mRNA_P-littoralis_Contig152.19.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig152.19.2
Unique NamemRNA_P-littoralis_Contig152.19.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig152.19.2 vs. uniprot
Match: D8LRG7_ECTSI (Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG7_ECTSI)

HSP 1 Score: 680 bits (1754), Expect = 1.320e-238
Identity = 404/575 (70.26%), Postives = 438/575 (76.17%), Query Frame = 1
Query:  262 MAGLGDMTPAYPGVAELTRQLDQEKVAMLSKRVDDLRNQNQDLKNKIFKSENDTHEFVAYFQKEMETKDGMISKLNDELIRKESEMRVTVKHLQEKALRELAEATEQMTHKEKMLTNQIKNLEGDLSALARFRELRDSHNKAMEDMAAAVEAKAQAHAQEMIDLERKLLTDKGNLQKDLERVIEDVRRQAKIEAHSSLGGETKRIAGENKRLAKELRFQMQMTKELEAHSKALEDQTTNTARDVAIFKDKDQEYARQGQAKNKELKQLREQVAALSKALMEEALKGRREGDRARQDVARELEEQALDGAGLRQLLVLKNRELRNVRKLSHPFLRLSMHTTKQVETFFLEALQEVRQRIVNGRQAQYRRAVVEYNMRVREASRNRTKFPKIRDISALDPGAPSSLPTDPDTKVDISALKWEDKERVLRILFAKINNAQGYVDATPEHPLEAASAAXXXXXXXXXXXXXXXXXXSNGENSRHVPPGNSRTFVTQENTAAVKAAASRSSLEELSERDIGGSXXXXXXXXXXXXS-------VLAPGGGNSTSTSLSPRCESQASLLSGVSHQPQAPLI 1965
            MAGLGDMTPAYPGVAELTRQLDQEK+AMLS RVDDLRNQNQ+LKNKIFKSENDTHEFVAYFQKEMETKDG+ISKLNDELIRKE                          +KEK LTNQIKNLEGDLSAL RFRELRD+H+KAMEDMAAAV+AK QAHAQEMIDLERKLLTDK NLQKDLERVIEDVRRQAKIEAHSSLGGETKRIAGENKRLAKELRFQMQMT EL+AHSK LEDQTT TARDVAI  DKDQEYARQGQAKNKELK+L+EQV AL+KAL  EALKG+REGDR RQ+VAREL+EQ LDGAGLRQLL+LKNRELRNVRKLS   L        +VETFFLEAL+EVR+ IV+ RQ QYRRAV+EYN+RVREASRN+TKFPKIRDIS LDPG PSSLPT+PDTKVDIS+L WEDKERVLR+LFAKINN QGYVD TPEHPLEAASAA                  +            S TFVTQ   A   AAA+RSSLE+L+ERDIG +            S           G GN    S  P     + +L GV H+PQAP +
Sbjct:    1 MAGLGDMTPAYPGVAELTRQLDQEKIAMLSNRVDDLRNQNQELKNKIFKSENDTHEFVAYFQKEMETKDGIISKLNDELIRKER------------------------ANKEKALTNQIKNLEGDLSALVRFRELRDAHDKAMEDMAAAVKAKEQAHAQEMIDLERKLLTDKCNLQKDLERVIEDVRRQAKIEAHSSLGGETKRIAGENKRLAKELRFQMQMTTELQAHSKTLEDQTTTTARDVAILNDKDQEYARQGQAKNKELKRLKEQVTALTKALTNEALKGKREGDRTRQEVARELQEQTLDGAGLRQLLMLKNRELRNVRKLSQYIL----DQRNEVETFFLEALEEVRRYIVDRRQKQYRRAVMEYNLRVREASRNQTKFPKIRDISVLDPGPPSSLPTNPDTKVDISSLTWEDKERVLRLLFAKINNVQGYVDTTPEHPLEAASAAAFPPSVHGSAASQSDNDDARSLQDAGSSNNKSPTFVTQ---AGRAAAANRSSLEQLTERDIGAAGGAAGGGFVVVGSGXXXXXXARGKGAGNGRGCSSPP-----SPVLVGVPHEPQAPSV 539          
BLAST of mRNA_P-littoralis_Contig152.19.2 vs. uniprot
Match: A0A836CKC3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC3_9STRA)

HSP 1 Score: 291 bits (745), Expect = 1.370e-87
Identity = 192/483 (39.75%), Postives = 292/483 (60.46%), Query Frame = 1
Query:  286 PAYPGVAELTRQLDQEKVAMLSKRVDDLRNQNQDLKNKIFKSENDTHEFVAYFQKEMETKDGMISKLNDELIRKESEMRVTVKHLQEKALRELAEATEQMTHKEKMLTNQIKNLEGDLSALARFRELRDSHNKAMEDMAAAVEAKAQAHAQEMIDLERKLLTDKGNLQKDLERVIEDVRRQAKIEAHSSLGGETKRIAGENKRLAKELRFQMQMTKELEAHSKALEDQ----------------------TTNTARDVAIFKDKDQEYARQGQAKNKELKQLREQVAALSKALMEEALKGRREGDRARQDVARELEEQALDGAGLRQLLVLKNRELRNVRKLSHPFLRLSMHTTKQVETFFLEALQEVRQRIVNGRQAQYRRAVVEYN------MRVREASRNRTKFPKIRDISALDPGA---------PSSLPTDPDTKVDISALKWEDKERVLRILFAKINNAQGYVDATPEHPLEAASAA 1623
            P+YPG+ +L RQLDQE++ +L++R + LR +N++L+ +I K ++D++E VAYFQ+EME KD +I++L D+L  KE+E R+T+K +QEKA REL    E+    EK L  Q+  LEGDL++L +FRE R++H +A+E ++  ++   +A A+ M+++ERK L DK   Q+ ++   +    QA+ EAH+SLG E +R+A +++R+  ELR Q Q+T EL+ H++ L  Q                           RD  + + +D + A Q   + KE+++L EQV AL K+L       RRE   +R+ VA+ELEEQ LD +GLR+L+ LKNRELR+VR L+   L+       +VE+FFL+ALQEV++R+   ++ +    V   +       +   A ++  + P I   S + PG           S+LP DPD  +++  L WED+ERVLR+LFAKINN Q  VDA P HPLE    A
Sbjct:    8 PSYPGMLDLARQLDQEQIELLTQRTEGLRAENENLRQQISKCQHDSNELVAYFQREMEIKDNIINQLRDDLSHKEAEFRLTLKEVQEKAARELEVLDEESKATEKKLKGQVSLLEGDLTSLEQFRERRNAHQQAVEALSTQLKEAQEARAEAMLEMERKFLMDKSAAQRQVDERWQATVAQARREAHNSLGEEAQRMALQHRRMCVELRLQQQLTTELQTHNERLSAQXXXXXXXXXXXXXXXXXXXXXXVATLTRDAELLQAQDAKRAEQAHGRTKEVRRLMEQVEALQKSLDTALAGARRERTESRRAVAKELEEQTLDASGLRRLVELKNRELRHVRGLAQYILQ----QRNEVESFFLQALQEVKERVQEEKRMRSAANVAPASGSPTTHAKRSNAFKSPPRLPHIHATSTV-PGQLQHQLQQRPTSALPLDPDAHIELQELGWEDRERVLRLLFAKINNVQSRVDAMPPHPLEEVEGA 485          
BLAST of mRNA_P-littoralis_Contig152.19.2 vs. uniprot
Match: A0A7S2UZS8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZS8_9STRA)

HSP 1 Score: 287 bits (734), Expect = 2.410e-85
Identity = 185/462 (40.04%), Postives = 277/462 (59.96%), Query Frame = 1
Query:  277 DMTPAYPGVAELTRQLDQEKVAMLSKRVDDLRNQNQDLKNKIFKSENDTHEFVAYFQKEMETKDGMISKLNDELIRKESEMRVTVKHLQEKALRELAEATEQMTHKEKMLTNQIKNLEGDLSALARFRELRDSHNKAMEDMAAAVEAKAQAHAQEMIDLERKLLTDKGNLQKDLERVIEDVRRQAKIEAHSSLGGETKRIAGENKRLAKELRFQMQMTKELEAHSKALEDQTTNTARDVAIFKDKDQEYARQGQAKNKELKQLREQVAALSKALMEEALKGRREGDRARQDVARELEEQALDGAGLRQLLVLKNRELRNVRKLSHPFLRLSMHTTKQVETFFLEALQEVRQRIVNGRQAQYRRAVVEYNMRVREASRNRT-KFPKIRDI------SALDPGA---------PSSLPTDPDTKVDISALKWEDKERVLRILFAKINNAQGYVDATPEHPLEAA 1614
            D  P YP   ELTRQLDQEK+  L +RV+ L+ +N  LK K+ KSE DTHEFVAYFQ+EME KD +I+ L D L++KE E R   +        +L E T     KE+ L +++K ++ +L  L  FRE + S    M+ +        + H  +M   ERK L +K  +Q++ +R ++++R+ A++EA S L  +T+++  +N+R+ +ELRFQ+ M  EL+   K +E + T   R + + ++K+QEYA Q   ++KE+K L+++V  L + L  E  + + E + ++   A++LE+++L+  GLRQLL LKN+E+R ++KL+   L        +VE +FL+AL+EV+  I   RQ ++R A+ +Y  RVREA + R   FP IR          LD  A         PS LP DP  KVD+  L  ED+ERVLR+LFAKINN QG V+A P HPL A+
Sbjct:   25 DNLPGYPDALELTRQLDQEKIEGLDRRVEMLKKENDVLKGKLAKSEKDTHEFVAYFQREMENKDEIIANLKDNLVQKEVEFREEGQRKXXXXXEKLEEVTRGAGDKEEDLKSEVKRVKDELDKLEHFRENKTSLEMEMKHLREQNLRDEEKHVAQMTQHERKFLEEKAKMQREYDRQVQEMRQVARMEAQSGLDMDTRKVILDNRRMGEELRFQVAMMGELQTEKKIVESENTQQRRQMELLREKEQEYALQSHRQHKEIKTLQDKVIRLQELLDRETARVQHERESSKNKTAKQLEDKSLEAQGLRQLLTLKNKEIRQIKKLAKTIL----DQRTEVEQYFLDALEEVKAGIREERQVKHRAALADYKNRVREARKQRIGTFPNIRPNVTLRGPQELDRNASERSIGEALPSKLPPDPSAKVDLKDLTLEDRERVLRLLFAKINNVQGQVEALPSHPLTAS 482          
BLAST of mRNA_P-littoralis_Contig152.19.2 vs. uniprot
Match: F0Y4I6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4I6_AURAN)

HSP 1 Score: 241 bits (615), Expect = 2.430e-69
Identity = 158/407 (38.82%), Postives = 241/407 (59.21%), Query Frame = 1
Query:  412 ENDTHEFVAYFQKEMETKDGMISKLNDELIRKESEMRVTVKHLQEKALRELAEATEQMTHKEKMLTNQIKNLEGDLSALARFRELRDSHNKAMEDMAAAVEAKAQAHAQEMIDLERKLLTDKGNLQKDLERVIEDVRRQAKIEAHSSLGGETKRIAGENKRLAKELRFQMQMTKELEAHSKALEDQTTNTARDVAIFKDKDQEYARQGQAKNKELKQLREQVAALSKALMEEALKGRREGDRARQDVARELEEQALDGAGLRQLLVLKNRELRNVRKLSHPFLRLSMHTTKQVETFFLEALQEVRQRIVNGRQAQYRRAVVEYNMRVREASRN--RTKFPKIR------DISALDPGAPSSLPTDPDTKVDISALKWEDKERVLRILFAKINNAQGYVDATPEHPLE 1608
            E DTHEFVAYFQKE+E KD  I  LN+ +  +++E +     L  +   ++A+   ++   +   T +I+ LE +L+ +  FRE++ + +  +E+   A++   + H  E    ERK L +K  +QKDLE+   D+RR AK E  + L  +T ++ GEN+R+A+ELRFQ QMT EL++   A+++      RD+ + ++K+ EYA+Q   KN+E K+  E++AAL + L +   K + E    R+ +   LEEQ LD AGLRQ+L LKNREL  +R+L+     + +    +VE FFLEAL++V+  IV  RQ +YR  + EY  ++R A+      KFPKIR      D+  + P AP ++P +   KV +  L  ED+E VLR+LFAKIN   G V + P H LE
Sbjct:    3 EKDTHEFVAYFQKELEGKDVRIHSLNELMAHQDAERQAEHDALVRRQSEQVADLETKLQTADTTSTAKIQMLEDELAKVDTFREMKLAMDAKIEEQEKALKLAEERHLAEATANERKFLAEKSKMQKDLEKRTSDIRRAAKQEMQNGLDADTLKVIGENRRMAEELRFQQQMTAELQSEKNAVDEAVRVLRRDMELAREKEGEYAKQSHVKNREAKKREEKIAALEELLRDAGKKFQGEKAHLRRSLQASLEEQTLDAAGLRQMLRLKNRELSKLRRLAE----MVLEQRTEVEQFFLEALEDVKANIVKQRQERYRADMAEYRTQMRTATLGDGTAKFPKIRALQAGKDVDGMGPPAPGTMPHNLSAKVQLKDLTLEDREHVLRLLFAKINAVHGNVSSLPPHDLE 405          
BLAST of mRNA_P-littoralis_Contig152.19.2 vs. uniprot
Match: A0A485LPB6_9STRA (Aste57867_22131 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPB6_9STRA)

HSP 1 Score: 216 bits (549), Expect = 3.120e-59
Identity = 154/438 (35.16%), Postives = 262/438 (59.82%), Query Frame = 1
Query:  310 LTRQLDQEKVAMLSKRVDDLRNQNQDLKNKIFKSENDTHEFVAYFQKEMETKDGMISKLNDELIRKESEMR---VTVKHLQEKALRELAEATEQMTHKEKMLTNQIKNLEGDLSALARFRELRDSHNKAMEDMAAAVEAKAQAHAQEMIDLERKLLTDKGNLQKDLERVIEDVRRQAKIEAHSSLGGETKRIAGENKRLAKELRFQMQMTKELEAHSKALEDQTTNTARDVAIFKDKDQEYARQGQAKNKELKQLREQVAALSKALMEEALKGRREGDRARQDVARELEEQALDGAGLRQLLVLKNRELRNVRKLSHPFLRLSMHTTKQVETFFLEALQEVRQRIVNGRQAQYRRAVVE----YNMRVREASRNRTKFPKIRDISALDPGAPSSLPTDPDTKVDISALKWEDKERVLRILFAKINNAQGYVDATPEHP 1602
            L  Q++  KV +L KR+D+L+ +N+ L+    KSE +THEFVAYFQ+E+  ++ + +KL+++L   ++      V +K   +   R++ + ++ + H    L++++K  + DLS L  FR+++DS  K M+ ++  +EA+  AH + M  LERK L +K   QKD ++ IE +++Q++ +A + L  +T++I  +NKR+ +ELRFQ+Q T+EL      LE        ++ +  DK+ EYA+ GQ + +E+KQL+ +V  L K+L +   +  +E         +EL++ +LD  GLR+LL LKN+ELRN+++LS   L         VE FFL++L+     IV  + A  ++ VV+     + ++  A R   KFP+++  +  +    +S P     KVD+ +L WE++ERVLR+LFAKIN+ QG+ DA P+ P
Sbjct:   13 LNAQVEASKVDVLKKRIDELQAENEHLRFLHQKSEKETHEFVAYFQRELGAREKVTAKLSEDLSDAKTRFHDETVELKTKYDLDTRQMLQTSKLVEHS---LSDKLKVAQEDLSKLEIFRDMKDSVEKKMQALSDTIEAERAAHKEAMAMLERKFLEEKARNQKDTDKRIEKIKQQSREDARNVLDADTRKIVTDNKRMGEELRFQLQTTEELTKEKAKLEAAAKTLKSEIQMHTDKELEYAKYGQKQTREIKQLQAKVKTLEKSLCQVVHEFEKEKHVLTTKTEKELDDVSLDADGLRKLLKLKNKELRNMKRLSQTIL----DQRTDVEQFFLDSLE-----IVKTQLADEKKRVVDAERLQDAKLTPAERG-LKFPRLK--TRPNQSNNNSSPLGVKDKVDLRSLSWEERERVLRLLFAKINSVQGFFDAPPDDP 435          
BLAST of mRNA_P-littoralis_Contig152.19.2 vs. uniprot
Match: A0A662WS35_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WS35_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.790e-57
Identity = 164/460 (35.65%), Postives = 253/460 (55.00%), Query Frame = 1
Query:  268 GLGDMTPAYPGVAELTRQLDQEKVAMLSKRVDDLRNQNQDLKNKIFKSENDTHEFVAYFQKEMETKDGMISKLNDELIRKESEMRVTVKHLQEKALRELAEATEQMTHKEKMLTNQIKNLEGDLSALARFRELRDSHNKAMEDMAAAVEAKAQAHAQEMIDLERKLLTDKGNLQKDLERVIEDVRRQAKIEAHSSLGGETKRIAGENKRLAKELRFQMQMTKELEAHSKALEDQTTNTARDVAIFKDKDQEYARQGQAKNKELKQLREQVAALSKALMEEALKGRREGDRARQDVARELEEQALDGAGLRQLLVLKNRELRNVRKLSHPFLRLSMHTTKQVETFFLEALQEVRQRIVNGRQAQYRRAVVEYNMRVREAS--RNRTKFPKIRDISALDPGAPSSLPTDPDT---------KVDISALKWEDKERVLRILFAKINNAQGYVDATPEHPLEAA 1614
            G GD   A        RQLDQ+K+  L+ RV  L++++  L+ +  K E +THEFVAYFQKE++T+D  ++KL +EL        +T++ +Q+    E    T+Q    E+    Q+  L  +L  L  FRE++DS    M+D+ A +  + +   +    LERK L +K  LQK+ E+ IE V++QAK +A + L  +T++I  +NKR+ +ELRFQ+QMT+EL+   +  E +      ++ +   K+ E+ARQ Q + +EL QLR  +    + L        R+         RE EE AL+  GLR+LL LKNRELRN+R+L+   L         VE FFL+AL+ V++ I   R+AQ  +    Y+  V  +   +   +FPK++  +  +  A +     P++         KVD+  L WED+ERVLR++FAKIN +Q YVD   + P  AA
Sbjct:   13 GAGDEATAL-----FNRQLDQQKLETLAARVAQLQDEDAALRARHDKREQETHEFVAYFQKEIQTRDKQLTKLGEELATVRLSHALTLEQMQQTRDAERQHLTQQAAANEEASAEQLFYLREELHQLELFREMKDSVAAKMKDLEAQLVLEKEKARETDGALERKFLEEKARLQKEHEKKIEVVKQQAKEDARNGLDADTRKIVTDNKRMGEELRFQLQMTEELQREKQHFEARAKTLQVELQLQVQKEGEFARQAQRQTRELTQLRSSLREAEQRLGAGLAAAARDTHTNVARGEREREELALEVDGLRKLLCLKNRELRNLRRLAQTVL----DQRTDVEQFFLDALEHVKREIERERKAQREQEFERYHREVNRSQGLKPSLRFPKLQSPNNHNHTATAGARQAPESPSSQQHFSEKVDLRQLSWEDRERVLRLVFAKINGSQSYVDLQGDAPSHAA 463          
BLAST of mRNA_P-littoralis_Contig152.19.2 vs. uniprot
Match: A0A8K1CGG6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGG6_PYTOL)

HSP 1 Score: 212 bits (539), Expect = 3.980e-57
Identity = 162/477 (33.96%), Postives = 259/477 (54.30%), Query Frame = 1
Query:  220 GARRARRSTVYQG-----AMAGLGDMTPAYPGVAE--LTRQLDQEKVAMLSKRVDDLRNQNQDLKNKIFKSENDTHEFVAYFQKEMETKDGMISKLNDELIRKESEMRVTVKHLQEKALRELAEATEQMTHKEKMLTNQIKNLEGDLSALARFRELRDSHNKAMEDMAAAVEAKAQAHAQEMIDLERKLLTDKGNLQKDLERVIEDVRRQAKIEAHSSLGGETKRIAGENKRLAKELRFQMQMTKELEAHSKALEDQTTNTARDVAIFKDKDQEYARQGQAKNKELKQLREQVAALSKALMEEALKGRREGDRARQDVARELEEQALDGAGLRQLLVLKNRELRNVRKLSHPFLRLSMHTTKQVETFFLEALQEVRQRIVNGRQAQYRRAVVEYNMRVREASRNR---TKFPKIRDISALDP------GAPSSLPTDPDTKVDISALKWEDKERVLRILFAKINNAQGYVDATPEHP 1602
            G    RRS+V        A   LG      P  A     RQ+D +K+  L+ RV  L+ +N+ L+ +  K E +THEFVAYFQKE++T+D  I+KL +EL   +    + ++  Q+    E  +  +  ++KE+  T Q+  L+ +L+ L  F+E++++ +  M+++ A +  +     +++  LERK L +K  LQK+ E+ IE V++QAK +A + L  +T++I  +N+R+ +ELRFQ+QMT+ELE      E +      ++         YA   Q + +E++QLR  +  L K + E      RE         +E+EE  LD  GLR+L+ LKN+ELRN+R+L+   L         VE FFL+AL+ V++ I   R+ Q  + +  Y++++ +AS  +    +FP +       P      G+  S       KVD+  L WEDKERVLR++FAKIN  Q Y DATP+ P
Sbjct:    4 GGPTERRSSVVGSTGGVDASGSLGANPATAPPTASDLFNRQVDLQKIEFLNDRVLQLQAENEALRERHDKREQETHEFVAYFQKEIQTRDKQITKLTEELAALKLSHALELEASQQAKETESQQLQQYYSNKEESFTEQLFFLKEELNQLETFKEMKETIHDKMKNLEALLTKERDGTKEQIGALERKFLEEKARLQKEHEKKIEIVKQQAKEDARNGLDADTRKIMTDNRRMGEELRFQLQMTEELEKEKTTFEAKAKKYHMEMQXXXXXXXXYAAAAQKQAREIRQLRATIRDLEKQMSESVAALEREKYVLENKSEKEIEEMTLDVEGLRRLVRLKNKELRNLRRLAQTIL----DQRTDVEIFFLDALEHVKREIETERRRQKEQEMERYHIQMHKASGLKGLPLRFPLLSSSGDTSPAHVLPSGSRDSDSRHFSDKVDLRQLTWEDKERVLRLVFAKINGVQSYADATPQEP 476          
BLAST of mRNA_P-littoralis_Contig152.19.2 vs. uniprot
Match: A0A024TTX4_9STRA (DUF4515 domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TTX4_9STRA)

HSP 1 Score: 209 bits (532), Expect = 1.260e-56
Identity = 153/464 (32.97%), Postives = 274/464 (59.05%), Query Frame = 1
Query:  283 TPAYPGVAELTRQLDQEKVAMLSKRVDDLRNQNQDLKNKIFKSENDTHEFVAYFQKEMETKDGMISKLNDELIRKESEMRVTVKHLQEKA---LRELAEATEQMTHKEKMLTNQIKNLEGDLSALARFRELRDSHNKAMEDMAAAVEAKAQAHAQEMIDLERKLLTDKGNLQKDLERVIEDVRRQAKIEAHSSLGGETKRIAGENKRLAKELRFQMQMTKELEAHSKALEDQTTNTARDVAIFKDKDQEYARQGQAKNKELKQLREQVAALSKALMEEALKGRREGDRARQDVARELEEQALDGAGLRQLLVLKNRELRNVRKLSHPFL--RLSMHTTK------------QVETFFLEALQEVRQRIVNGRQAQYRRAVVEYNMRVREASRNRTKFPKIRDISALDPGAPSSLPTDPDTKVDISALKWEDKERVLRILFAKINNAQGYVDATPEHPLEAASAA 1623
            T  +  +  L  Q++  KV +L KR+++L+ +N+ L+    K+E +THEFVAYFQ+E+  ++ + +KL+++L    ++     + ++ K     + L + ++ + H    L++++K  + DL+ L  FR++++S  K ++ +   ++++  AH   +  +ERK L +K   QKD ++ IE +++Q++ +A + L  +T++I  +NKR+ +ELRFQ+Q T+EL     ALE  T +   ++ +  DK+ EYA+ GQ + +E+KQL+ +V  L K+L +      +E         +EL++ +LD  GLR+LL LKN+ELRN+++L+   L  R  +  +K            QVE FFL++L  V+Q++V+ R+       V+ + ++  A R   KFP+++  S+     P   P  P  KVD+ AL WE++ERVLR+LFAKIN+ QG++D  P  PL+ A ++
Sbjct:    5 TKDFSALDALNAQVEGSKVDVLKKRIEELQAENEHLRCLHQKNEKETHEFVAYFQRELGAREKVTAKLSEDLSEARTKFHDETEEMKVKYDVDTKHLVQTSKLVEH---TLSDKLKIAQEDLAKLELFRDMKESLEKKLQQLTDTLDSERVAHKDAIGMMERKFLEEKARHQKDTDKRIEKIKQQSREDARNVLDADTRKIVTDNKRMGEELRFQLQTTEELTKDKIALEHLTKSLKCEIQVHADKELEYAKYGQKQTREIKQLQAKVKTLEKSLCQVVHAFEKEKVLLATKTEKELDDVSLDADGLRKLLKLKNKELRNMKRLAQTILDQRTDVSASKSSRCHDTVGVFVQVEQFFLDSLDMVKQQLVDERKRTADAEKVQ-DAKLTPAERG-LKFPRLKTRSSAGNQQP---PLGPRDKVDLRALTWEERERVLRLLFAKINSIQGFLDVPP--PLDDARSS 458          
BLAST of mRNA_P-littoralis_Contig152.19.2 vs. uniprot
Match: A0A662X256_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X256_9STRA)

HSP 1 Score: 213 bits (541), Expect = 5.590e-56
Identity = 161/448 (35.94%), Postives = 248/448 (55.36%), Query Frame = 1
Query:  304 AELTRQLDQEKVAMLSKRVDDLRNQNQDLKNKIFKSENDTHEFVAYFQKEMETKDGMISKLNDELIRKESEMRVTVKHLQEKALRELAEATEQMTHKEKMLTNQIKNLEGDLSALARFRELRDSHNKAMEDMAAAVEAKAQAHAQEMIDLERKLLTDKGNLQKDLERVIEDVRRQAKIEAHSSLGGETKRIAGENKRLAKELRFQMQMTKELEAHSKALEDQTTNTARDVAIFKDKDQEYARQGQAKNKELKQLREQVAALSKALMEEALKGRREGDRARQDVARELEEQALDGAGLRQLLVLKNRELRNVRKLSHPFLRLSMHTTKQVETFFLEALQEVRQRIVNGRQAQYRRAVVEYNMRVREAS--RNRTKFPKIRDISALDPGAPSSLPTDPDT---------KVDISALKWEDKERVLRILFAKINNAQGYVDATPEHPLEAA 1614
            A   RQ+DQ+K+  L+ RV  L++++  L+ +  K E +THEFVAYFQKE++T+D  ++KL +EL        + ++ +Q+    E    T+Q    E+    Q+  L  +L  L  FRE++DS    M+D+ A +  + +   +    LERK L +K  LQK+ E+ IE V++QAK +A + L  +T++I  +NKR+ +ELRFQ+QMT+EL+   +  E +      ++ +   K+ EYARQ Q + +EL QLR  +    + L        R+         RE EE ALD  GLR+LL LKNRELRN+R+L+   L         VE FFL+AL+ V++ I   R+AQ  +    Y+  V  +   +   +FPK++  + L+  A       P++         KVD+  L WED+ERVLR++FAKIN +Q YVD   + P   A
Sbjct:  221 ALFNRQVDQQKLETLAARVAQLQDEDAALRARHDKREQETHEFVAYFQKEIQTRDKQLTKLGEELATARLTHALMLEQMQQTRDAERQHLTQQAAANEEASAEQLFYLREELHQLELFREMKDSIAAKMKDLEAQLVLEKEQARESDGALERKFLEEKARLQKEHEKKIEVVKQQAKEDARNGLDADTRKIVTDNKRMGEELRFQLQMTEELQREKQHFEARAKTLQVELQLQVQKEGEYARQAQRQTRELTQLRSSLREAEQRLGAGLAAAARDTQTNVTRGEREREELALDVDGLRKLLRLKNRELRNLRRLAQTVL----DQRTDVEQFFLDALEHVKREIERERKAQRDQEFERYHREVNRSQGLKPSLRFPKLQSPNNLNHAATVGARQAPESPSSQQHFSEKVDLRQLSWEDRERVLRLVFAKINGSQSYVDMQGDAPAHTA 664          
BLAST of mRNA_P-littoralis_Contig152.19.2 vs. uniprot
Match: W4FYK7_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FYK7_9STRA)

HSP 1 Score: 206 bits (525), Expect = 1.140e-55
Identity = 150/442 (33.94%), Postives = 260/442 (58.82%), Query Frame = 1
Query:  292 YPGVAELTRQLDQEKVAMLSKRVDDLRNQNQDLKNKIFKSENDTHEFVAYFQKEMETKDGMISKLNDELIRKESEMRVTVKHLQEKALRELAEATEQMTHKEKM----LTNQIKNLEGDLSALARFRELRDSHNKAMEDMAAAVEAKAQAHAQEMIDLERKLLTDKGNLQKDLERVIEDVRRQAKIEAHSSLGGETKRIAGENKRLAKELRFQMQMTKELEAHSKALEDQTTNTARDVAIFKDKDQEYARQGQAKNKELKQLREQVAALSKALMEEALKGRREGDRARQDVARELEEQALDGAGLRQLLVLKNRELRNVRKLSHPFLRLSMHTTKQVETFFLEALQEVRQRIVNGRQAQYRRAVVE----YNMRVREASRNRTKFPKIRDISALDPGAPSSLPTDPDTKVDISALKWEDKERVLRILFAKINNAQGYVDATP 1593
            +  +  L  Q++  K+ +L KR+D+L+ +N  L+    KSE +THEFVAYFQ+E+  ++ + +KL+++L    SE +       E+   +    T+Q++H  K+    L++++K  + DL+ L  FR+++DS    +  +   +E++  A    +  LERK L +K   QKD ++ IE +++Q++ +A + L  +T++I  +NKR+ +ELRFQ+  T+EL   + ALE  T     ++ +  DK+ EYA+ GQ + +E+KQL+ +V  L K+L +   +  +E         +EL++ +LD  GLR+LL LKN+ELRN+++L+   L         VE FFL++L  V+Q++++ R     + VVE     + ++  A R   KFP+++  S+        +P     KVD+ AL W+++ERVLR+LFAKIN+ QG++DA P
Sbjct:   14 FSALEALNNQVEASKMDVLKKRIDELQAENDHLRFLHKKSEKETHEFVAYFQRELGAREKVTAKLSEDL----SEAKTRFHDDTEEMKLKYDVDTKQLSHTSKLMELTLSDKLKVAQEDLTKLELFRDMKDSLENKLVHLTDTLESERVAQKDALGMLERKFLEEKARNQKDTDKRIEKIKQQSREDARNVLDADTRKIVTDNKRMGEELRFQLITTEELTKENMALEQTTKALKCEIQVHLDKELEYAKYGQKQTREIKQLQAKVKTLEKSLCQVVHEFEKEKQLLTTKTEKELDDVSLDADGLRKLLKLKNKELRNMKRLAQTIL----DQRTDVEQFFLDSLDIVKQQMLDER-----KRVVEAEKLQDAKLTPAERG-LKFPRLKTRSSSVGNNNQHVPLGVKDKVDLRALTWDERERVLRLLFAKINSIQGFLDAPP 441          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig152.19.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRG7_ECTSI1.320e-23870.26Sideroflexin 2 n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A836CKC3_9STRA1.370e-8739.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UZS8_9STRA2.410e-8540.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y4I6_AURAN2.430e-6938.82Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A485LPB6_9STRA3.120e-5935.16Aste57867_22131 protein n=1 Tax=Aphanomyces stella... [more]
A0A662WS35_9STRA1.790e-5735.65Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A8K1CGG6_PYTOL3.980e-5733.96Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024TTX4_9STRA1.260e-5632.97DUF4515 domain-containing protein n=3 Tax=Aphanomy... [more]
A0A662X256_9STRA5.590e-5635.94Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
W4FYK7_9STRA1.140e-5533.94Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig152contigP-littoralis_Contig152:76118..86475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRG7
Preferred nameCCDC176
PFAMsDUF4515
Model size1968
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005815,GO:0005856,GO:0005929,GO:0006996,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0036064,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons12
Evalue6.18e-241
EggNOG OGs28J0W@1|root,2QRCW@2759|Eukaryota
Ec32 ortholog descriptionsideroflexin 2
Ec32 orthologEc-18_004470.1
Descriptionmotile cilium assembly
Cds size1707
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig152.19.2prot_P-littoralis_Contig152.19.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig152 76379..86475 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789726.4070513-UTR-P-littoralis_Contig152:76117..763781680789726.4070513-UTR-P-littoralis_Contig152:76117..76378Pylaiella littoralis U1_48UTRP-littoralis_Contig152 76118..76378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789726.418972-CDS-P-littoralis_Contig152:76378..765101680789726.418972-CDS-P-littoralis_Contig152:76378..76510Pylaiella littoralis U1_48CDSP-littoralis_Contig152 76379..76510 +
1680789726.4337337-CDS-P-littoralis_Contig152:77439..775561680789726.4337337-CDS-P-littoralis_Contig152:77439..77556Pylaiella littoralis U1_48CDSP-littoralis_Contig152 77440..77556 +
1680789726.4430234-CDS-P-littoralis_Contig152:78146..782181680789726.4430234-CDS-P-littoralis_Contig152:78146..78218Pylaiella littoralis U1_48CDSP-littoralis_Contig152 78147..78218 +
1680789726.4520676-CDS-P-littoralis_Contig152:78549..786201680789726.4520676-CDS-P-littoralis_Contig152:78549..78620Pylaiella littoralis U1_48CDSP-littoralis_Contig152 78550..78620 +
1680789726.4619172-CDS-P-littoralis_Contig152:79027..791661680789726.4619172-CDS-P-littoralis_Contig152:79027..79166Pylaiella littoralis U1_48CDSP-littoralis_Contig152 79028..79166 +
1680789726.4769099-CDS-P-littoralis_Contig152:80202..803341680789726.4769099-CDS-P-littoralis_Contig152:80202..80334Pylaiella littoralis U1_48CDSP-littoralis_Contig152 80203..80334 +
1680789726.4868188-CDS-P-littoralis_Contig152:80661..807901680789726.4868188-CDS-P-littoralis_Contig152:80661..80790Pylaiella littoralis U1_48CDSP-littoralis_Contig152 80662..80790 +
1680789726.4956422-CDS-P-littoralis_Contig152:81822..819181680789726.4956422-CDS-P-littoralis_Contig152:81822..81918Pylaiella littoralis U1_48CDSP-littoralis_Contig152 81823..81918 +
1680789726.5083148-CDS-P-littoralis_Contig152:82592..826931680789726.5083148-CDS-P-littoralis_Contig152:82592..82693Pylaiella littoralis U1_48CDSP-littoralis_Contig152 82593..82693 +
1680789726.519934-CDS-P-littoralis_Contig152:83312..834951680789726.519934-CDS-P-littoralis_Contig152:83312..83495Pylaiella littoralis U1_48CDSP-littoralis_Contig152 83313..83495 +
1680789726.5286906-CDS-P-littoralis_Contig152:84854..849931680789726.5286906-CDS-P-littoralis_Contig152:84854..84993Pylaiella littoralis U1_48CDSP-littoralis_Contig152 84855..84993 +
1680789726.5441718-CDS-P-littoralis_Contig152:86079..864751680789726.5441718-CDS-P-littoralis_Contig152:86079..86475Pylaiella littoralis U1_48CDSP-littoralis_Contig152 86080..86475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig152.19.2

>prot_P-littoralis_Contig152.19.2 ID=prot_P-littoralis_Contig152.19.2|Name=mRNA_P-littoralis_Contig152.19.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=569bp
MAGLGDMTPAYPGVAELTRQLDQEKVAMLSKRVDDLRNQNQDLKNKIFKS
ENDTHEFVAYFQKEMETKDGMISKLNDELIRKESEMRVTVKHLQEKALRE
LAEATEQMTHKEKMLTNQIKNLEGDLSALARFRELRDSHNKAMEDMAAAV
EAKAQAHAQEMIDLERKLLTDKGNLQKDLERVIEDVRRQAKIEAHSSLGG
ETKRIAGENKRLAKELRFQMQMTKELEAHSKALEDQTTNTARDVAIFKDK
DQEYARQGQAKNKELKQLREQVAALSKALMEEALKGRREGDRARQDVARE
LEEQALDGAGLRQLLVLKNRELRNVRKLSHPFLRLSMHTTKQVETFFLEA
LQEVRQRIVNGRQAQYRRAVVEYNMRVREASRNRTKFPKIRDISALDPGA
PSSLPTDPDTKVDISALKWEDKERVLRILFAKINNAQGYVDATPEHPLEA
ASAAAFAAATAGGGASLDHDHDSNGENSRHVPPGNSRTFVTQENTAAVKA
AASRSSLEELSERDIGGSGGGRGGGDDGSGSVLAPGGGNSTSTSLSPRCE
SQASLLSGVSHQPQAPLI*
back to top

mRNA from alignment at P-littoralis_Contig152:76118..86475+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig152.19.2 ID=mRNA_P-littoralis_Contig152.19.2|Name=mRNA_P-littoralis_Contig152.19.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=10358bp|location=Sequence derived from alignment at P-littoralis_Contig152:76118..86475+ (Pylaiella littoralis U1_48)
TCTCAGTCAAAAGTTATGGAGGGACAACCAAAATCGGGTCCTTGAAAATT ACCACTTTAGCGCCTTTGTTTGCGCTGGTGTGATGCTACATACTGTTGGT GCTGTTCTGCCCACTGATGTCAAAAACAATTGCGCCGCATTTCGTGTTCG CCGTTTCAAGACTTCTCACACAACGCCGACTTCCCGCCTCATGACTTGTT TTTGACTGTTCAAAGCGTAGGCGCTCGCCGCGCGAGGCGGTCTACGGTCT ACCAAGGGGCCATGGCGGGTTTGGGCGATATGACGCCGGCTTATCCGGGG GTGGCCGAGCTCACGCGCCAACTGGATCAGGAGAAGGTGGCGATGCTGTC CAAGAGGGTCGACGATTTGCGGAATCAAAACCAAGACTTGAAGGTGCGGC GGAATGGTGATGGCACGAACAAGGGAGGAACGTCGCTGCGCGCATAGTAG TACAGCAGTAGTGTAGTGGACGGTAGCACGAGGAAAAGACTACTGGCCGC GGCTGTGGTATCACCCATGACCTCCTCACTCCATAACTTTAGGTTACGTG GAAGGTGTGAAGTTTGTCGGCCGAATTTTGTGAAATGCTGCGTGCAAGAG TGTGAGCTCTCCTCATTGGTCGTCCGAAGTATGCTATGTGACGTAGTCTA CATGTGCCTCCGGAGATCATCCAATTGATTGTGATGTCGTGTTCTTGAGC ACAATGAGCAGCAAGGCAGGCACCCCATGTTTTTTGCCGGTGCGTGGACA TCCCCCGCCACCAAAAGTATAGTACGTGTCCACCAAAACTCGTTGCGTGT GTATTATCCAGTCCACAGCAGTATACGTGAAAATCTCGAAGTAATAATTC ACGAACACCACAATAATACTGCTGTAATGGATAATACTCCGTACACACGC AACGACGGCGTGTATCTAAGCCACACCCACCGGAGCTGTTTTAGACCGCG ATATCCCCCCAGCGGATGGGTGTTGGCGCCGACAAGGGCGGCGTTGGAAC CATGCCGTGGAGGGTACGAAAAGAACGTGTCTATGGTTCCGGAGCCGCCG TTTTTCGACATCGACACTCACGTATTCCTGCCTGTGCAGATGTCCCGCTT TGAAAGGGAGAAAAAGGGCGCGTAATGCACACCACCGTATAAATACGGTG TGTAGATTCATGCTTTGTTCCAGGAAGCGGGTCGTTCCAGGAAACGGGCC AGGGGCACCCTATAGCTGTCCAGGGGCTATTCTACGGAGAATTGTTTGTG ATTTTCTCGGAAACCGTCTTTCTTTCTCTCTTTTTCTCCGTCTCTCTCTG TCTTTCTCTCTCTCTCTCTCAGAACAAAATATTCAAGTCGGAAAACGACA CCCACGAGTTCGTCGCTTATTTCCAGAAGGAAATGGAAACGAAGGACGGA ATGATTAGCAAGCTGAACGATGAACTCATACGAAAAGAGGTGCGTACTGT ACGGCACGTACATGCGTGCGGGAGTTTTCGTGCAGGGATGGGCGGGTTTT GGAGGCGTCATTGCGTTTCCAGTGCTTCTTCACGGAAACCACGGTACTCT GCCAGCAGATCCAGGGGCTTCGATCAGCTTACAGTACAAAATACTGTTGA AGGTTTCGTTCTCTGACCTCAAAATCAAAACAGTCTTCAAGTAGCAGCCG GGTGTTGATTTGTTTGCCCCTCTGGCACAAGGTAAACCAAGCCAGCAAAC CAAGGATAAGCTGTTCATAGACTGCTGCTGTAGCACCGCTGGTGTTTTGC GTGTGTAGATATAGAGTTTCGTCGGCAGCACTCACGGTGGTACCTCGTCC GGTGAGCCTTTGGGAATACAGTATTAACAGTCTTGCTAACCGTGCCCAGT CGCTTCATGCTCTTAGTGATTGAGGTACTGTTGTGGCGTGTTATTGCCTG TTCCTTGATTTAATTGATTGGCACTGTCCTCTAAGGTGGAGAATTGGAGG AGTGCTTTCTCACACCACCCTCCTATCTCCGAATTCACCTCCAAGCACAT TTCCACCCGTCTCTCTCGCACGCCTCCAGTCGGAGATGCGAGTGACTGTG AAGCACTTGCAGGAGAAAGCACTGCGTGAGCTGGCGGAAGCGACAGAACA GGTACTGCTTTTGGTCAGACGAAGCCAGGCGTGCAACATAAACAGTTGTA CTGAACTTTGAAGTTCAGTTGGTGACCGCAGATATGATAGCGCGGCCTCA CAATGTTTGTCGGTACAGCCAGCAAGAGTAGCCGTTTCGTTTGCAGGCAC AAACCAGTCATTCGTGAAGATGAAGAAAAGGCTTATTTTCGTTCGATTGA AACCGCGAACAATTAACCGTGGCTTTCATCTTGTGTGTAGAACCGACATT GACGTGCAACAGCTTCCCCGGTGTCCGATTAGGAACATCACCCTCCCCCC CCCCCTCTGACCCGTCCATTTTTTCGCTGCAGATGACGCACAAGGAAAAA ATGCTGACCAATCAAATAAAGAACCTCGAGGGAGACCTGTCAGCTTTAGC TCGGTGAGGACTGACGGTACTGTTATCCTTCAGCAGGAGTAAAGCAGCAA GCACAAACCTGACGAGAAGTTGAGTAGGGCACAACAATCCACTCGAACAA AGCATGGTTGTCTGGATTGCATCGTCTTTGTTTGTTGATTGAACTAGCAC CCATCGTAGGGGCCACACACGCCGGCTCGCGATTCTAAGCAAACAACTGA AGGAGGGTTCAGAAGTCAATGACTCTTCACGTCCAAGAGAACGCGGGAAT CCTCTCGTGTTATTGCTTGTTCATCGAAAGCAGGCGCTTGTGTTGGCTCC GTCGTGGTGGTCGGTTGCTTGGTCGTCGGTTGGTCGATTCGTTGATTTGG TTAGTGTCCGCGTTGCTTGCCAATGGTTTCTATGACCTTGGTATCATATA CCACACCAAGGTTCCGCGAGCTGAGGGACTCCCACAATAAAGCGATGGAA GACATGGCGGCGGCTGTGGAGGCCAAAGCGCAGGCGCACGCGCAGGAGAT GATCGACTTGGAGAGAAAATTGCTCACGGACAAGGGAAATCTGCAGAAGG TGAAAATCTGCAGCTCGCGTCCTTGAAGACCTTTGTTTCCCAGGAAAATC GTTCATGAACGAATTTTTCGGAGAAAAGAGGGTTTTTCACAATGCCGTCA AACAGAGAACCAGAGGTTTGGGATGTAAAGCTGACCAATGCGTTTGGTAC ACTTTGAGGCAGCCCGGCCACCGCATGTATTCCAAATATGTCTGCCCAAA AGAGACAATAGGGGAACTAATGGACGAGTTCTGAAGGCCAAATAGAGCTT CCTGGAAAACATCGGCCTCTTCGAGGACTAAAGCTGTATCGGACTTGGCT GCGCAACAGCATTCGAGAGGATCTTTATTTTGGGCACTCGAATATTTGCA GCGAGCGTGTAAAATGATATGATATGGGCGTTCAAGATTCTCTGCAGAGT CTCATAACGATTTCCGGGCCAACAATTATCTGCGTAGCATAGTTGGAAAC AGATAGATGCTCTCTAGTACTTCAGGCAGTTCCCCATAAGACGTCTGTCG GACGCGGCGGCCGCCCAGAGTTGTATCCGCTTTCCGGCCGACCCGAGGAG GGTACGTGACAGCATACCATGGTACCAGATGCAACATCTAGATTCACACA CAACTACAAACAACACGGTGTGCAAACATGCTCGAAGGTACGAAACAGCA TACCATGGTACCAGGGTAACATTCAGATTCACACAATACAAACGACACGG TGTGCAATCATGCTCGAAACCCCGCGAACGAATCGACCCGGTTCCTCCAC TGAAAACGGACGTTTGAGACCACCGCTTTTCTGGGAACATTCCGATATCA TACGATTCGAGCGTATTGACGAGCACCTCCCCCCCCCCCGACCCTGCCGC AGCCGTAGTGTTTTTGTTCTTTTGACGGCGAGGCGATGCTTTCATAGACA CACGACAGATAGAACGCTCGAGTACGTCTTGCCCCCACTCGCGGATAACT CTTCACTAATACTAGAGCGGTGAGCTTCGTATCCTCTTCCGCCATCATCG ATCGCGGTCCGGTGGTTTGGCATCATCTGTGACAGGACCTGGAGCGTGTG ATTGAGGATGTTAGGCGCCAGGCCAAAATTGAGGCACACAGCAGCCTTGG CGGGGAGACGAAGCGCATCGCGGGAGAGAACAAGCGCCTGGCAAAGGAGC TTCGGTTCCAGATGCAGGTAGAAGGTGGCGCAATTTCGTTTATTTTGCAA CAGGCACTTTTCTTTTTTTTTGTGGATAAATCACAAACAAACACAAGAAA GGGAGAGCGTTGTGTTGAAAGAGCGTTGCCTTGAGCTGCTGAATACAAAA ATATCTTAAGGCGGCGCTGTTTCGCTCAAGTTGTTCCGCCTCGAGCGGTG AAGGGGGGTATTTCTGAACGCATCTGTATATATGTATCCCTTTACACACG CTGGCAGGCTGACTTGCGTAAGAAAACGTTTTGTGTGTATTTTTGCCCCC CTTCCCCGCGCGTGCCGTCCGCAAATGAACCTCGGTGGCGACAGATGACG AAGGAGCTCGAGGCCCACAGCAAGGCTCTGGAGGATCAGACCACCAACAC TGCCAGGGATGTCGCCATCTTCAAGGACAAGGACCAAGAGTATGCCCGGC AAGGCCAGGCTAAGAACAAGGAGGTACTAAAAGTTCAGAAATGGTGTCAC GTGTAGGTTTATTCTTTGCCAAGAAGGACAAGAAGTTGCTCTTACATGAA AATTGTGGCACATGCAAGTTTGTTTTTTGCAAGGAATAAGGAGGCACTCT CACAAAAATGGTGTCACACTACATATGTAAGTTTGTTTGTTTAACACATG TCATTTGGTTTTCTTGGTAAACTGAAAGCAAGCACACCAACCAACAATGC CATCGCGCCTGATGCTGCCCGCTTGCTTGCAAGATGTGTTGGGCCATATG TATCACATCGTATGCATCCGATGATGAGTCACCTTGGCCCGCTCGACTCG CGACAGCTATGAAGCGCTAGGGTGCTTCACGCTCTCTTATAATCACACTA ACTTATCGTGGATCTATCAATACGGTTGATACACAGGTGCCATGCTTCGA ATTATCTTGATTGAGTGTGGATTTCGTCGCGGAATGTCGCGTGCCATGAG CAGCCTTTTGTTTTTTGGTACGCTATTTCATTGCGTCGTCACCAGACCAA CCCACACAGGAATTACAAGCTGTCCTCTCCAACCAAGCAGCCATGACCAA CTCCCTTCGAAAAGCCTCTTGTTGCGTATGGAGAAGGAATAAGGCGTACG TCACAGAATTCTACGTAATTATAGCTTATCGGAACACTCTCGAATTAAAG TCGAACCCAGATTATGCGGGCTTTTTTCTTCTTCGCAGTCCCGTCCGTTT GTCACTACACGCCAGCCAGCAGTAGTGGCACGGGCAACACCCAGACTCCT CCGACCCTTCAAACACGCCCCTTTTCCCCCCCCTTATTTCCCGGAGGTTG TTTGCCTTGCCCACCGCACTTTCCCTCTGCTACTTAATCTTCGTCTGCCG CGACCCTCGCCCCTGTTCCCCCCTCCTCTGTCGGCCTCACACCGCCGTAC TGGAATTGCTATTGTTGTTGTTGTTGTTGTTGCTGTTGTGTTGTTGTTGT TGTTGTTGTTTTAATGTTATGCCCCTGCCTGCCGTCGGCCCCAACGAGAC AACAGTTGAAGCAGCTGAGGGAGCAGGTGGCGGCTCTATCAAAAGCTCTA ATGGAAGAGGCGTTGAAGGGCAGGCGGGAAGGAGACAGGGCTCGGCAAGA CGTGAGAGCCTCGTGGAACATGCTAACGCTACACGAAGAAATTACCCGCG GAAATATCTGCGGGTTGACTACTAGTACAGACAGTGAGACTCACGGAAAT TTCAGGAACAAGAGGAGGCTTTCTTTAGCACTCAGTCACCGGCCATTGCA CAGAGAGGGCCTGACATTTGTTTTTCTTCTGCACATGCTGTAGGTACGAG AGATTGACGAGTTAGCTTCGGTTTTGGTCGTACACACGGGGCGTTTGTCA TTCTAGTGCATGTACTACGTGTGACGGAGTTCACTTCGGCTGTGCACACG TCCGGGGATTCGATCAAAGGCGAAAGTCAATTCCCAAAACAAATACCGAC GAAAAAACCTTCACAAAAGTCGGAAACCGAAGAATAAAAACTATTCCTAT TGTGTATGGTTTTCGCTAAGAACAGGCGATGCCCAGGAGGGGGGGCGGGC ATTCAATGGGTGAAATCTACGGCAGGCAGGCCGTAGCATTCTTGATTCAT TTTTGTTAGCTGCCGGGTGCGGAGCGAGTCCTGCAACACGGGTTGCCTCC GTCGTGTGCATCTTGTGTGCAACATCATTCGAATGTGAGAACAACAAGCT CGGTGAATTAGGCCTCGTTGCCGCTTAATCCGTCACGTACGTTCGTGCGT ACATGTGATGAATGATACGTCCAAGGTCGCGCGTGAGCTGGAGGAGCAGG CCCTCGACGGAGCGGGGTTGCGGCAGCTGCTGGTCCTTAAGAACCGGGAG TTGAGGAACGTTCGGAAGCTGAGCCAGTACATCCTGGACCAACGAAACGA GGCACGCATGATGGCATGAATGCCACCATACACATACATACATATCATGT CATATCATGTCATACCATATCATACGTACATACACAACAAGTTCGAAATA TATCATACATGCAGACAAGTGCTCCTTCAGTCATCTCACGAGGGCCAACG AACCTGTGCATCATACCCAGGGCGATCAGAAGCCTTGAAGTCATATCATA TCTGCCGATCACTCTATTCTAGGAAAGTATGCATGGTATACCCTGGAGAC GCGGAGGGCGGTTGTTCCCAATCTGCCACACCACCGCTCCTGCCGCAAAA CTAACGCACATCATGCACCCTGGTTTCAACGTTTTGAAAACACGAACAAG TTTTCCGAAAGAACAGGGCAAATCTCGACCGTGTAGTCTAGGGATGGGCA TCACGACGAGAGCGCACTCACTCCTAGCCGTATCGAGCAACGTGTAGGAC GTGAAGAACTCAACGTTGTGAGCGAAATCGTCAATGATTTATTAAGTTTG TGGGTGTCAACGCTGCTATCATATCATACGCAACAATGATGATGTCAGCG AAGTCATCGAAAAATTCAACATTCATGTGTGACTCTCGTTTTGAGTCCCT TTTTGCGTCTGTCTATGCACACAACAAAACAGGTGGAAACCTTCTTTTTG GAGGCTCTGCAAGAAGTGAGACAACGCATCGTCAACGGCCGCCAGGCGCA GTACCGGAGGGCTGTGGTGGAGTACAACATGCGTGTGCGTGAGGCCAGCA GGAACAGGACGAAATTCCCCAAGATAAGGTAAATAAAAAAAAATGCACTG GTACCACCATACATACATGGGTATGAAACACAACAGGTGGTGTACTTTAT TGCCAGCTGCTCTCCCATTTTTCGCACACAAGTTTGGCAGGACTTCAACC AAGTTTTCCGCGCGCCTCGACCAGAAAGTTTGTACAACAGAGTTGCCTCA AAACAAAGGTAAAGGGCTTGTTTACTTTCTTCTCTCTCTTTCTCTCACCT GAATACTGGTCCTACACATTAGCCGTTCACACACGGTCTCATTCTTTGGT ATCCCCCGTCATTTTCCCTCCCTCTGACGAATGGTTCATTCACCGACTAT TTGTATGTGCATGCCAAGCGGTTATTTCGGTGGCCTCCGTCATCGTCTTG GCGTATTTCGTCGGCGCTCGCGTGAAGTCATCCGAAGGAGGAGAAGTGTC GATTTGGTGGGGGGGGGGGCGACTGGAAAATCGATTTATAGTTGTTGCGG TTGAGATGATTCGAACATTTATATATTTGCACCGCCGTAGCCACTCTGTT GAGATAGTTCTATCATAGCGAAAACATTTAATATGTTTGTGTGTGTACTG GTTGATATGTACTCATATCCACTGTACTACCAGTCAGCGCTGACTGCCTA GGTCGTCAGTGGATATGTTGTATATCAACATGTACCCCGCCGCCCAGGGC CTGGGATAACTTACTTCTCTCGGACTAAAAGCGGACCACGGTGTGGTACG CTCCAGGAAAGCCCCAGGAAAATTCGTGTGTGTCTTCGAGTAAAATTGAG GCTCATCTAACTTTCCCGGACCGATGCCGGCCGGTGACGACCGCCTATTC CCACCTTTGCCTGTCTTTAGCCGGCCGCGTCGCTGCGTTGCCACCCCTTC GAGTGCAACCTGTAGTAAAACGATACCTCGTTCGCCACCGACGATCCGGC AATATATAGCTCGCGCAACACCTCTCTTTGTATCTGACCACGCGGAGGAA GTGCCGAAATGTCAACGTTCGTACCGTACGAAAACCACAATATATTCGTC TACCCTAGCTTGGTGGGTGGTCTGACTCCCATGTCTACAGAAGCGGCCCT CACGCAAGAACGTTTATTTTGTGCAAAACCCTTCCTTCTTTCATGATCTT TGTGGGAAACCAACAGGGAATATACAGGTTTTGGTGTCAAGTGGGGTTCA AGGTAATATATTTCGTGGAAGTTGAACCCGACTTCTTTACTTCTTACTGT GAGTTCTGAGGTCAGCGCCGCATCTGTACCGCACATAAGATAAGGTGAAC TACTGTTTGACTCATTTCTCCAGGTTTCGGTGTGTGTGTTTGTGTTGTAA TTCGTACAATGCACGGCTTTGGCTCTGGTTCTTCTAGAGATATTTCGGCG TTGGACCCAGGCGCGCCATCGTCTCTGCCGACGGACCCAGACACCAAGGT CGACATCTCCGCGCTCAAGTGGGAAGACAAGGAGCGGGTCTTGCGTATCT TGTTCGCCAAGATCAATAATGCCCAGGTAGGTCTGCCACAGACAGTCAAC GCTGTTACAACAGACTTACAGCAGCAGCAGCAGCAGCAGCGTAGCTTTTG TTTCACGAAGTTTATAAAAAACCTCTCTTTCTATCTCCGACGACGTGACA ATTAATTTCCCAATATACCCTCGAGAACACCGTACAGATCCCGAAAATAG CCTCCCCCTGCAGTATGTATGACAACACACGGACCTACTGACGGCGGCGC TCTATGATAGTTTCCACATCAAAAAGCCAAAAAATGGAGCATGATTTTTG CTCTTTTTGGGACCTCCCGAAAACCTTTTATGTGAAGGGTGGTATTGGTG TCTGAAATAATGACGCTGGGGGAGGGGGGGGGTGGGGGCGTTCGCGTTCG TTGCTTGCCCCACACTAGGAAAAATGTTTAGTGACCACGCATCATCATTC CTTTTGCGATGGAGTTCCCTTTCTACTCTGAATAGAATCGCCACCAACGT TTATTTGGGCGCTCGTCATTAATGTTGAACACTAATTCATCAAGGGGGGG GGGGGGGGGGCTTGGCACTTGACACACACGTACACACACGAAGCAATGAG CCGGTCAAATCGCGGGCGTAGCCGCCCGCTGGTAACTTACATCACCCGGG GTGGGCGTGAGATAGGGTTTTGGCGTTCTTCCACTCAATCAAGTGTTTTT TCCGAGATTTATACGGAGTATATGACATCATTTTGATTAAACTTTAGTCA CGCGTACGGTCCACCTTTTTCGTTCCCGTGTTCGACGCTACGAGCTCCAC CATGCTACTTACAGTAGCAGTGCAATATTTACTTCGTATGTGGTTTGCTT CTCAGTGCATGTACTGTATGGGACGCAACCCGTTTGGAAGCCGTGTTTCG CCCTCGGATGGGGTGGGACTGCGATTGACGTGACCGACATCTTGCGAGGA TTTTTTTGTTTCGTGACCCCCTCTTCTTCTCCGGCCCGCCCCTTCGCCGT CAACATCCCATCTCCTCCGATACTATACCCTGATGTTTCTCTCTGTTCTC CTGTTGCTGTGCATCTGTGTCTCCTGCTACCACTACTACTCCTATTACTA CTACTCCTGCAGGGATACGTGGACGCTACCCCGGAACACCCCCTCGAAGC AGCTAGCGCCGCGGCCTTCGCTGCCGCCACAGCTGGAGGCGGCGCCAGTC TAGACCACGACCACGATAGCAACGGAGAAAATTCCCGACATGTACCACCT GGTAATAGTCGGACTTTCGTAACCCAAGAAAACACGGCGGCAGTAAAAGC AGCAGCTAGTCGATCGAGTCTCGAGGAGCTCTCAGAGCGCGATATTGGGG GCAGCGGCGGCGGCAGAGGGGGGGGTGATGATGGATCGGGGTCGGTGTTG GCGCCCGGGGGAGGGAATAGTACCAGTACGTCATTGTCGCCGCGATGTGA ATCTCAGGCTTCGCTGCTTTCGGGGGTCTCACACCAGCCGCAGGCCCCTC TAATATGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig152:76118..86475+

>mRNA_P-littoralis_Contig152.19.2 ID=mRNA_P-littoralis_Contig152.19.2|Name=mRNA_P-littoralis_Contig152.19.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1707bp|location=Sequence derived from alignment at P-littoralis_Contig152:76118..86475+ (Pylaiella littoralis U1_48)
ATGGCGGGTTTGGGCGATATGACGCCGGCTTATCCGGGGGTGGCCGAGCT
CACGCGCCAACTGGATCAGGAGAAGGTGGCGATGCTGTCCAAGAGGGTCG
ACGATTTGCGGAATCAAAACCAAGACTTGAAGAACAAAATATTCAAGTCG
GAAAACGACACCCACGAGTTCGTCGCTTATTTCCAGAAGGAAATGGAAAC
GAAGGACGGAATGATTAGCAAGCTGAACGATGAACTCATACGAAAAGAGT
CGGAGATGCGAGTGACTGTGAAGCACTTGCAGGAGAAAGCACTGCGTGAG
CTGGCGGAAGCGACAGAACAGATGACGCACAAGGAAAAAATGCTGACCAA
TCAAATAAAGAACCTCGAGGGAGACCTGTCAGCTTTAGCTCGGTTCCGCG
AGCTGAGGGACTCCCACAATAAAGCGATGGAAGACATGGCGGCGGCTGTG
GAGGCCAAAGCGCAGGCGCACGCGCAGGAGATGATCGACTTGGAGAGAAA
ATTGCTCACGGACAAGGGAAATCTGCAGAAGGACCTGGAGCGTGTGATTG
AGGATGTTAGGCGCCAGGCCAAAATTGAGGCACACAGCAGCCTTGGCGGG
GAGACGAAGCGCATCGCGGGAGAGAACAAGCGCCTGGCAAAGGAGCTTCG
GTTCCAGATGCAGATGACGAAGGAGCTCGAGGCCCACAGCAAGGCTCTGG
AGGATCAGACCACCAACACTGCCAGGGATGTCGCCATCTTCAAGGACAAG
GACCAAGAGTATGCCCGGCAAGGCCAGGCTAAGAACAAGGAGTTGAAGCA
GCTGAGGGAGCAGGTGGCGGCTCTATCAAAAGCTCTAATGGAAGAGGCGT
TGAAGGGCAGGCGGGAAGGAGACAGGGCTCGGCAAGACGTCGCGCGTGAG
CTGGAGGAGCAGGCCCTCGACGGAGCGGGGTTGCGGCAGCTGCTGGTCCT
TAAGAACCGGGAGTTGAGGAACGTTCGGAAGCTGAGCCATCCCTTTTTGC
GTCTGTCTATGCACACAACAAAACAGGTGGAAACCTTCTTTTTGGAGGCT
CTGCAAGAAGTGAGACAACGCATCGTCAACGGCCGCCAGGCGCAGTACCG
GAGGGCTGTGGTGGAGTACAACATGCGTGTGCGTGAGGCCAGCAGGAACA
GGACGAAATTCCCCAAGATAAGAGATATTTCGGCGTTGGACCCAGGCGCG
CCATCGTCTCTGCCGACGGACCCAGACACCAAGGTCGACATCTCCGCGCT
CAAGTGGGAAGACAAGGAGCGGGTCTTGCGTATCTTGTTCGCCAAGATCA
ATAATGCCCAGGGATACGTGGACGCTACCCCGGAACACCCCCTCGAAGCA
GCTAGCGCCGCGGCCTTCGCTGCCGCCACAGCTGGAGGCGGCGCCAGTCT
AGACCACGACCACGATAGCAACGGAGAAAATTCCCGACATGTACCACCTG
GTAATAGTCGGACTTTCGTAACCCAAGAAAACACGGCGGCAGTAAAAGCA
GCAGCTAGTCGATCGAGTCTCGAGGAGCTCTCAGAGCGCGATATTGGGGG
CAGCGGCGGCGGCAGAGGGGGGGGTGATGATGGATCGGGGTCGGTGTTGG
CGCCCGGGGGAGGGAATAGTACCAGTACGTCATTGTCGCCGCGATGTGAA
TCTCAGGCTTCGCTGCTTTCGGGGGTCTCACACCAGCCGCAGGCCCCTCT
AATATGA
back to top