mRNA_P-littoralis_Contig152.97.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig152.97.1 vs. uniprot
Match: D8LID9_ECTSI (Proteasome subunit alpha type n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LID9_ECTSI) HSP 1 Score: 513 bits (1320), Expect = 5.850e-177 Identity = 258/264 (97.73%), Postives = 259/264 (98.11%), Query Frame = 3
Query: 276 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQAGRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHLFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDAQGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDEGGVEEAKAPAPDAGMA 1067
MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQA RLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHLFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFE+FENCDLDELVKHALKALSGCVTGDKELDA GLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDEG EE KAPAPDAGMA
Sbjct: 1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQASRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHLFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEDFENCDLDELVKHALKALSGCVTGDKELDANGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDEGDGEE-KAPAPDAGMA 263
BLAST of mRNA_P-littoralis_Contig152.97.1 vs. uniprot
Match: A0A836CE23_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE23_9STRA) HSP 1 Score: 382 bits (982), Expect = 6.820e-126 Identity = 189/266 (71.05%), Postives = 220/266 (82.71%), Query Frame = 3
Query: 276 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQAGRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHLFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDAQGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDEGGVEE-AKAPAP-DAGMA 1067
MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQG A LGL S +H VL ALKR+PNE+ + Q+KI K+D +MG++IAGLTADAR LAKYMRTE LNHKYVYGT +QA RL DLADMHQR TQSYVRRPYGVGML+AAHD TGPHL +T PSGNYFEYVAMAIGARSQSAKTYLEKH+++F +D+L+KH LKALSGC+TGDKELD +++AIVG + FE ++G +LQ ++DAIE+EG+AA P G E A PAP D G+A
Sbjct: 1 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGSACLGLTSKTHAVLCALKRSPNELGSYQEKIMKIDDHMGISIAGLTADARMLAKYMRTEALNHKYVYGTQLQANRLATDLADMHQRCTQSYVRRPYGVGMLIAAHDATGPHLMETSPSGNYFEYVAMAIGARSQSAKTYLEKHYQDFPAASVDDLIKHGLKALSGCITGDKELDVASVSVAIVGAGQAFEEVQGARLQAFLDAIEVEGDAAAPAPAGEPEAPADVPAPMDEGIA 266
BLAST of mRNA_P-littoralis_Contig152.97.1 vs. uniprot
Match: A0A4D9CTI6_9STRA (Proteasome subunit alpha type n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTI6_9STRA) HSP 1 Score: 353 bits (905), Expect = 2.560e-114 Identity = 173/241 (71.78%), Postives = 206/241 (85.48%), Query Frame = 3
Query: 276 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQAGRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHLFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDAQGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGN 998
MFRNQYDTDVTVWSPQGRLHQVEYA+EAVKQG +LGLRS VVLAALKR+ NE+S+ QKKIFK+D+++G+AI+GLTADARSLAKYMRTE LNHKYVYG+ +QA RLVLD+AD HQR TQSYVRRPYGVG+L+A++DQTGPHL+QT PSG Y+EY+A AIG+R+QS KTYLEK+ EFE+ DEL+KHALKALSG GDKEL ++A+VGKD E +EGE LQ Y+DAIE+EG+
Sbjct: 1 MFRNQYDTDVTVWSPQGRLHQVEYALEAVKQGACALGLRSKDFVVLAALKRSANELSSYQKKIFKVDNHIGIAISGLTADARSLAKYMRTEALNHKYVYGSALQASRLVLDVADKHQRCTQSYVRRPYGVGLLIASYDQTGPHLYQTDPSGAYYEYIAQAIGSRAQSGKTYLEKYHAEFESLGQDELIKHALKALSG-TAGDKELSKDNASVAVVGKDHPLEIIEGEALQRYLDAIEVEGD 240
BLAST of mRNA_P-littoralis_Contig152.97.1 vs. uniprot
Match: W7TFX4_9STRA (Proteasome subunit alpha n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFX4_9STRA) HSP 1 Score: 352 bits (903), Expect = 1.300e-112 Identity = 174/254 (68.50%), Postives = 211/254 (83.07%), Query Frame = 3
Query: 276 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQAGRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHLFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDAQGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQP-MDEGGVEE 1034
MFRNQYDTDVTVWSPQGRLHQVEYA+EAVKQG +LGLRS VVLAALKR+ NE+S+ QKKIFK+D+++G+AI+GLTADARSLAKYMRTE LNHKYVYG+ +QA RLV+D+AD HQR TQSYVRRPYGVG+L+A++DQTGPHL+QT PSG Y+EY+A AIG+R+QS KTYLEK+ EFE+ DEL+KHALKALSG GDKEL ++A+VGKD E +EGE LQ Y+DAIE+EG+ +D G + +
Sbjct: 1 MFRNQYDTDVTVWSPQGRLHQVEYALEAVKQGACALGLRSKDFVVLAALKRSANELSSYQKKIFKVDNHIGIAISGLTADARSLAKYMRTEALNHKYVYGSALQASRLVVDVADKHQRCTQSYVRRPYGVGLLIASYDQTGPHLYQTDPSGAYYEYIAQAIGSRAQSGKTYLEKYHAEFESLGQDELIKHALKALSG-TAGDKELSKDNASVAVVGKDHPLEIIEGEALQRYLDAIEVEGDTGDTCLDYGSISQ 253
BLAST of mRNA_P-littoralis_Contig152.97.1 vs. uniprot
Match: A0A7S3GRX0_9STRA (Proteasome subunit alpha type n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRX0_9STRA) HSP 1 Score: 348 bits (892), Expect = 1.490e-112 Identity = 166/248 (66.94%), Postives = 204/248 (82.26%), Query Frame = 3
Query: 276 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQAGRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHLFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDAQGLTLAIVGKDKVFESLEGEQLQPYMDAIELEGNAAQPMDE 1019
MFRNQYDTDVTVWSPQGRLHQVEYA EAV QG A LGLRS +HVVLAALKR+PNE++A QKKI K+D +MG+A++GLTAD RSL KYMRTE LN+KYVYGT +Q RLVLDLADMHQ+ TQSYVRRPYGVG+LV +DQTGPHL+ T PSGNY+EY AMAIG+RSQ+++TYLEK FE F N LD+L+KHALKAL+ + GD ELD++ ++++VG ++ F+ +EG LQ Y+DA+ +EG +E
Sbjct: 1 MFRNQYDTDVTVWSPQGRLHQVEYATEAVNQGTACLGLRSKTHVVLAALKRSPNELAANQKKIHKIDDHMGIAMSGLTADGRSLVKYMRTEALNNKYVYGTPIQGSRLVLDLADMHQKCTQSYVRRPYGVGLLVGTYDQTGPHLYLTEPSGNYYEYYAMAIGSRSQTSRTYLEKEFESFGNASLDDLIKHALKALAASLAGDSELDSKNASISMVGANQAFQIIEGPALQKYLDAVAVEGEQEMEQEE 248
BLAST of mRNA_P-littoralis_Contig152.97.1 vs. uniprot
Match: A0A7S2XQH4_9STRA (Proteasome subunit alpha type n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQH4_9STRA) HSP 1 Score: 343 bits (880), Expect = 1.470e-110 Identity = 164/241 (68.05%), Postives = 201/241 (83.40%), Query Frame = 3
Query: 276 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQAGRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQ-TGPHLFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDAQGLTLAIVGKDKVFESLEGEQLQPYMDAIELEG 995
MFRNQYDTDVTVWSP+GRL QVEYAME+VKQG A +G+RS SH VL ALKR+ +E+S+ QKKI ++D ++G+ IAGLTADARSLAK+M ECLNHKYVYGT M + RLV DLAD HQRTTQ+YVRRPYGVG+LVA++D+ TGPHL+QTCPSGN +EY A AIGARSQS +TYLEKH+E FE D+L+ HAL+AL+GCVTGD EL ++A+VGK + F +EG++LQPY+D +ELEG
Sbjct: 1 MFRNQYDTDVTVWSPEGRLLQVEYAMESVKQGSACVGMRSSSHTVLGALKRSVSELSSHQKKIIEIDDHIGIGIAGLTADARSLAKWMMNECLNHKYVYGTPMPSSRLVTDLADRHQRTTQTYVRRPYGVGLLVASYDEKTGPHLYQTCPSGNIYEYYASAIGARSQSGRTYLEKHYESFEEASKDDLIMHALRALAGCVTGDGELTRDNGSIAVVGKGESFILIEGDELQPYLDRLELEG 241
BLAST of mRNA_P-littoralis_Contig152.97.1 vs. uniprot
Match: A0A6U3ZK57_9STRA (Proteasome subunit alpha type n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3ZK57_9STRA) HSP 1 Score: 342 bits (878), Expect = 2.380e-110 Identity = 163/240 (67.92%), Postives = 199/240 (82.92%), Query Frame = 3
Query: 276 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQAGRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHLFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDAQGLTLAIVGKDKVFESLEGEQLQPYMDAIELEG 995
MFRN YDTDVTVWSP+GRL QVEYAME+VKQG A + LRS +H V+ ALKR+ +E+SA Q+KI ++D ++G+ IAGLTADAR+LAK+MR ECLNHKYVYGT + +GRLV DLAD HQRTTQSYVRRPYGVG+LVA+ D+ GPH++QTCPSGN +E A AIGARSQS +TYLEKH E FE C D+L+ HALKAL GCV+GD EL + ++AIVGKD+ F +EGE+LQPY+D +ELEG
Sbjct: 1 MFRNMYDTDVTVWSPEGRLLQVEYAMESVKQGSACIALRSTTHSVIGALKRSVSELSAHQQKILEIDDHLGIGIAGLTADARTLAKWMRNECLNHKYVYGTALPSGRLVTDLADRHQRTTQSYVRRPYGVGLLVASFDKNGPHVYQTCPSGNVYECYATAIGARSQSGRTYLEKHCESFEECSKDDLIMHALKALVGCVSGDGELTRENGSVAIVGKDQKFTLIEGEELQPYLDRLELEG 240
BLAST of mRNA_P-littoralis_Contig152.97.1 vs. uniprot
Match: A0A6S9F1R3_9STRA (Proteasome subunit alpha type n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9F1R3_9STRA) HSP 1 Score: 343 bits (879), Expect = 2.470e-110 Identity = 160/240 (66.67%), Postives = 201/240 (83.75%), Query Frame = 3
Query: 276 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQAGRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHLFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDAQGLTLAIVGKDKVFESLEGEQLQPYMDAIELEG 995
MFRNQYDTDVTVWSP+GRL QVEYAME+VKQG A LGLRS +H VL ALKR+ +E ++ QKK+ ++D +MG+ IAGLTADAR++AK+MR ECLNHKYVYGT M +GRL+ DLAD HQRTTQ+YVRRPYGVG+LVA++D+ GPHL+QTCPSGN +EY A AIGARSQS +TYLEKH+E + D+L+ HAL+AL+GCV+GD EL ++A+VGKD+ F +EG++LQPY+D +ELEG
Sbjct: 1 MFRNQYDTDVTVWSPEGRLLQVEYAMESVKQGSACLGLRSSTHSVLGALKRSVSEHASHQKKLLEIDDHMGIGIAGLTADARTIAKWMRNECLNHKYVYGTPMPSGRLLTDLADKHQRTTQTYVRRPYGVGLLVASYDKNGPHLYQTCPSGNLYEYYASAIGARSQSGRTYLEKHYETLNDASRDDLIMHALRALTGCVSGDVELTKDNGSIAVVGKDEKFTLIEGDELQPYLDRLELEG 240
BLAST of mRNA_P-littoralis_Contig152.97.1 vs. uniprot
Match: A0A7S2RSW0_9STRA (Proteasome subunit alpha type n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RSW0_9STRA) HSP 1 Score: 342 bits (878), Expect = 2.740e-110 Identity = 160/240 (66.67%), Postives = 203/240 (84.58%), Query Frame = 3
Query: 276 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRAPNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQAGRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHLFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDAQGLTLAIVGKDKVFESLEGEQLQPYMDAIELEG 995
MFRNQYDTDVTVWSP+GRL QVEYAME+VKQG A +GLRS +H VL ALKR+ +E+S+ QKK+ ++D +MG+ IAGLTADAR+LAK+MR ECLNHKYVYGT+M +GRLV DLAD HQRTTQ+YVRRPYGVG+LVA++D++GPHL+QTCPSGN +EY A AIGARSQS +TYLEK ++ + D+L+ HAL+A+SGCV+GD EL + ++A+VGKD F +EG++LQPY+D +ELEG
Sbjct: 1 MFRNQYDTDVTVWSPEGRLLQVEYAMESVKQGSACVGLRSSTHCVLGALKRSVSELSSHQKKLLEIDDHMGIGIAGLTADARTLAKWMRNECLNHKYVYGTSMPSGRLVTDLADRHQRTTQTYVRRPYGVGLLVASYDKSGPHLYQTCPSGNLYEYYASAIGARSQSGRTYLEKIYDNVADASRDDLIMHALRAISGCVSGDGELTRENGSIAVVGKDDKFTLIEGDELQPYLDRLELEG 240
BLAST of mRNA_P-littoralis_Contig152.97.1 vs. uniprot
Match: A0A1V9Z6U9_9STRA (Proteasome subunit alpha type n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z6U9_9STRA) HSP 1 Score: 342 bits (876), Expect = 2.920e-110 Identity = 159/239 (66.53%), Postives = 200/239 (83.68%), Query Frame = 3
Query: 276 MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKRA-PNEMSAPQKKIFKLDSNMGVAIAGLTADARSLAKYMRTECLNHKYVYGTTMQAGRLVLDLADMHQRTTQSYVRRPYGVGMLVAAHDQTGPHLFQTCPSGNYFEYVAMAIGARSQSAKTYLEKHFEEFENCDLDELVKHALKALSGCVTGDKELDAQGLTLAIVGKDKVFESLEGEQLQPYMDAIEL 989
MFRNQYDTDVTVWSPQG LHQ++YAMEAVKQG A LGLRS ++VVLA + R E++ PQKK+F++D++MG+AIAGL+ADARSLA++MRTECLNHK+VYG+ M RLV D+AD Q TQSYVRRPYGVG+LVA D+TGPHLFQTCPSGNY+EY A+AIGARSQSA+TYLEKHF+ F NCD +EL+KHAL+ + GC+ GD+EL + +A+VG ++ F +EG +LQPY+DA+E+
Sbjct: 1 MFRNQYDTDVTVWSPQGHLHQIDYAMEAVKQGSACLGLRSSNYVVLAGIMRVNAEELADPQKKLFEVDTHMGIAIAGLSADARSLARFMRTECLNHKFVYGSAMSVARLVADVADKKQECTQSYVRRPYGVGLLVAGVDKTGPHLFQTCPSGNYYEYNAIAIGARSQSARTYLEKHFQTFANCDKEELIKHALEGIRGCLEGDQELSIANIAVAVVGLNEAFHVIEGTKLQPYIDAVEV 239 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig152.97.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig152.97.1 >prot_P-littoralis_Contig152.97.1 ID=prot_P-littoralis_Contig152.97.1|Name=mRNA_P-littoralis_Contig152.97.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=265bp MFRNQYDTDVTVWSPQGRLHQVEYAMEAVKQGGASLGLRSGSHVVLAALKback to top mRNA from alignment at P-littoralis_Contig152:434382..441865+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig152.97.1 ID=mRNA_P-littoralis_Contig152.97.1|Name=mRNA_P-littoralis_Contig152.97.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7484bp|location=Sequence derived from alignment at P-littoralis_Contig152:434382..441865+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig152:434382..441865+ >mRNA_P-littoralis_Contig152.97.1 ID=mRNA_P-littoralis_Contig152.97.1|Name=mRNA_P-littoralis_Contig152.97.1|organism=Pylaiella littoralis U1_48|type=CDS|length=795bp|location=Sequence derived from alignment at P-littoralis_Contig152:434382..441865+ (Pylaiella littoralis U1_48)back to top |