mRNA_P-littoralis_Contig151.76.12 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig151.76.12
Unique NamemRNA_P-littoralis_Contig151.76.12
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig151.76.12 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig151contigP-littoralis_Contig151:480936..481544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size295
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789720.5663207-CDS-P-littoralis_Contig151:480936..4810421680789720.5663207-CDS-P-littoralis_Contig151:480936..481042Pylaiella littoralis U1_48CDSP-littoralis_Contig151 480937..481042 -
1680789720.57718-CDS-P-littoralis_Contig151:481356..4815441680789720.57718-CDS-P-littoralis_Contig151:481356..481544Pylaiella littoralis U1_48CDSP-littoralis_Contig151 481357..481544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig151.76.12prot_P-littoralis_Contig151.76.12Pylaiella littoralis U1_48polypeptideP-littoralis_Contig151 480937..481544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig151.76.12

>prot_P-littoralis_Contig151.76.12 ID=prot_P-littoralis_Contig151.76.12|Name=mRNA_P-littoralis_Contig151.76.12|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
ARTTTADSTPTTETELSATRFMWEGRSRPFRTRPQRGTLPRTQSSTPCVK
MGTRIPADAIKERVSTRAFQTIAHTPVTSGLAAMLCCGADAKVADRKR
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mRNA from alignment at P-littoralis_Contig151:480936..481544-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig151.76.12 ID=mRNA_P-littoralis_Contig151.76.12|Name=mRNA_P-littoralis_Contig151.76.12|organism=Pylaiella littoralis U1_48|type=mRNA|length=609bp|location=Sequence derived from alignment at P-littoralis_Contig151:480936..481544- (Pylaiella littoralis U1_48)
GCACGGACAACAACAGCAGACTCAACACCGACAACGGAGACGGAACTCTC
GGCGACGAGGTTTATGTGGGAAGGACGTTCGAGACCTTTCCGGACACGGC
CTCAACGTGGGACATTGCCACGAACACAGTCATCAACGCCTTGCGTGAAG
ATGGGCACGAGAATACCTGCAGACGCAATAAAAGAACGGTGTGTAGCGAA
CAATCACCATAGACGCCGAGTCTTATACTTGATACCACAGGTGTAGTAAT
GATTTGACGAAGAATGACTAAACGATACCCACGAAAAAGTGTACTAGTAT
ACTATCTACTGTAGAAAAATACGAGTGTCGCAGTTTCAAGACGGTCGACA
TCCTACGGGCGATACTTTCCTTCGTTGTTTATTTTTAAAAAAATGCTGTC
TCGCGGTTCCCTCTACTCGCCTTCTCTCGCAAAGTATTCAACGCTCAACA
AGCATCGCGAAAACCAGGCTGTGAAAATCGTTGGTATTGCGTCCATATCC
AGTGTAAGTACGCGGGCGTTCCAGACCATCGCACACACCCCCGTAACATC
AGGGCTGGCGGCGATGCTCTGTTGTGGAGCAGACGCAAAGGTTGCGGATC
GCAAAAGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig151:480936..481544-

>mRNA_P-littoralis_Contig151.76.12 ID=mRNA_P-littoralis_Contig151.76.12|Name=mRNA_P-littoralis_Contig151.76.12|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig151:480936..481544- (Pylaiella littoralis U1_48)
GCACGGACAACAACAGCAGACTCAACACCGACAACGGAGACGGAACTCTC
GGCGACGAGGTTTATGTGGGAAGGACGTTCGAGACCTTTCCGGACACGGC
CTCAACGTGGGACATTGCCACGAACACAGTCATCAACGCCTTGCGTGAAG
ATGGGCACGAGAATACCTGCAGACGCAATAAAAGAACGTGTAAGTACGCG
GGCGTTCCAGACCATCGCACACACCCCCGTAACATCAGGGCTGGCGGCGA
TGCTCTGTTGTGGAGCAGACGCAAAGGTTGCGGATCGCAAAAGG
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