mRNA_P-littoralis_Contig153.56.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig153.56.2
Unique NamemRNA_P-littoralis_Contig153.56.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig153.56.2 vs. uniprot
Match: A0A6H5KRI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI2_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 3.800e-99
Identity = 184/324 (56.79%), Postives = 217/324 (66.98%), Query Frame = 1 
Query:  388 FDIESLLTPVPTPRGTGFWDDENGAGG--QEEFYATSREEDDSSALPRALEHVFSWLREVEAGHQSCRASGVDETIFDTGALLAVRAPSSTASRDNDKVVLSKAVTKADFCLASRDQPSIAIGLYAQRVVCRSKWLFWSDWYAEYLVVTGTETELLRAWRTYSDFYSLARTVRTLGARRAVKCWNRLDQAQAQRRRTDPSSLRTEIRLLGRFLTTVLEELDHSEVGILADFVREPTTYVVVGVEDIEGSSNADTCGEFGRGGEATAIAPKAPESCFGETG-SNTSRGLSSP-GGAMFGAEIKHPMAWQMTAFSLKPAPRIWDGL 1347
            FDIE LLT       +GFW+ ENG G   QE    T   +D++SALPRALE VF WL EVEAG     ASGVDETI +T ALL++RAP S + R++DKV+ S AVTKADF +ASRDQPS+AIG+YA R+VCRS+WLFWS  Y EYLVVTGTETELL AWR+Y DFYSLA TVRTL A  A   W+RLDQA    RRTDP  +RTE R+L RFLTTVLEEL  ++VG+LADFVREPTTY+VVGVEDI          E  +  E  A  P+  E      G     R +S P    +FGA++ HPM W+     L+P PR   GL
Sbjct:   33 FDIEPLLTSRTASFHSGFWESENGEGVFLQE---PTGCRQDNNSALPRALERVFCWLEEVEAGCHG--ASGVDETIINTDALLSLRAPRSPSRRESDKVITSCAVTKADFSVASRDQPSLAIGIYAHRLVCRSRWLFWSKRYVEYLVVTGTETELLSAWRSYPDFYSLALTVRTLRAHGAANLWDRLDQALGPHRRTDPEGVRTEARVLSRFLTTVLEELVDTDVGVLADFVREPTTYLVVGVEDIASD-------ESEKQDEPLASTPEELEKRDSIRGVERCGRSISCPPADRIFGAKVGHPMKWETRESLLQPTPRSLVGL 344
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig153.56.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KRI2_9PHAE3.800e-9956.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig153contigP-littoralis_Contig153:157779..161308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1825
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-22_002770.1
Cds size981
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig153.56.2prot_P-littoralis_Contig153.56.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig153 158254..160939 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789732.0413365-UTR-P-littoralis_Contig153:157778..1582531680789732.0413365-UTR-P-littoralis_Contig153:157778..158253Pylaiella littoralis U1_48UTRP-littoralis_Contig153 157779..158253 -
1680789732.1081638-UTR-P-littoralis_Contig153:160939..1613081680789732.1081638-UTR-P-littoralis_Contig153:160939..161308Pylaiella littoralis U1_48UTRP-littoralis_Contig153 160940..161308 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789732.0508049-CDS-P-littoralis_Contig153:158253..1585441680789732.0508049-CDS-P-littoralis_Contig153:158253..158544Pylaiella littoralis U1_48CDSP-littoralis_Contig153 158254..158544 -
1680789732.062539-CDS-P-littoralis_Contig153:158836..1590761680789732.062539-CDS-P-littoralis_Contig153:158836..159076Pylaiella littoralis U1_48CDSP-littoralis_Contig153 158837..159076 -
1680789732.071576-CDS-P-littoralis_Contig153:159358..1595021680789732.071576-CDS-P-littoralis_Contig153:159358..159502Pylaiella littoralis U1_48CDSP-littoralis_Contig153 159359..159502 -
1680789732.0862715-CDS-P-littoralis_Contig153:159807..1599001680789732.0862715-CDS-P-littoralis_Contig153:159807..159900Pylaiella littoralis U1_48CDSP-littoralis_Contig153 159808..159900 -
1680789732.097339-CDS-P-littoralis_Contig153:160726..1609391680789732.097339-CDS-P-littoralis_Contig153:160726..160939Pylaiella littoralis U1_48CDSP-littoralis_Contig153 160727..160939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig153.56.2

>prot_P-littoralis_Contig153.56.2 ID=prot_P-littoralis_Contig153.56.2|Name=mRNA_P-littoralis_Contig153.56.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=327bp
MNRPSRFDIESLLTPVPTPRGTGFWDDENGAGGQEEFYATSREEDDSSAL
PRALEHVFSWLREVEAGHQSCRASGVDETIFDTGALLAVRAPSSTASRDN
DKVVLSKAVTKADFCLASRDQPSIAIGLYAQRVVCRSKWLFWSDWYAEYL
VVTGTETELLRAWRTYSDFYSLARTVRTLGARRAVKCWNRLDQAQAQRRR
TDPSSLRTEIRLLGRFLTTVLEELDHSEVGILADFVREPTTYVVVGVEDI
EGSSNADTCGEFGRGGEATAIAPKAPESCFGETGSNTSRGLSSPGGAMFG
AEIKHPMAWQMTAFSLKPAPRIWDGL*
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mRNA from alignment at P-littoralis_Contig153:157779..161308-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig153.56.2 ID=mRNA_P-littoralis_Contig153.56.2|Name=mRNA_P-littoralis_Contig153.56.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3530bp|location=Sequence derived from alignment at P-littoralis_Contig153:157779..161308- (Pylaiella littoralis U1_48)
CTCCGCTTGTGTTCATCATGAACAGTGAGAGGACACACATGCATGTATGA
TTTGTTCTCCTTCTGCTGCTGCGGCCTGTTGTTGCTGGTGTTGTCTTCAG
CGGGAGATCCCCGTTCTGCCCGTAAGCAGTGCCTCCACGCTCACATCCTC
AAGGCAAGAACTTCAAAATGTGTACTCGTGAGTCCTGTCGTCGCTTCGTT
CCTTGCGATTTTGCCAAGAAAAGGAAACAAGAAACCTTGTTGTTTAAAAA
ACTTTCGGAATAAAATTCGCGGTCCCGGCCGAGTCCCAGGACCGAAAAAT
TTAAAAATTTGAAAAAAATGCCATGTTTCGTCTTATTTTGCGGGCGATCC
AGTCATTTAACACCACCACATGAATCGACCCTCGAGGTTTGACATCGAGT
CACTGCTGACCCCAGTTCCGACGCCACGCGGGACGGGGTTTTGGGACGAC
GAGAACGGTGCGGGCGGCCAGGAAGAATTTTATGCCACGTCTAGAGAAGA
AGATGACAGCAGTGCTCTGCCACGCGCTCTCGAACACGTTTTCTCCTGGC
TCAGGGAGGTAGAAGCAGGCCACCAAAGCTGTGTGAGTCGGAGATTGCTT
TGTATGACATGCATGAAAAATGTGATGTGTGTGTGATGAAAATAATTTGT
GGGGTCTGTGGCCTGAAACATAGGGGGCACATTTGGCTAAATACTTCACT
CAATCTTATTTATTTTTCGATCCAGTTTTTGACATTAATTTCGGGGTCTT
CCAGCGAGACTGTCAAAACCACTTTTTCTCGATTCAACACCAAACATGTG
TGAACAGCAGCACCCGAAGCAGGGGCACCCAGAGCTCGGAAAGTAAAATC
TCTGGTGAGAAATTATCTTCCCATCACCTGTTGAACATGTCCGTGAACGA
GTGCTGCTGGGGTATCAAACAGATACAACCTGGCAACATCTGAAACAGAG
GGTGGTTTAGAAGCTTTCGATATCGACAGCAAAATGATGCTCTGTGAACA
GCTTGTCCGGGATCTTTGAGCATCTCGCGGGGGAGGAGTTTTTTCGTGCA
CAAAAGCCAAACTAGGTTTCAGCCCTAGCTACGAAAAGCGCGAATCCGAC
GAAAGAAAACGTTCAGAAAAATTCCAATTACTGCACAAGATACGGCAATT
TTTGCTATCCAGAGTAGAGTACCGTCTGGGAAATTGTACTCGAAGATCTA
TACCAATAACAAGTGTTTGTTTTGCCCAAATTCCCAAATGTGCCCTATAT
TTCCGGCCAGAGTGTGGTACATGTGTTCATGTCATTTGTCCAACGAATAA
CAACGCGAACAGCGGGTTGGCATACAGTGTTGTGTGGTTCACCTTGTGAG
CTGTAACTGGCAACAAGTCAATGAACGAACCGATGTTGCCCCCGTCAAAC
CAAACCAGAGAGCAAGTGGTGTGGACGAGACAATTTTCGACACAGGCGCT
TTGCTGGCCGTACGCGCACCTAGCTCCACAGCCAGTCGAGATAACGATAA
GGTGAGAAAGGTTGAGCCCATGACAACAACAGAACACTGCTGTGAAAGCC
TCGTGCTAACAGTGTTCGGACAAACAGGTTGGTGAATGTTTGCCATATAG
ACTTATCAGCGTTTACTTTTTTGGCCTTAATCTTGCCAGTACTCTTCAAC
AGTATACCAGGTACGATTAGGGGGCGAAGGCGGCGGGTCATACGTCCTTG
TCTTCGGGTGTGTGCGACCTGTCGGCTTCAGCACAACTCATTTCTCTGCA
TTCGCTTGGTCAAGTCTGACTCGCGAATTTCACGGCCAACACACCCACGA
AATTAGGTGGTTCTGTCGAAGGCCGTGACGAAGGCCGACTTTTGCTTGGC
ATCGAGGGACCAACCCTCCATTGCGATAGGCTTGTACGCCCAGCGGGTGG
TCTGTCGTTCGAAGTGGCTGTTCTGGTCAGACTGGTACGCCGAATACCTC
GTGAGTGTTGAAAACTGCACATGTCTTGTTTGTAACATGCCGAGAACACT
GTAAGGATGATAACAAACCTGCTGCAGGACTCTTGCTGGGATTGATAACC
ATAACACCCCAAAGATACATCGCATGTGCGTAAACATTCACCGGCTCACC
CAAACCCAACCAGTCTCAGGTCTATATTTTTTAGGTTTAGTACGTGACGC
CTCGAGTATTTTGTTTCACGGCCAGGTGAGGACTAAACTTTACAGATTCG
CGATGCATCCCAAAACGTTGCCAACCTGTCAGGTGGTCACGGGCACTGAG
ACTGAGCTGCTCAGGGCCTGGCGGACCTACTCAGACTTCTACTCCCTCGC
CCGTACCGTACGGACTCTAGGTGCCCGCAGAGCAGTCAAGTGCTGGAATC
GCCTGGATCAAGCGCAAGCGCAGCGCAGAAGGACGGACCCTTCGAGCCTG
AGGACGGAGATCCGCTTGCTAGGTCGTTTCTTGACAACAGTACTCGAGGA
GCTAGATCACTCGGAAGTTGGGGTAAGAACGACCTTATTATTATCTACCA
GTATGAAAGATACATCACACACCCGATGGGCGCCCTTGCAAAGCTTGACA
ATGTACAATACTACGCAAACGAACGTCTGGCCAAACGCAAAACGCTATAC
TACGTTGTCGGTTAGCTCCTAGCGCGAGATGTTCCAATGACCAACTTTTC
TGAACTGAGCTGACGCTTTGCTTTCGGCATATCAAAATTGTGAAGGTTCT
TGAGGGGTTGGTTGAGGTCCACGATGTACATCGCTGCCCCCCCCCCCCCG
TGCATGTATGGCAGATACTTGCCGACTTCGTTCGGGAGCCGACGACGTAC
GTTGTTGTGGGCGTCGAAGACATTGAGGGCAGCAGCAATGCCGATACGTG
TGGTGAGTTCGGAAGGGGCGGAGAAGCAACGGCCATCGCTCCAAAAGCGC
CAGAAAGCTGTTTCGGAGAAACCGGCAGCAATACTAGTAGAGGCCTATCC
TCACCTGGAGGCGCGATGTTCGGAGCGGAAATCAAGCACCCGATGGCCTG
GCAAATGACGGCGTTCTCGCTCAAGCCGGCGCCTCGAATTTGGGACGGGT
TGTGAACAGCGATTGCTGTGCATCATGATGAAGAGGTTTTTACACCTCTT
GACAAGCGAAATATGTCAATGTGTGTTTGGGTGCGTGCCTCAACTACTCT
TCTACTGTAGTCTGCGATGTTCCGTTTTCTTGCAGGCGTTCCCTCACAGG
CACGGGATTGAGATGGTCAGCATACCCCGGATTGGTAGGCAGAGGTGTGG
TGGGCGAGGATAGCCCCCGCCGACGCATATCGTTTCTCATAAGATTTTCT
TTCTCTCGCTGTTAGGATTTTTATCACTTCTCCGACTCGCGATACTTGTT
GCAGGTGAATACGTCCCTTGATTCGGACAAACAATGTCGGATCCGCTTCA
ACACGGTGAACAGGAATGCCAATATAACATCGGCCCATTTTCGGTATCAC
ACGCGTTGGATGCAGCCCGTAGGAAAGGACAAAAAAAGTACCAACACAAT
CGGAGGCGTATTGGCTCCAGCGGGTAAATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig153:157779..161308-

>mRNA_P-littoralis_Contig153.56.2 ID=mRNA_P-littoralis_Contig153.56.2|Name=mRNA_P-littoralis_Contig153.56.2|organism=Pylaiella littoralis U1_48|type=CDS|length=981bp|location=Sequence derived from alignment at P-littoralis_Contig153:157779..161308- (Pylaiella littoralis U1_48)
ATGAATCGACCCTCGAGGTTTGACATCGAGTCACTGCTGACCCCAGTTCC
GACGCCACGCGGGACGGGGTTTTGGGACGACGAGAACGGTGCGGGCGGCC
AGGAAGAATTTTATGCCACGTCTAGAGAAGAAGATGACAGCAGTGCTCTG
CCACGCGCTCTCGAACACGTTTTCTCCTGGCTCAGGGAGGTAGAAGCAGG
CCACCAAAGCTGTAGAGCAAGTGGTGTGGACGAGACAATTTTCGACACAG
GCGCTTTGCTGGCCGTACGCGCACCTAGCTCCACAGCCAGTCGAGATAAC
GATAAGGTGGTTCTGTCGAAGGCCGTGACGAAGGCCGACTTTTGCTTGGC
ATCGAGGGACCAACCCTCCATTGCGATAGGCTTGTACGCCCAGCGGGTGG
TCTGTCGTTCGAAGTGGCTGTTCTGGTCAGACTGGTACGCCGAATACCTC
GTGGTCACGGGCACTGAGACTGAGCTGCTCAGGGCCTGGCGGACCTACTC
AGACTTCTACTCCCTCGCCCGTACCGTACGGACTCTAGGTGCCCGCAGAG
CAGTCAAGTGCTGGAATCGCCTGGATCAAGCGCAAGCGCAGCGCAGAAGG
ACGGACCCTTCGAGCCTGAGGACGGAGATCCGCTTGCTAGGTCGTTTCTT
GACAACAGTACTCGAGGAGCTAGATCACTCGGAAGTTGGGATACTTGCCG
ACTTCGTTCGGGAGCCGACGACGTACGTTGTTGTGGGCGTCGAAGACATT
GAGGGCAGCAGCAATGCCGATACGTGTGGTGAGTTCGGAAGGGGCGGAGA
AGCAACGGCCATCGCTCCAAAAGCGCCAGAAAGCTGTTTCGGAGAAACCG
GCAGCAATACTAGTAGAGGCCTATCCTCACCTGGAGGCGCGATGTTCGGA
GCGGAAATCAAGCACCCGATGGCCTGGCAAATGACGGCGTTCTCGCTCAA
GCCGGCGCCTCGAATTTGGGACGGGTTGTGA
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