/527 (59.77%), Postives = 360/527 (68.31%), Query Frame = 2
Query: 512 GATPLDPAAQQAVRKERRDRAREAKLAQSKSKDES-----SVQHXXXXXXXXXXRRWGXXXXXXXXXXXXXXXXXXXXXXXEAKGPDLFDEWLGVRLTAWKGEGEGSATLAQAXXXXSGGQVLARPPEVSGVVEEIDFDPSKDEIAFPSCLSALQRRQVHGWAMQLALFHASSGEEQQRHVIVSKTGELYFVVSRSGVGVFQGKLLTRGGRTWYREGVTTPAVKRFALQSGHEAIAKPMVAALHRFHESVQLREPGFEKWLSDNTPFVDPSDVSG----PSLEIEKAQEAFLKWPLLHEVDCEYVDTREKARMYCDKHCASCASFLAALADALESCKEFGFDLEGHNARTYHGLTCLLQISTEAKDYVVDPLAEGMWDSMHLLRGPFRKADVLKIGHAIRSLDSPSLYRDFGIVVINAIDTEEAVHALGEKHSGLGKVLENAGVRETHDIAGLKQAMQTCDWRERPLSPEKLVYARCDSHYLIPLWRLLRARLLAADTFSSR------EEAREEEELRQIKRRLDAD 2047
G TP+ QQA+RK+RRDRAREAK+AQ+ K++S XXXXXXXXXX RW E + +FD+WL V+L AWK EG A GG LARPPE SGV EEIDFDPS+DEIAFP LSA QRRQ+HG AM+LALFHASSG + RHVI+S+TG VFQGK+LTRGG WY+ GV P VKRFA+Q GHEAIA+P + AL FH SVQL EPGFE+WL N P + G P E+EKAQ AFL+WPLLHEV+ EYVDT K L+ALA+ L +C+E+ FD+E HNARTYHGL CLLQISTE KDYVVDPLAEGMWD+M LLR F DVLKIGH+IRSLD PSL+RDFG V++NA+DTEEAVHALGEK S L KVL NAGVRE HD+AG+KQ M++CDWRERPLS EKLVYARCDSHYLIPLWRLLRARLLAADT SR E+ REE L +IK RLD D
Sbjct: 58 GVTPVTREEQQALRKQRRDRAREAKIAQTMMKNKSCQLQLQXXXXXXXXXXXXXXRWAPGQRGMGTLKAKA----------EHEAAAVFDQWLRVKLAAWK-EGRVPAN------PDGGGSSLARPPEESGVTEEIDFDPSQDEIAFPPSLSAQQRRQIHGLAMELALFHASSGADPNRHVIISRTG------------VFQGKILTRGGSKWYKPGVAAPVVKRFAMQPGHEAIAEPFLVALRSFHASVQLHEPGFEQWLRANVPPTSLPNAYGYAAAPEFEVEKAQTAFLEWPLLHEVEYEYVDTPAK---------------LSALAEDLNACREWSFDVEAHNARTYHGLVCLLQISTEWKDYVVDPLAEGMWDNMGLLRDAFGNPDVLKIGHSIRSLDVPSLFRDFGFVIVNAVDTEEAVHALGEKQSALEKVLINAGVREPHDMAGMKQDMKSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTLPSRQDGGEEEDGREEAALLEIKHRLDED 540
BLAST of mRNA_P-littoralis_Contig154.14.8 vs. uniprot
Match: D7FS53_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS53_ECTSI) HSP 1 Score: 259 bits (662), Expect = 2.190e-75 Identity = 135/220 (61.36%), Postives = 159/220 (72.27%), Query Frame = 2
Query: 1211 MVAALHRFHESVQLREPGFEKWLSDNTPFVDPSDVSGPS----LEIEKAQEAFLKWPLLHEVDCEYVDTREKARMYCDKHCASCASFLAALADALESCKEFGFDLEGHNARTYHGLTCLLQISTEAKDYVVDPLAEGMWDSMHLLRGPFRKADVLKIGHAIRSLDSPSLYRDFGIVVINAIDTEEAVHALGEKHSGLGKVLENAGVRETHDIAGLKQAMQ 1858
M + L FH SVQL EPGFE+WL N P + G + E+EKAQ AFL+WPLLH+V+ EYVDT K L+ALA+ L +C+E+ FD+E HNARTY+GL CLLQISTE KDYVVDPLAEGMWD+M LLR F DVLKIGH+IRSLD PSL+RDFG V++NA+DTEEAVHALG K S LGKVL +AGVRE HDIAG+KQ M+
Sbjct: 1 MPSILMCFHASVQLHEPGFEQWLRANAPPASLPNAYGYAAALDFEVEKAQTAFLEWPLLHDVEYEYVDTPAK---------------LSALAEDLNACREWSFDVEAHNARTYYGLACLLQISTEWKDYVVDPLAEGMWDNMGLLRDAFGNPDVLKIGHSIRSLDVPSLFRDFGFVIVNAVDTEEAVHALGGKQSALGKVLIDAGVREPHDIAGMKQDMK 205
BLAST of mRNA_P-littoralis_Contig154.14.8 vs. uniprot
Match: D7FJC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJC3_ECTSI) HSP 1 Score: 227 bits (578), Expect = 1.760e-62 Identity = 141/255 (55.29%), Postives = 163/255 (63.92%), Query Frame = 2
Query: 1748 EEAVHALGEKHSGLGKVLENAGVRETHDIAGLKQAMQTCDWRERPLSPEKLVYARCDSHYLIPLWRLLRARLLAADTFSSREEA------REEEELRQIKRRLDADQQRKET----------------AARQRHITIPSAATAAGAVSP----------VIVGKSPMKSPARSGSTSPSQQLL-AQEPWISEWDDPEDCHRRERSRSGSFFRPDLESIHESANSVGPASAADGGGSAFGFGLENALAAAFEEGDD 2413
+EAVHALG K S LGKVL +AGVRE HDIAG+KQ M++CDWRERPLS EKLVYARCDSHYLIPLWRLLRARLLAADTFSSR++ REE LR+IKRRLD A + + A TAAG S V+ G P +SP RSG+ SP+ A EPW+SEWDDPEDCHRRERSRSGSFFRPDLESIHE A + +A G GL++A+ AAF E ++
Sbjct: 15 QEAVHALGGKQSALGKVLIDAGVREPHDIAGMKQDMKSCDWRERPLSEEKLVYARCDSHYLIPLWRLLRARLLAADTFSSRQDGGEEKDGREEAALREIKRRLDXXXXXXXXXXXXXXXXXXXXXXXGGAGSGVVAMNGATTAAGLASDHLRSGSSTTAVVDGNLPARSPVRSGACSPAAATQSAWEPWMSEWDDPEDCHRRERSRSGSFFRPDLESIHEGARN-----------NACGAGLDSAVTAAFLEDEE 258
BLAST of mRNA_P-littoralis_Contig154.14.8 vs. uniprot
Match: A0A6H5JHP7_9PHAE (HRDC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP7_9PHAE) HSP 1 Score: 221 bits (564), Expect = 8.270e-59 Identity = 106/139 (76.26%), Postives = 122/139 (87.77%), Query Frame = 2
Query: 3314 VVLTDGVRLVWKALSRTQTAAALLWRPAPEARRQDSHNERHFRTAVQRLKAPRWSEINVRVYEEIYLWRDRTARRMDDGAAYVCPGDILIDVALAMPKTLDDLRRVSAPLSPVLGNADTPEAAELVRVVRVALGLPAEE 3730
VVLTDG+ L+WK+LSR A A+LWRP+ EA+R+D+H+ERHFRTA QRLK PRWSEINVRVYE+I+LWRDRTARR+DDG AYVCPGD LI+VALAMP T+D LRRV+ PLSPVLGN DTPEAAELVRVVR LGLP E+
Sbjct: 201 VVLTDGILLMWKSLSRAHVATAVLWRPSREAKREDAHSERHFRTAEQRLKPPRWSEINVRVYEDIFLWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRARLGLPGED 339
BLAST of mRNA_P-littoralis_Contig154.14.8 vs. uniprot
Match: D7FHJ9_ECTSI (HRDC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ9_ECTSI) HSP 1 Score: 204 bits (519), Expect = 8.870e-56 Identity = 97/131 (74.05%), Postives = 115/131 (87.79%), Query Frame = 2
Query: 3341 VWKALSRTQTAAALLWRPAPEARRQDSHNERHFRTAVQRLKAPRWSEINVRVYEEIYLWRDRTARRMDDGAAYVCPGDILIDVALAMPKTLDDLRRVSAPLSPVLGNADTPEAAELVRVVRVALGLPAEEE 3733
+WK+LSR A A+LWRP+ EA+ +D+H+ERHFRTA QRL+ PRWSEINVRVYE+I++WRDRTARR+DDG AYVCPGD LI+VALAMP T+D LRRV+ PLSPVLGN DTPEAAELVRVVRVALGL E++
Sbjct: 1 MWKSLSRAHVATAVLWRPSREAKGEDAHSERHFRTAEQRLRPPRWSEINVRVYEDIFVWRDRTARRLDDGVAYVCPGDTLIEVALAMPTTVDGLRRVAVPLSPVLGNGDTPEAAELVRVVRVALGLTGEDD 131
BLAST of mRNA_P-littoralis_Contig154.14.8 vs. uniprot
Match: D7FS54_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS54_ECTSI) HSP 1 Score: 198 bits (504), Expect = 3.390e-53 Identity = 131/245 (53.47%), Postives = 153/245 (62.45%), Query Frame = 2
Query: 512 GATPLDPAAQQAVRKERRDRAREAKLAQSKSKDESS-----VQHXXXXXXXXXXRRWGXXXXXXXXXXXXXXXXXXXXXXXEAKGPDLFDEWLGVRLTAWKGEGEGSATLAQAXXXXSGGQVLARPPEVSGVVEEIDFDPSKDEIAFPSCLSALQRRQVHGWAMQLALFHASSGEEQQRHVIVSKTGELYFVVSRSGVGVFQGKLLTRGGRTWYREGVTTPAVKRFALQSGHEAIAKPMVAALHR 1231
GA P+ QQA+RK+RRDRAREAK+AQ+ K++S XXXXXXXXXX RW E + +FD+WLGV+L AWK EG A GG LARPPE SGV+EEIDFDPS+DEIAFP LSA QRRQ+HG AM+LALFHASSG + RHVIVS+TG VFQGK+LTRGG WY+ GV P VKRFA+Q GHEAIA+P + AL R
Sbjct: 58 GAAPVTREEQQALRKQRRDRAREAKIAQTMMKNKSCQLQXXXXXXXXXXXXXXXXRWAPGQRGMGTLKAKA----------EQEAAAVFDQWLGVKLAAWK-EGRVPAN------PDGGGSSLARPPEESGVMEEIDFDPSQDEIAFPPSLSAQQRRQIHGLAMELALFHASSGADPNRHVIVSRTG------------VFQGKILTRGGSKWYKPGVAAPVVKRFAMQPGHEAIAEPYLVALRR 273
BLAST of mRNA_P-littoralis_Contig154.14.8 vs. uniprot
Match: A0A7R9W2W8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2W8_9STRA) HSP 1 Score: 130 bits (326), Expect = 3.610e-30 Identity = 71/162 (43.83%), Postives = 96/162 (59.26%), Query Frame = 2
Query: 1535 YHGLTCLLQISTE-AKDYVVDPLAEGMWDSMHLLRGPFRKADVLKIGHAIRSLDSPSLYRDFGIVVINAIDTEEAVHALGEKHSGLGKVLENAGVRETHDIAGLKQAMQTCDWRERPLSPEKLVYARCDSHYLIPLWRLL-----RARLLAADTFSSREEAR 2002
Y TCL+Q+ST+ +DYV+D LA G+WDSM LL F ++K+GH++ +D PSL+RDFGI V+N DT EA AL K L + ++ G++ + + LK Q DWR RPL+ + L Y R D+H+LI L LL R RL T EEAR
Sbjct: 4 YAQATCLVQLSTDQGRDYVIDTLAPGVWDSMSLLAPIFADRTIVKVGHSVAGMDVPSLHRDFGIFVVNCFDTYEAAKALRMKKVSLAALCKHYGLQSSKEYEDLKAEYQNTDWRRRPLTEDMLKYGRYDAHFLIKLRLLLIRDLTRTRLWDISTTDEEEEAR 165
BLAST of mRNA_P-littoralis_Contig154.14.8 vs. uniprot
Match: A0A7S1FQ03_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQ03_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.530e-29 Identity = 78/167 (46.71%), Postives = 96/167 (57.49%), Query Frame = 2
Query: 1496 EFGFDLEGHNARTYHGLTCLLQISTEAKDYVVDPLAEGMWDSMHLLRGPFRKADVLKIGHAIRSLDSPSLYRDFGIVVINAIDTEEAVHALGEKHS-GLGKVLENAGVRETHDIAGLKQAMQTCDWRERPLSPEKLVYARCDSHYLIPLWRLLRARLLAADTFSSRE 1993
E FDLE HN Y+GLTCLLQ++T +KDYVVD LA G++ S+ L F V+KIGH+I D P L+RDFGI V+NA DT EA L K L + E+ + + + LK Q DWR RPL E + Y R D HYLIPL +LL L DT E
Sbjct: 380 ELAFDLEMHNKSKYYGLTCLLQLATSSKDYVVDVLAPGVFSSVSFLAPIFSDPKVVKIGHSIVGNDVPCLHRDFGIFVVNAFDTYEAARHLQFKEGLSLASLCEHYNLPTGEEYSALKAKYQNSDWRIRPLREEMVQYGRYDVHYLIPLRKLLIRDLCTKDTCKEEE 546
BLAST of mRNA_P-littoralis_Contig154.14.8 vs. uniprot
Match: A0A7S3XKC3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKC3_HETAK) HSP 1 Score: 126 bits (317), Expect = 1.620e-27 Identity = 73/172 (42.44%), Postives = 96/172 (55.81%), Query Frame = 2
Query: 1460 LAALADALESCKEFGFDLEGHNARTYHGLTCLLQISTEAKDYVVDPLAEGMWDSMHLLRGP-FRKADVLKIGHAIRSLDSPSLYRDFGIVVINAIDTEEAVHALGEKHSGLGKVLENAGV--RETHDIAGLKQAMQTCDWRERPLSPEKLVYARCDSHYLIPLWRLLRARLL 1966
L LA L++ FGFDLE HN R+YHGLTCLLQ++T +VVDPLA G+W+ + GP F K+ H R D+P+L RDFG+ + + DT EA +G + GL +L G+ + LK + DWR RPL L YA D YL+PL LL+ LL
Sbjct: 18 LDELAAHLDTVDVFGFDLEFHNYRSYHGLTCLLQVATARGVWVVDPLAPGVWERVGPALGPAFADPQKAKVAHDARGGDAPALLRDFGVRLCHLFDTHEAARQVGHQRLGLTALLLEYGLPPAAAREAQALKDRHKLWDWRARPLGAAALRYAAADVWYLLPLRGLLQRALL 189
BLAST of mRNA_P-littoralis_Contig154.14.8 vs. uniprot
Match: A0A6B2FY24_MYXSQ (Exosome component 10 (Trinotate prediction) (Fragment) n=1 Tax=Myxobolus squamalis TaxID=59785 RepID=A0A6B2FY24_MYXSQ) HSP 1 Score: 124 bits (312), Expect = 7.140e-27 Identity = 67/167 (40.12%), Postives = 98/167 (58.68%), Query Frame = 2
Query: 1460 LAALADALESCKEFGFDLEGHNARTYHGLTCLLQISTEAKDYVVDPLAEGMWDSMHLLRGPFRKADVLKIGHAIRSLDSPSLYRDFGIVVINAIDTEEAVHALGEKHSGLGKVLE---NAGVRETHDIAGLKQAMQTCDWRERPLSPEKLVYARCDSHYLIPLWRLL 1951
L L + L +C F FDLE H+ R+Y G TCL+QIST +D+++D ++ + D +HLL F ++LKI H S D L RDF I V+N DT++A AL + L ++E N + + H ++ DWR+RPL + + YARCDSHYL+PL+ L+
Sbjct: 99 LNKLIETLSNCDVFSFDLEAHSLRSYQGFTCLIQISTHTEDFIIDTIS--LHDDIHLLNVIFTNPNILKIAHG-SSQDIVWLQRDFDIFVVNLFDTQQACLALNHNRTSLDSLVERYLNIHLDKFHQLS---------DWRQRPLPSDMIQYARCDSHYLLPLFDLI 253 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig154.14.8 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig154.14.8 >prot_P-littoralis_Contig154.14.8 ID=prot_P-littoralis_Contig154.14.8|Name=mRNA_P-littoralis_Contig154.14.8|organism=Pylaiella littoralis U1_48|type=polypeptide|length=987bp MQLALFHASSGEEQQRHVIVSKTGELYFVVSRSGVGVFQGKLLTRGGRTWback to top mRNA from alignment at P-littoralis_Contig154:66584..74493+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig154.14.8 ID=mRNA_P-littoralis_Contig154.14.8|Name=mRNA_P-littoralis_Contig154.14.8|organism=Pylaiella littoralis U1_48|type=mRNA|length=7910bp|location=Sequence derived from alignment at P-littoralis_Contig154:66584..74493+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig154:66584..74493+ >mRNA_P-littoralis_Contig154.14.8 ID=mRNA_P-littoralis_Contig154.14.8|Name=mRNA_P-littoralis_Contig154.14.8|organism=Pylaiella littoralis U1_48|type=CDS|length=2961bp|location=Sequence derived from alignment at P-littoralis_Contig154:66584..74493+ (Pylaiella littoralis U1_48)back to top |