mRNA_P-littoralis_Contig1529.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1529.5.1
Unique NamemRNA_P-littoralis_Contig1529.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1529.5.1 vs. uniprot
Match: A0A7S3HK03_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK03_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.960e-33
Identity = 54/97 (55.67%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 PHVVIHIRRGTLMKGSPHTRKHTLDAYYYSIIEIIRAKYPKAEFHGFPNLGKKENAPEQQKAQFEGYIKRNITLHYNTNILETWAHMIKADIFIMAH 291
            P V IHIRRG L+KG   +RKH+LD+YY++++EIIR++YP AE H FP L K   AP   + ++ GY KR+IT+H++ +I ETWAH I ADIF+MAH
Sbjct:    3 PRVAIHIRRGPLIKGPFASRKHSLDSYYFAVVEIIRSRYPHAEIHAFPLLPKGPEAPAVNETEYAGYEKRDITVHFDASIQETWAHFISADIFVMAH 99
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BLAST of mRNA_P-littoralis_Contig1529.5.1 vs. uniprot
Match: A0A813KLU8_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KLU8_POLGL)

HSP 1 Score: 78.6 bits (192), Expect = 1.060e-14
Identity = 46/122 (37.70%), Postives = 65/122 (53.28%), Query Frame = 1 
Query:    7 VVIHIRRGTLMKGSPHTRKHTLDAYYYSIIEIIRAKYPKAEFHGFPNLGKKENAPEQQ-----KAQFEGYIKRNITLHYNTNI------LETWAHMIKADIFIMAHSVFSSVPALLNKNCVV 339
            VV+H+RR  L KG       T D+YYY +   I+   P AEFH + +    +N P +         F+GY  R + +H +T I      L+ WAHM +A +FIM+ S FS VP  +N NCV+
Sbjct:  311 VVMHLRRADLEKGDARA---TPDSYYYRLARQIQELVPNAEFHVWAST---KNIPAKNWDYWTSKDFDGYRARGMQVHLDTQIQDNHKMLDAWAHMARAQVFIMSQSSFSQVPGYMNTNCVI 426
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1529.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3HK03_9STRA1.960e-3355.67Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A813KLU8_POLGL1.060e-1437.70Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1529contigP-littoralis_Contig1529:10708..11046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size339
Hectar predicted targeting categoryother localisation
Exons1
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789730.2329774-CDS-P-littoralis_Contig1529:10707..110461680789730.2329774-CDS-P-littoralis_Contig1529:10707..11046Pylaiella littoralis U1_48CDSP-littoralis_Contig1529 10708..11046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1529.5.1prot_P-littoralis_Contig1529.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1529 10708..11046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1529.5.1

>prot_P-littoralis_Contig1529.5.1 ID=prot_P-littoralis_Contig1529.5.1|Name=mRNA_P-littoralis_Contig1529.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
PHVVIHIRRGTLMKGSPHTRKHTLDAYYYSIIEIIRAKYPKAEFHGFPNL
GKKENAPEQQKAQFEGYIKRNITLHYNTNILETWAHMIKADIFIMAHSVF
SSVPALLNKNCVV
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mRNA from alignment at P-littoralis_Contig1529:10708..11046-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1529.5.1 ID=mRNA_P-littoralis_Contig1529.5.1|Name=mRNA_P-littoralis_Contig1529.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig1529:10708..11046- (Pylaiella littoralis U1_48)
CCTCATGTTGTCATACATATTCGCAGAGGTACACTTATGAAAGGCAGTCC
TCACACTCGAAAACACACACTTGATGCATATTATTATTCAATAATTGAAA
TTATTCGAGCAAAATATCCTAAAGCAGAGTTTCATGGTTTTCCCAACTTA
GGAAAGAAAGAAAATGCACCAGAGCAGCAGAAAGCGCAATTCGAAGGCTA
CATCAAACGCAACATCACTCTGCATTACAATACTAATATTCTTGAAACAT
GGGCACATATGATTAAAGCAGATATATTTATTATGGCACATAGTGTTTTT
TCTTCTGTACCTGCCTTATTAAACAAGAATTGTGTAGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1529:10708..11046-

>mRNA_P-littoralis_Contig1529.5.1 ID=mRNA_P-littoralis_Contig1529.5.1|Name=mRNA_P-littoralis_Contig1529.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig1529:10708..11046- (Pylaiella littoralis U1_48)
CCTCATGTTGTCATACATATTCGCAGAGGTACACTTATGAAAGGCAGTCC
TCACACTCGAAAACACACACTTGATGCATATTATTATTCAATAATTGAAA
TTATTCGAGCAAAATATCCTAAAGCAGAGTTTCATGGTTTTCCCAACTTA
GGAAAGAAAGAAAATGCACCAGAGCAGCAGAAAGCGCAATTCGAAGGCTA
CATCAAACGCAACATCACTCTGCATTACAATACTAATATTCTTGAAACAT
GGGCACATATGATTAAAGCAGATATATTTATTATGGCACATAGTGTTTTT
TCTTCTGTACCTGCCTTATTAAACAAGAATTGTGTAGTG
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