mRNA_P-littoralis_Contig1522.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1522.1.1 vs. uniprot
Match: D7FPY1_ECTSI (FACT complex subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY1_ECTSI) HSP 1 Score: 264 bits (674), Expect = 1.430e-79 Identity = 126/160 (78.75%), Postives = 143/160 (89.38%), Query Frame = 1
Query: 1 LLPKVLKHGFIQKVEHVIENEETTTHEKLAQEVNDIIEEPSKIKLNIAPGLVEPCYFPIVQSGGQYQLKVCVRSDDRDLSYDIIVCSMGARYKSYCANVSRSFFINPPKKVQNTYRTLLSLYHKCLDNLRPGEPVKGIVDKARRYLKDKTPDLEQHLTKV 480
L KVLK+GFI+K++ VIE EETTTHEKLAQEV DIIE+PSKIKLN+A LVE CYFPIVQSGG YQLK +SD+ +LSYD+I+CSMGARYKSYCANVSRSFFINPPKKVQNTYRTLLSLYHKCLDNLRPGEPVKG+V+KA RYL+DK+P LE+ +TK
Sbjct: 191 LTNKVLKYGFIKKMQEVIEEEETTTHEKLAQEVQDIIEDPSKIKLNVARDLVESCYFPIVQSGGHYQLKASAQSDESNLSYDVILCSMGARYKSYCANVSRSFFINPPKKVQNTYRTLLSLYHKCLDNLRPGEPVKGVVEKAHRYLQDKSPHLEKSITKT 350
BLAST of mRNA_P-littoralis_Contig1522.1.1 vs. uniprot
Match: A0A7S0XEF3_9STRA (FACT complex subunit (Fragment) n=2 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEF3_9STRA) HSP 1 Score: 162 bits (411), Expect = 5.940e-46 Identity = 76/160 (47.50%), Postives = 112/160 (70.00%), Query Frame = 1
Query: 1 LLPKVLKHGFIQKVEHVIENEETTTHEKLAQEVNDIIEEPSKIKLNIAPGLVEPCYFPIVQSGGQYQLKVCVRSDDRDLSYDIIVCSMGARYKSYCANVSRSFFINPPKKVQNTYRTLLSLYHKCLDNLRPGEPVKGIVDKARRYLKDKTPDLEQHLTKV 480
L KV+KHGFI ++E++I+ +E +H LA ++ II +PSKI L ++ +VE CY PI+QSGG+Y +++ S+ LS D+I+CS+GARYKSYCANV+R+F I+ P K++ TY TLLSLY+KCL+ + G +K + + A +L K+ DL HL K
Sbjct: 105 LTNKVIKHGFINEMENIIDKDEKVSHSDLALKIEGIITDPSKINLKVSSEVVESCYNPIIQSGGKYDIRISAVSNSDILSSDVIICSIGARYKSYCANVARTFLIDAPIKIEQTYNTLLSLYNKCLEAMVVGNELKDVYETAVSFLTTKSSDLLPHLPKT 264
BLAST of mRNA_P-littoralis_Contig1522.1.1 vs. uniprot
Match: A0A7S2A919_TRICV (FACT complex subunit (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A919_TRICV) HSP 1 Score: 164 bits (415), Expect = 1.030e-45 Identity = 77/157 (49.04%), Postives = 112/157 (71.34%), Query Frame = 1
Query: 10 KVLKHGFIQKVEHVIENEETTTHEKLAQEVNDIIEEPSKIKLNIAPGLVEPCYFPIVQSGGQYQLKVCVRSDDRDLSYDIIVCSMGARYKSYCANVSRSFFINPPKKVQNTYRTLLSLYHKCLDNLRPGEPVKGIVDKARRYLK-DKTPDLEQHLTK 477
KVLKHG I ++E VI++E+T THE+++ E+ IIE+PSKIKL + V+ CYFPIVQSGG+Y +++ +S + L YDII S+GARY+ YC+NV+R+F ++PPK V TY TL+S+ CL + PG P+KG+ A ++LK ++ DL + L K
Sbjct: 206 KVLKHGCIPRIEEVIDSEQTVTHEQMSTEIEGIIEDPSKIKLKVPKEHVQSCYFPIVQSGGEYDIRISAQSTGKTLKYDIITVSLGARYQLYCSNVARTFLVDPPKAVSQTYETLVSMQEACLKAMVPGRPLKGVYLAAVKHLKREEREDLVKRLPK 362
BLAST of mRNA_P-littoralis_Contig1522.1.1 vs. uniprot
Match: A0A7R9W7A9_9STRA (FACT complex subunit (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7A9_9STRA) HSP 1 Score: 160 bits (406), Expect = 2.320e-45 Identity = 74/157 (47.13%), Postives = 112/157 (71.34%), Query Frame = 1
Query: 10 KVLKHGFIQKVEHVIENEETTTHEKLAQEVNDIIEEPSKIKLNIAPGLVEPCYFPIVQSGGQYQLKVCVRSDDRDLSYDIIVCSMGARYKSYCANVSRSFFINPPKKVQNTYRTLLSLYHKCLDNLRPGEPVKGIVDKARRYLK-DKTPDLEQHLTK 477
KVLKHG I ++E +I++E++ THE+L+ E+ IE+PSKIKL + V+ CYFPIVQSGG+Y +++ +S ++ L YD+I S+GARY+ YC+N+SR+F ++PPK+V TY TLLS+ CL + PG+P+K + A ++LK + DL + L K
Sbjct: 19 KVLKHGVIPRIEEIIDSEQSITHEQLSTEIEATIEDPSKIKLKVPKDDVQTCYFPIVQSGGEYDIRISAQSTEKTLKYDVITVSLGARYRLYCSNISRTFLVDPPKEVSKTYETLLSMQEACLKAMVPGKPLKTVYLAAVKHLKREGREDLVKRLPK 175
BLAST of mRNA_P-littoralis_Contig1522.1.1 vs. uniprot
Match: A0A1E7FB05_9STRA (FACT complex subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FB05_9STRA) HSP 1 Score: 167 bits (424), Expect = 4.810e-45 Identity = 73/145 (50.34%), Postives = 108/145 (74.48%), Query Frame = 1
Query: 10 KVLKHGFIQKVEHVIENEETTTHEKLAQEVNDIIEEPSKIKLNIAPGLVEPCYFPIVQSGGQYQLKVCVRSDDRDLSYDIIVCSMGARYKSYCANVSRSFFINPPKKVQNTYRTLLSLYHKCLDNLRPGEPVKGIVDKARRYLKD 444
KV+KHGF++++E +IE+E+ THE A E+ I+E+P+KIKLN+ V+PCYFPI+QSGG+Y+LKV +S L++DIIV S+GARYK YC+N++R+F ++PPKKV Y LL + CL+ ++PG+P+K + A YLK+
Sbjct: 191 KVMKHGFVKRLEGIIEDEKEITHEAFASEIEAILEDPNKIKLNVPGDDVQPCYFPIIQSGGKYELKVSAQSTSNQLAHDIIVVSLGARYKLYCSNMTRTFLVDPPKKVSKNYEVLLEVQEACLEAMQPGQPLKAVYKAAVNYLKN 335
BLAST of mRNA_P-littoralis_Contig1522.1.1 vs. uniprot
Match: A0A482SIP5_9ARCH (M24 family metallopeptidase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIP5_9ARCH) HSP 1 Score: 156 bits (394), Expect = 1.120e-44 Identity = 67/159 (42.14%), Postives = 112/159 (70.44%), Query Frame = 1
Query: 1 LLPKVLKHGFIQKVEHVIENEETTTHEKLAQEVNDIIEEPSKIKLNIAPGLVEPCYFPIVQSGGQYQLKVCVRSDDRDLSYDIIVCSMGARYKSYCANVSRSFFINPPKKVQNTYRTLLSLYHKCLDNLRPGEPVKGIVDKARRYLKDKTPDLEQHLTK 477
L K++KHGF+ ++E +++N+ +H +L++++ II++P+KI L ++ VE CY PIVQSGGQY +K+ S++ L+ ++I+CS+GARY+SYC+ ++R+F ++ P K+++TY TLL+ YH CL+ + PG +K + + AR YLK K L L K
Sbjct: 8 LTNKIMKHGFVPEMESILDNDTKVSHTELSKKIEAIIQDPNKIGLKLSADSVESCYDPIVQSGGQYDIKLSAMSNNDKLTANVIICSLGARYRSYCSTLARTFLVDAPPKIEDTYATLLATYHVCLEKMVPGNELKDVYEAARNYLKTKDASLLSFLPK 166
BLAST of mRNA_P-littoralis_Contig1522.1.1 vs. uniprot
Match: A0A7S2V990_9STRA (FACT complex subunit n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V990_9STRA) HSP 1 Score: 166 bits (421), Expect = 1.220e-44 Identity = 75/157 (47.77%), Postives = 110/157 (70.06%), Query Frame = 1
Query: 10 KVLKHGFIQKVEHVIENEETTTHEKLAQEVNDIIEEPSKIKLNIAPGLVEPCYFPIVQSGGQYQLKVCVRSDDRDLSYDIIVCSMGARYKSYCANVSRSFFINPPKKVQNTYRTLLSLYHKCLDNLRPGEPVKGIVDKARRYLKDKTPDLEQHLTKV 480
KV+KHG+I+K+E VI++ E THE LA V++I+E PSKI L +A V+ CY+PIVQSGG + LK +S ++ LS+D+I+ S+GARY++YC+N+ R+F ++PPKKV Y LL + CL+ +RPG+P K + A +L+DK L +HL K
Sbjct: 201 KVMKHGYIKKMEDVIDSGEAITHEALASYVDEILENPSKIGLKVAGDDVQSCYYPIVQSGGNFDLKASAQSSEKKLSHDVIMVSLGARYRNYCSNIGRTFLVDPPKKVSENYELLLEMQEACLEVMRPGKPAKAVYKAAVSFLQDKDESLVKHLPKT 357
BLAST of mRNA_P-littoralis_Contig1522.1.1 vs. uniprot
Match: A0A7S1BP25_9STRA (FACT complex subunit n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BP25_9STRA) HSP 1 Score: 164 bits (415), Expect = 7.940e-44 Identity = 77/161 (47.83%), Postives = 114/161 (70.81%), Query Frame = 1
Query: 1 LLPKVLKHGFIQKVEHVIENEETTTHEKLAQEVNDIIEEPSKIKLNIAPGLVEPCYFPIVQSGGQYQLKVCVRSDDRDLSYDIIVCSMGARYKSYCANVSRSFFINPPKKVQNTYRTLLSLYHKCLDNLRPGEPVKGIVDKARRYLKDKT--PDLEQHLTK 477
L KV KHGF+ ++E +I+ E + +HE LA V +I++ SKIKL + VEPCYFPI+QSGG+Y L+V +SD+ +SYDII+ S+GARY++YC+N+SR+F I+PP+KV Y LL ++ CL +++ G P++ + + A YLK+K PDL +HL K
Sbjct: 254 LTNKVFKHGFVPEMERIIDKEISVSHETLAGYVQGVIDDVSKIKLKVPKDHVEPCYFPIIQSGGKYDLRVSSQSDESKVSYDIILASIGARYQNYCSNMSRTFLIDPPRKVSAHYEILLGMHEFCLKSMKAGRPLRSVYETAVNYLKNKANKPDLVKHLPK 414
BLAST of mRNA_P-littoralis_Contig1522.1.1 vs. uniprot
Match: K3WPK2_GLOUD (FACT complex subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPK2_GLOUD) HSP 1 Score: 161 bits (407), Expect = 9.400e-43 Identity = 67/159 (42.14%), Postives = 112/159 (70.44%), Query Frame = 1
Query: 1 LLPKVLKHGFIQKVEHVIENEETTTHEKLAQEVNDIIEEPSKIKLNIAPGLVEPCYFPIVQSGGQYQLKVCVRSDDRDLSYDIIVCSMGARYKSYCANVSRSFFINPPKKVQNTYRTLLSLYHKCLDNLRPGEPVKGIVDKARRYLKDKTPDLEQHLTK 477
L K+ K F++ +E +I++E+ +HEK++ ++ ++ E+P+K+K++I P +EPCY PIVQSGG+Y LK +SD ++ YD+I+CS+GARYK YC+NV R+FFI+P ++ +Y LL + C+ LRPG+ + +V+K R++++ + P L LTK
Sbjct: 231 LTTKIFKLKFMEDMEMIIDDEKKVSHEKISNDIEEVFEDPTKVKVSIDPVDIEPCYPPIVQSGGKYDLKPSAQSDSENMKYDVIICSLGARYKGYCSNVGRTFFIDPSSSMEKSYELLLEAHDMCVKELRPGKTIAKVVEKVRKFIQSRNPTLFAKLTK 389
BLAST of mRNA_P-littoralis_Contig1522.1.1 vs. uniprot
Match: A0A6S9A9U8_9STRA (FACT complex subunit n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9A9U8_9STRA) HSP 1 Score: 160 bits (406), Expect = 1.280e-42 Identity = 73/157 (46.50%), Postives = 110/157 (70.06%), Query Frame = 1
Query: 10 KVLKHGFIQKVEHVIENEETTTHEKLAQEVNDIIEEPSKIKLNIAPGLVEPCYFPIVQSGGQYQLKVCVRSDDRDLSYDIIVCSMGARYKSYCANVSRSFFINPPKKVQNTYRTLLSLYHKCLDNLRPGEPVKGIVDKARRYLKDKTPD-LEQHLTK 477
K+LKHGFI+++E VI++E TH +L+ E++ IIE+PSKI L + V+ CYFPIVQSGG+Y +K+ +S ++ L YDI+ S+G+RY++YC+NV+R+F ++PPK+V TY LLS+ +CL + PG P+K + A +LK L +HL K
Sbjct: 205 KILKHGFIKRIEEVIDSELNVTHTQLSGEIDGIIEDPSKINLKVPKEHVQSCYFPIVQSGGEYDIKISAQSTEKSLKYDIVTVSLGSRYQNYCSNVARTFLVDPPKEVSETYEVLLSMQEECLRAMVPGRPLKSVYATAVNFLKSSEKSFLVRHLPK 361 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1522.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1522.1.1 >prot_P-littoralis_Contig1522.1.1 ID=prot_P-littoralis_Contig1522.1.1|Name=mRNA_P-littoralis_Contig1522.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=166bp LLPKVLKHGFIQKVEHVIENEETTTHEKLAQEVNDIIEEPSKIKLNIAPGback to top mRNA from alignment at P-littoralis_Contig1522:834..2216- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1522.1.1 ID=mRNA_P-littoralis_Contig1522.1.1|Name=mRNA_P-littoralis_Contig1522.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1383bp|location=Sequence derived from alignment at P-littoralis_Contig1522:834..2216- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1522:834..2216- >mRNA_P-littoralis_Contig1522.1.1 ID=mRNA_P-littoralis_Contig1522.1.1|Name=mRNA_P-littoralis_Contig1522.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig1522:834..2216- (Pylaiella littoralis U1_48)back to top |