mRNA_P-littoralis_Contig153.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig153.46.1
Unique NamemRNA_P-littoralis_Contig153.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig153.46.1 vs. uniprot
Match: D7G8S3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S3_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 7.480e-29
Identity = 56/69 (81.16%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 VLPHENQAARPNKKSISAREALPSDVWEEFLSANVFDLLLFHWAKRMYLERSACRSLDTESISNLPPKI 207
            VLPHENQA R  KKSISA+EALPS VW E L+ANVFDLLLFHWAKRMYLERSACRS D E+I NLPP I
Sbjct:  355 VLPHENQAKREVKKSISAKEALPSGVWLEMLTANVFDLLLFHWAKRMYLERSACRSFDEEAILNLPPSI 423
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BLAST of mRNA_P-littoralis_Contig153.46.1 vs. uniprot
Match: D7FQI2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI2_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 3.770e-27
Identity = 55/69 (79.71%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:    1 VLPHENQAARPNKKSISAREALPSDVWEEFLSANVFDLLLFHWAKRMYLERSACRSLDTESISNLPPKI 207
            VLPHENQA R  KKSISA+EALPS VW E LSANVFDLLLFHWAKRMYLER ACRS D E+I NLP  I
Sbjct:  351 VLPHENQAKREVKKSISAKEALPSGVWSETLSANVFDLLLFHWAKRMYLERRACRSFDEEAILNLPLTI 419
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BLAST of mRNA_P-littoralis_Contig153.46.1 vs. uniprot
Match: A0A6H5LKI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKI8_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.730e-18
Identity = 38/68 (55.88%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    4 LPHENQAARPNKKSISAREALPSDVWEEFLSANVFDLLLFHWAKRMYLERSACRSLDTESISNLPPKI 207
            LP+E++A R +KKSI    ALP + W + L+ANVFDLLLF W KR+YLER ACR +D  SIS++ P+ 
Sbjct:   90 LPNEHEAVRLDKKSIHVIGALPREEWTDVLNANVFDLLLFQWVKRLYLERRACRHVDRASISDIQPQF 157
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BLAST of mRNA_P-littoralis_Contig153.46.1 vs. uniprot
Match: A0A836CC08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC08_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 3.740e-7
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   49 SAREALPSDVWEEFLSANVFDLLLFHWAKRMYLERSACRSL----DTES 183
            SAR++L +  W++   AN FDL+L+HWA+R++LER AC +     DTES
Sbjct:  405 SARDSLSAAAWQDLAEANAFDLVLYHWARRLFLERMACETAAAAADTES 453
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BLAST of mRNA_P-littoralis_Contig153.46.1 vs. uniprot
Match: A0A836C8W3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8W3_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.580e-6
Identity = 27/55 (49.09%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:    1 VLPHENQAARPNKKSIS-AREALPSDVWEEFLSANVFDLLLFHWAKRMYLERSAC 162
            V PHE  A R   ++ S ARE L  D W      N FDLL +H+A+R+YLER AC
Sbjct:  256 VRPHEKMAHRKKGEAPSLAREGLTLDEWNLLADGNAFDLLFYHYARRIYLERRAC 310
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig153.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G8S3_ECTSI7.480e-2981.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQI2_ECTSI3.770e-2779.71Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5LKI8_9PHAE4.730e-1855.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CC08_9STRA3.740e-748.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C8W3_9STRA1.580e-649.09Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig153contigP-littoralis_Contig153:128167..128391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G8S3
Model size225
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.23e-29
EggNOG OGs2DC45@1|root,2S5JB@2759|Eukaryota
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789731.8865776-CDS-P-littoralis_Contig153:128166..1283911680789731.8865776-CDS-P-littoralis_Contig153:128166..128391Pylaiella littoralis U1_48CDSP-littoralis_Contig153 128167..128391 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig153.46.1prot_P-littoralis_Contig153.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig153 128167..128391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig153.46.1

>prot_P-littoralis_Contig153.46.1 ID=prot_P-littoralis_Contig153.46.1|Name=mRNA_P-littoralis_Contig153.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=75bp
VLPHENQAARPNKKSISAREALPSDVWEEFLSANVFDLLLFHWAKRMYLE
RSACRSLDTESISNLPPKIGAFDA*
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mRNA from alignment at P-littoralis_Contig153:128167..128391-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig153.46.1 ID=mRNA_P-littoralis_Contig153.46.1|Name=mRNA_P-littoralis_Contig153.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=225bp|location=Sequence derived from alignment at P-littoralis_Contig153:128167..128391- (Pylaiella littoralis U1_48)
GTTTTGCCGCACGAGAACCAAGCGGCGCGGCCCAACAAGAAGTCCATCTC
GGCGAGAGAAGCGCTGCCGAGCGACGTTTGGGAAGAATTCCTGAGCGCCA
ATGTTTTCGACCTGCTGCTGTTCCATTGGGCCAAGAGGATGTACCTGGAG
CGAAGCGCCTGTCGCTCCTTGGACACAGAGTCTATCTCGAACTTGCCGCC
AAAAATAGGGGCGTTTGACGCTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig153:128167..128391-

>mRNA_P-littoralis_Contig153.46.1 ID=mRNA_P-littoralis_Contig153.46.1|Name=mRNA_P-littoralis_Contig153.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=225bp|location=Sequence derived from alignment at P-littoralis_Contig153:128167..128391- (Pylaiella littoralis U1_48)
GTTTTGCCGCACGAGAACCAAGCGGCGCGGCCCAACAAGAAGTCCATCTC
GGCGAGAGAAGCGCTGCCGAGCGACGTTTGGGAAGAATTCCTGAGCGCCA
ATGTTTTCGACCTGCTGCTGTTCCATTGGGCCAAGAGGATGTACCTGGAG
CGAAGCGCCTGTCGCTCCTTGGACACAGAGTCTATCTCGAACTTGCCGCC
AAAAATAGGGGCGTTTGACGCTTGA
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