mRNA_P-littoralis_Contig152.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig152.87.1
Unique NamemRNA_P-littoralis_Contig152.87.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig152.87.1 vs. uniprot
Match: D8LID5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID5_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.910e-12
Identity = 93/301 (30.90%), Postives = 129/301 (42.86%), Query Frame = 1
Query:    4 LATGTNKGIGLATVRGLPWTLTRIPSCFSAVKTSQG*LPKTPTRTQDRLRPSSLTSLL---------LCHGPPKLCTRLQRG-----DGEPESG-----TLNNNAGMVPDDGSTPYGFAPA---SLRQLPRRGEDDPHVSPAPEAV*GKGCHPSSAV-PPFVAVY--RRVQL*AEGPHDRPRRGPPLDRGARQRMRVHRVCQRQPSGEVHG---CRLVRGIEGRIDVYGLTKRKPALDHVYPTHPPRKYPALTINELTPSFVKFDLTT--------RLGEVGGVTPAEGASVLIHLATARL 798
            + TG NKGIGL  V+GL  T         +   ++G         Q+    S     L         +      + TRLQ G     DG   S       L NNAGM+P+D S+P GFA     + R + R  E      P  E   G+  + SS + P FVA     R  L  +         P +      R+    +      G + G      + GI+G + VYGL+K   AL ++Y     R++P+LTIN   P F+K D+T          L E+G  TPAEGA VL+HLATA++
Sbjct:   87 VVTGANKGIGLEIVKGLLETNKNAFVFLGSRDAARGQNAVQSLLEQNSESYSGRVEALEIDVSDASSVLQASETVRTRLQSGGCGGGDGAGVSSPAYLDALINNAGMMPEDASSPTGFASCIDVNFRGVVRTTEA---FLPLLEPWKGRIVNTSSTLGPSFVAKCSPERQALMTD---------PDVTHAQITRLVDECLAIASADGSLRGKFAAAGLSGIDGNMGVYGLSK---ALVNMYTVQLAREHPSLTINAAHPGFIKTDMTAPFEQSAGRTLEEMGAKTPAEGARVLVHLATAKV 372          
BLAST of mRNA_P-littoralis_Contig152.87.1 vs. uniprot
Match: D8LID4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.810e-11
Identity = 91/301 (30.23%), Postives = 127/301 (42.19%), Query Frame = 1
Query:    4 LATGTNKGIGLATVRGLPWTLTRIPSCFSAVKTSQG*LPKTPTRTQDRLRPSSLTSLL---------LCHGPPKLCTRLQRG-----DGEPESG-----TLNNNAGMVPDDGSTPYGFAPA---SLRQLPRRGEDD-PHVSPAPEAV*GKGCHPSSAVPPFVAVY--RRVQL*AEGPHDRPRRGPPLDRGARQRMRVHRVCQRQPSG---EVHGCRLVRGIEGRIDVYGLTKRKPALDHVYPTHPPRKYPALTINELTPSFVKFDLTT--------RLGEVGGVTPAEGASVLIHLATARL 798
            + TG NKGIGL  V+GL  T         +   ++G         Q+    S     L         +      + TRLQ G     DG   S       L NNAGM+P+D S+P GFA     + R + R  E   P + P+   V       SS+ P FVA     R  L  +         P +      R+    +      G   E      + G++G++ VYGL+K   AL ++Y     R++PAL +N  TP F+K D+T          L E+G  TPAEGA VL+HLAT  +
Sbjct:   78 VVTGANKGIGLEIVKGLLETNKNAFVFLGSRDAARGQNAVQSLLEQNSESYSGRVEALEIDVSDASSVLQASETVRTRLQSGGCGGSDGAGVSSPAYLDALINNAGMIPEDASSPTGFASCIDVNFRGVVRTTEAFLPLLEPSKGRV---AITSSSSGPSFVAKCSPERQALMTD---------PDVTHAQITRLVDECLAIASADGGLEEKFAAVGLSGMDGKMGVYGLSK---ALVNMYTVQLAREHPALIVNACTPGFIKTDMTAPFEKTMGKSLDEMGAKTPAEGAKVLVHLATGEV 363          
BLAST of mRNA_P-littoralis_Contig152.87.1 vs. uniprot
Match: A0A6H5JJF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJF8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 9.560e-10
Identity = 71/224 (31.70%), Postives = 100/224 (44.64%), Query Frame = 1
Query:  208 RLQRGDGEPESGT----------LNNNAGMVPDDGSTPYGFAPA---SLRQLPRRGEDD-PHVSPAPEAV*GKGCHPSSAVPPFVAVY--RRVQL*AEGPHDRPRRGPPLDRGARQRMRVHRVCQRQPSG---EVHGCRLVRGIEGRIDVYGLTKRKPALDHVYPTHPPRKYPALTINELTPSFVKFDLTT--------RLGEVGGVTPAEGASVLIHLATARL 798
            RLQ G G    GT          L NNAGM+P+D S+P GFA     + R + R  E   P + P+   V       SS+ P FVA     R  L  +         P +       +    +      G   E      + G++G++ VYGL+K   AL ++Y     R++P L +N  TP F+K D+T          L E+G  TPAEGA V++HLAT  +
Sbjct:  175 RLQSGGGGGSDGTGAPSPAYLDALINNAGMIPEDASSPTGFASCIDVNFRGVVRTTEAFLPLLKPSKGRV---AITSSSSGPSFVAKCSPERQALMTD---------PDVTHAQITALVDECLAIASADGSLEEKFAAVGLSGMDGKMGVYGLSK---ALVNMYTIQLAREHPTLIVNACTPGFIKTDMTAPFEKTMGKSLDEMGAKTPAEGAKVVVHLATGEV 383          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig152.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LID5_ECTSI3.910e-1230.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LID4_ECTSI1.810e-1130.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJF8_9PHAE9.560e-1031.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig152contigP-littoralis_Contig152:402603..403781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LID4
PFAMsadh_short
Model size838
Max annot lvl2759|Eukaryota
KEGG rclassRC00154,RC00205,RC00823,RC01491
KEGG koko:K00079
KEGG ReactionR02581,R02975,R04285,R09420
KEGG Pathwayko00590,ko00790,ko00980,ko01100,ko05204,map00590,map00790,map00980,map01100,map05204
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.37e-20
EggNOG OGsCOG1028@1|root,KOG1208@2759|Eukaryota
EC1.1.1.184,1.1.1.189,1.1.1.197
Descriptionoxidation-reduction process
Cds size360
COG categoryIQ
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789728.9313197-UTR-P-littoralis_Contig152:402602..4028251680789728.9313197-UTR-P-littoralis_Contig152:402602..402825Pylaiella littoralis U1_48UTRP-littoralis_Contig152 402603..402825 +
1680789728.9550316-UTR-P-littoralis_Contig152:403185..4032161680789728.9550316-UTR-P-littoralis_Contig152:403185..403216Pylaiella littoralis U1_48UTRP-littoralis_Contig152 403186..403216 +
1680789728.966915-UTR-P-littoralis_Contig152:403536..4036471680789728.966915-UTR-P-littoralis_Contig152:403536..403647Pylaiella littoralis U1_48UTRP-littoralis_Contig152 403537..403647 +
1680789728.9757545-UTR-P-littoralis_Contig152:403668..4037811680789728.9757545-UTR-P-littoralis_Contig152:403668..403781Pylaiella littoralis U1_48UTRP-littoralis_Contig152 403669..403781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789728.9424524-CDS-P-littoralis_Contig152:402825..4031851680789728.9424524-CDS-P-littoralis_Contig152:402825..403185Pylaiella littoralis U1_48CDSP-littoralis_Contig152 402826..403185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig152.87.1prot_P-littoralis_Contig152.87.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig152 402826..403185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig152.87.1

>prot_P-littoralis_Contig152.87.1 ID=prot_P-littoralis_Contig152.87.1|Name=mRNA_P-littoralis_Contig152.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=120bp
MVSPNRAPSITTPEWSPTTGLLPTDSRLRPYVNSHGVVKMTRTFLPLLKP
CKGRVVILRRRCRRLSPFIAECSSERKALTTDPDVAHPWIVGLANECVSI
ACASGNLQEKFTVVGLSVE*
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mRNA from alignment at P-littoralis_Contig152:402603..403781+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig152.87.1 ID=mRNA_P-littoralis_Contig152.87.1|Name=mRNA_P-littoralis_Contig152.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1179bp|location=Sequence derived from alignment at P-littoralis_Contig152:402603..403781+ (Pylaiella littoralis U1_48)
CTACTCGCGACCGGAACCAACAAGGGCATCGGTTTGGCGACCGTGCGAGG TCTCCCATGGACACTAACAAGAATACCTTCGTGTTTCTCAGCAGTGAAGA CGTCGCAAGGGTAACTGCCAAAAACTCCCACTCGTACCCAGGACAGGTTG AGGCCCTCCAGCTTGACGAGCCTGCTTCTGTGTCACGGGCCGCCAAAACT GTGCACGCGGCTGCAGCGTGGCGATGGTGAGCCCGAATCGGGCACCCTCA ATAACAACGCCGGAATGGTCCCCGACGACGGGTCTACTCCCTACGGATTC GCGCCTGCGTCCTTACGTCAACTCCCACGGCGTGGTGAAGATGACCCGCA CGTTTCTCCCGCTCCTGAAGCCGTGTAAGGGAAGGGTTGTCATCCTTCGT CGGCGGTGCCGCCGTTTGTCGCCGTTTATCGCCGAGTGCAGCTCTGAGCG GAAGGCCCTCACGACCGACCCCGACGTGGCCCACCCCTGGATCGTGGGGC TCGCCAACGAATGCGTGTCCATCGCGTGTGCCAGCGGCAACCTTCAGGAG AAGTTCACGGTTGTCGGCTTGTCCGTGGAATAGAGGGAAGGATTGACGTC TACGGGCTCACGAAGTATTGCAGGCACTATTTGAGCGAGCAGGAGCAATG GGGGTGGGAGAATTCGCGATACAAAGGTTTTGTCGCGGGAATCGAGCGCG TGTTGTATGTCGCAAATAAAACAAATCATCTCGCCCTTGCTTGTATCTGC GGAACCGATATCCGTTTCTTGTATGTACGTACGTTCACTTGCGCTCGGTG TATCATTTAGCAACCGACGTCTGCTCCATGACGAAAGTAAAACCAGCTCC CGCGAACATTGCTATAAGGCTGTCGGACAACTCAATCACCCGATCTGCTC GTGCTCCCTAGACGACTTTGAACGCAAAAGATAGGCGGAAACCGGCGTTG GACCACGTGTACCCTACTCACCCGCCACGGAAGTACCCAGCACTGACCAT CAACGAGTTAACACCGAGCTTTGTGAAGTTCGACTTGACAACACGGTCTT TCGGGGATTCTTAAAGACTCGGTGAGGTGGGCGGCGTGACACCGGCGGAA GGTGCCAGTGTTCTCATCCATCTGGCCACAGCCCGACTTTTCCAGCAGCG GGTGTTACTATGGGAGCAAGATCCAACGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig152:402603..403781+

>mRNA_P-littoralis_Contig152.87.1 ID=mRNA_P-littoralis_Contig152.87.1|Name=mRNA_P-littoralis_Contig152.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=360bp|location=Sequence derived from alignment at P-littoralis_Contig152:402603..403781+ (Pylaiella littoralis U1_48)
ATGGTGAGCCCGAATCGGGCACCCTCAATAACAACGCCGGAATGGTCCCC
GACGACGGGTCTACTCCCTACGGATTCGCGCCTGCGTCCTTACGTCAACT
CCCACGGCGTGGTGAAGATGACCCGCACGTTTCTCCCGCTCCTGAAGCCG
TGTAAGGGAAGGGTTGTCATCCTTCGTCGGCGGTGCCGCCGTTTGTCGCC
GTTTATCGCCGAGTGCAGCTCTGAGCGGAAGGCCCTCACGACCGACCCCG
ACGTGGCCCACCCCTGGATCGTGGGGCTCGCCAACGAATGCGTGTCCATC
GCGTGTGCCAGCGGCAACCTTCAGGAGAAGTTCACGGTTGTCGGCTTGTC
CGTGGAATAG
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