mRNA_P-littoralis_Contig151.57.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig151.57.1
Unique NamemRNA_P-littoralis_Contig151.57.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig151.57.1 vs. uniprot
Match: B5LWL7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWL7_9PHYC)

HSP 1 Score: 374 bits (959), Expect = 5.870e-106
Identity = 244/711 (34.32%), Postives = 376/711 (52.88%), Query Frame = 1 
Query:    1 DRADEVIRENADKHLERFTYIFEQVLWWKSVTYKRFLYHVISIRREMNPGSQLDTWVRLQTLALEYIGDSASFGELMDAVFSEGTGIYADLDDSFSRRASRVESGVIDADSLLEHDQKRTLKVDARDTRIGPEASRGVVPT----SIGAIKKLHQDYGSRLLKELRVVILTTFPEYEAASLRCQSEGRQTCIVWLYEMRRVLGEAFLFEDWKDRHFDLEARRKDFQAEFDASVEAA--GGSMLSLARAGYIQYMYDSARAFLLARVKSFFCDVRIILPAIKPVLARLHEDYVGDIPLRIQRGVDDKIARERQLARLAVNSTLNRFMSNMEVSFVTDLVNAVTSSVVGGVVSKVEEIYNGFSDLPVAFVREALNPFDFAWFQTQPEQFITGNKIRHFDMREHVIDENNGHATTVLHSKRAQLTQQIYALFETVGAFATGVTSDLAAVIDATR-LQSDASVALLRATLDSVTESTASFTGTVQKSTLTEMEAALGGAMAQLEDVQGVRMQKCFDTKMQLIKDDLDTAATDRMAQAYQKHMDGIEANILRISGSARGTYRQHVDEILEIEITHRLHAEEVADPVLAQATDAILADNNIISFSARQSAVVLGRKNTIASAALEVTTQRSIAVLRFQRKWANSRSAFRDGFMSVADDSKAAFREYIIGVTQWQKSPAVDIMGHVDVVIDALERELFDAMEEANSNIVDTVIGTEDN 2112
            D+   VI   +D  + + T +FE V  W+   + RFL HV  IR E+N  S L+TW+R +T  + ++ +S   G  +   F     + +++  S S R        +  D ++   QKR L   A + + G E+           ++  +   ++ Y SRL  ELRV+      EY A   R +SEGR TCIV  YEMRR    AFLFE  KDR FDL+  +KD  A  + +V A    G +L+L   G+++Y+Y+ A AFL  R   FF D  I+L A+   LA+ H+     +P RI  G+  ++A E+      +   +  F+S ME S   +L+    SSV+  VV K+ EI N    LP  F+ EA+ PF F  F++  +QF  G+ I +  M+ HVI E N +A+ +L   R    ++I  + + V A+   ++ DL A++ A+  L+ ++   L+    D V     S+T T   S + ++E  L     +LE VQ  R+Q  F+TK+Q+IKD   +    ++  AY  H+D +EA++  +S SAR  +R+  DE L IEI++R    EVA PVL   T  ILAD NI+SFS R   VV   K+ + SAAL+V  +R+  +L ++RK+  +R+ F +  ++  +D K  FRE +    +  K     IMGH+  + D LER LFD + +A++N+VD  + T  N
Sbjct:  137 DKLFTVIISASDSRITKLTRLFENVKEWQLEAFVRFLRHVSRIRAELNVNSNLETWIRQETQTI-FVSNSFKLGGPISDHFETRLSLVSNILVSQSSRNLVARVSAVQNDPVIGATQKRRLTAFAHERKAGVESQDDTAVLDRDYTLAELATYYEPYSSRLANELRVITEVISLEYSAIQFRAESEGRLTCIVQFYEMRRTTDYAFLFEFCKDRDFDLDIFKKDVYALLEDTVTAPEISGQILALTDLGHLKYLYEEAGAFLRGRAYLFFQDDDIVLAAMLEHLAKTHDTVSSVVPDRIMYGISGELAEEQSTTLHFLRQRVEAFVSIMEYSKFVELIKGSRSSVIDAVVKKISEISNELKGLPAEFISEAIAPFTFERFESSSQQFELGDDIDYPGMKAHVISETNSYASQILVDTRDDYVEKIRTVSDLVTAYINSISLDLKALMKASEFLEPESKDELIAMVEDVVDGYMLSWTKTEMDSLVNDLETYLFYGFTELEVVQDQRLQNFFNTKIQVIKDSFRSETVGKLQSAYVAHVDAVEASLKGLSRSARVLFRELFDEFLSIEISYRSKIAEVAGPVLQDMTVQILADYNIVSFSNRAPLVVNEMKSAVNSAALDVLVERNREILAYRRKYDAARTDFTELILNTGNDLKLGFRETLRQELKNAKERGTQIMGHLLELFDLLERTLFDMLADASTNLVDEFVNTPTN 846
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BLAST of mRNA_P-littoralis_Contig151.57.1 vs. uniprot
Match: Q6XLW8_9PHYC (FirrV-1-D1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLW8_9PHYC)

HSP 1 Score: 140 bits (354), Expect = 4.560e-30
Identity = 90/273 (32.97%), Postives = 133/273 (48.72%), Query Frame = 3 
Query: 2118 LLEALDVVSVVFAPGVMYLN-----DSPVLPYTTFLRDTEEDDLDTLRAENGDALPSVDAPTGLSTLDIDTALMPWDD*LQSKIDEIVQQIVVTMQGGLKQNTCRNNKPPCGEGWVQFTNNTWELECCRFDPALQGFPAW*VTTIPAREILIALVLDLGTMIEVGSKVVM--KIGATRGGKTLTKGLVKWRKSMVKDMQRYAGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXVKVGGKVMSKAGAKLASMGTKLMTKLSMEPLGIALMVFDII 2915
            L E+L + S+  APG +        D+ VLPY  F                G      D P+GL+T  I+T L+ WD    +K ++I+Q+I+ +M   L QNTCR+NKPPC +GW+Q   N W ++CC F+P  QG P   +  +  +EI +A+ LDL  +     KV+   ++ AT+  K         +K++VK  Q+Y GKS                             + GK   K   K A+ G K++TKLS+ P GIALM+FD +
Sbjct:  882 LPESLSLESMTVAPGQLIHETLGDKDAVVLPYEAF----------------GSGEVETDQPSGLTTEAINTLLLDWDTWFSNKTNDIIQEIIDSMTEDLTQNTCRDNKPPCRDGWIQ-DKNLWGVDCCVFNPEAQGRPPAEIAFLLGKEIALAMFLDLENIAGAAGKVIQVAEMAATKAKKV-------GQKTLVKCFQKYGGKSPTRMTKAIGLARKFGAQKAAKMGKRVGASIVGKAAKKVAVKGAATGAKMLTKLSLGPAGIALMIFDTV 1130
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig151.57.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B5LWL7_9PHYC5.870e-10634.32Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XLW8_9PHYC4.560e-3032.97FirrV-1-D1 n=1 Tax=Feldmannia irregularis virus a ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig151contigP-littoralis_Contig151:310315..313462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3070
Hectar predicted targeting categoryother localisation
Exons3
Cds size2004
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789723.7631373-UTR-P-littoralis_Contig151:310314..3112421680789723.7631373-UTR-P-littoralis_Contig151:310314..311242Pylaiella littoralis U1_48UTRP-littoralis_Contig151 310315..311242 -
1680789723.8036373-UTR-P-littoralis_Contig151:313324..3134621680789723.8036373-UTR-P-littoralis_Contig151:313324..313462Pylaiella littoralis U1_48UTRP-littoralis_Contig151 313325..313462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789723.772513-CDS-P-littoralis_Contig151:311242..3130721680789723.772513-CDS-P-littoralis_Contig151:311242..313072Pylaiella littoralis U1_48CDSP-littoralis_Contig151 311243..313072 -
1680789723.78441-CDS-P-littoralis_Contig151:313120..3132381680789723.78441-CDS-P-littoralis_Contig151:313120..313238Pylaiella littoralis U1_48CDSP-littoralis_Contig151 313121..313238 -
1680789723.7940986-CDS-P-littoralis_Contig151:313268..3133241680789723.7940986-CDS-P-littoralis_Contig151:313268..313324Pylaiella littoralis U1_48CDSP-littoralis_Contig151 313269..313324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig151.57.1prot_P-littoralis_Contig151.57.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig151 311243..313324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig151.57.1

>prot_P-littoralis_Contig151.57.1 ID=prot_P-littoralis_Contig151.57.1|Name=mRNA_P-littoralis_Contig151.57.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=668bp
MNPGSQLDTWVRLQTLALEYIGDSASFGELMDAVFSEGTGIYADLDDSFS
RRASRVESGVIDADSLLEHDQKRTLKVDARDTRIGPEASRGVVPTSIGAI
KKLHQDYGSRLLKELRVVILTTFPEYEAASLRCQSEGRQTCIVWLYEMRR
VLGEAFLFEDWKDRHFDLEARRKDFQAEFDASVEAAGGSMLSLARAGYIQ
YMYDSARAFLLARVKSFFCDVRIILPAIKPVLARLHEDYVGDIPLRIQRG
VDDKIARERQLARLAVNSTLNRFMSNMEVSFVTDLVNAVTSSVVGGVVSK
VEEIYNGFSDLPVAFVREALNPFDFAWFQTQPEQFITGNKIRHFDMREHV
IDENNGHATTVLHSKRAQLTQQIYALFETVGAFATGVTSDLAAVIDATRL
QSDASVALLRATLDSVTESTASFTGTVQKSTLTEMEAALGGAMAQLEDVQ
GVRMQKCFDTKMQLIKDDLDTAATDRMAQAYQKHMDGIEANILRISGSAR
GTYRQHVDEILEIEITHRLHAEEVADPVLAQATDAILADNNIISFSARQS
AVVLGRKNTIASAALEVTTQRSIAVLRFQRKWANSRSAFRDGFMSVADDS
KAAFREYIIGVTQWQKSPAVDIMGHVDVVIDALERELFDAMEEANSNIVD
TVIGTEDNDHSLRRLTL*
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mRNA from alignment at P-littoralis_Contig151:310315..313462-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig151.57.1 ID=mRNA_P-littoralis_Contig151.57.1|Name=mRNA_P-littoralis_Contig151.57.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3148bp|location=Sequence derived from alignment at P-littoralis_Contig151:310315..313462- (Pylaiella littoralis U1_48)
GACAGGGCGGACGAGGTCATCAGGGAAAACGCCGACAAACACCTGGAGCG
CTTCACGTACATATTCGAGCAGGTCCTGTGGTGGAAATCAGTGACGTACA
AGCGCTTCCTCTACCACGTCATCAGCATAAGGCGTGAGATGAACCCCGGG
TCGCAGCTCGACACGTGGGTCAGGTTGCAGACACTTGCTCTGGAGTAAAA
CCTTCAGTCGCAGTTTATGGAGAGATACATCGGGGACTCAGCGTCTTTTG
GAGAGCTCATGGATGCCGTATTCTCGGAAGGCACCGGCATTTACGCCGAC
CTGGACGACTCTTTCTCGAGGAGGGCATCTCGTGTCGAAAGCGTACTAGC
ATCCATCGCAGCACAGTAGGGTGTAACGGAATACGCAGAGGGTGTAATAG
ATGCCGATTCATTGCTGGAACATGACCAGAAGAGGACTCTCAAGGTGGAT
GCAAGGGATACTCGTATAGGGCCCGAAGCATCCAGGGGGGTTGTTCCCAC
CAGCATCGGGGCGATAAAAAAACTACACCAGGACTACGGCAGCAGGCTGC
TGAAGGAGCTCAGAGTTGTGATTCTTACCACGTTTCCGGAGTACGAGGCA
GCATCCCTTCGGTGTCAGTCTGAGGGGAGGCAGACGTGCATTGTTTGGCT
CTACGAGATGCGGAGGGTCTTGGGCGAAGCCTTTCTCTTCGAGGACTGGA
AGGACAGGCACTTTGACCTGGAGGCGAGGCGAAAGGACTTCCAAGCCGAG
TTCGACGCCTCCGTAGAAGCCGCAGGAGGGTCGATGCTATCGCTCGCGCG
CGCCGGATACATTCAGTACATGTACGACAGTGCCAGGGCGTTCCTGCTTG
CCAGGGTGAAATCGTTTTTCTGCGACGTCAGAATAATCCTCCCCGCCATC
AAGCCCGTGCTCGCCAGGCTCCACGAGGACTACGTCGGCGATATTCCTCT
GCGGATCCAGCGAGGTGTCGACGATAAAATTGCGCGCGAGAGGCAGCTGG
CGCGCCTCGCCGTCAACTCCACCCTCAACAGATTCATGAGCAATATGGAG
GTCTCTTTCGTGACCGATCTGGTGAACGCCGTGACCAGCAGTGTCGTGGG
GGGCGTTGTGTCGAAGGTCGAAGAGATTTACAACGGCTTCTCGGACCTTC
CGGTCGCATTTGTAAGGGAGGCGCTGAACCCGTTCGATTTCGCGTGGTTT
CAGACCCAGCCCGAGCAGTTCATCACCGGCAACAAGATCAGGCATTTTGA
CATGAGGGAGCACGTGATAGACGAAAACAACGGGCACGCAACCACCGTGC
TGCACAGCAAGAGGGCGCAGCTGACGCAACAGATTTACGCTCTCTTCGAG
ACGGTAGGCGCCTTCGCGACCGGCGTTACGAGTGATCTGGCAGCCGTCAT
CGACGCGACACGCCTACAGAGCGACGCGTCCGTTGCGCTCCTGCGGGCGA
CGCTCGACAGCGTCACCGAGAGCACGGCTTCATTTACTGGCACTGTGCAG
AAGTCAACTCTAACCGAGATGGAAGCAGCGCTGGGGGGTGCCATGGCACA
GCTCGAGGACGTTCAGGGCGTGAGGATGCAAAAATGTTTCGACACAAAGA
TGCAGCTGATTAAGGACGATTTAGATACCGCCGCCACGGACAGAATGGCG
CAGGCGTACCAGAAGCACATGGACGGCATCGAAGCGAACATTCTGCGCAT
CTCGGGCAGTGCGAGGGGGACGTACAGGCAGCACGTTGACGAAATACTGG
AGATCGAGATAACGCACCGCCTTCACGCCGAGGAGGTGGCCGACCCGGTG
CTGGCGCAAGCGACCGACGCAATACTGGCGGACAACAACATCATTTCGTT
CTCGGCGCGACAGTCCGCCGTGGTTCTCGGCAGGAAAAACACTATCGCTT
CGGCAGCTCTGGAGGTGACAACGCAGCGCAGCATCGCGGTTCTTCGGTTC
CAGCGGAAGTGGGCTAACTCGCGGTCCGCCTTCAGGGATGGCTTCATGTC
GGTGGCGGACGACTCCAAGGCGGCGTTCCGCGAGTATATCATCGGCGTTA
CCCAGTGGCAAAAGTCTCCGGCGGTTGACATCATGGGGCACGTCGATGTC
GTCATCGACGCGCTGGAGCGAGAGCTGTTCGACGCCATGGAGGAGGCGAA
TTCCAATATCGTAGACACAGTGATAGGTACCGAGGATAACGACCACTCCT
TGAGGCGCTTGACGTTGTGAGCGTCGTGTTTGCGCCGGGTGTGATGTACC
TCAATGACAGTCCCGTGCTGCCATATACCACTTTCTTGCGAGACACGGAA
GAGGACGACCTGGACACCCTGCGCGCAGAAAACGGCGACGCACTACCGTC
AGTAGACGCGCCCACGGGGTTGTCCACGCTCGATATTGACACGGCTCTCA
TGCCGTGGGACGACTAGCTGCAGAGCAAGATTGACGAGATTGTTCAACAA
ATAGTTGTCACGATGCAGGGCGGCCTGAAGCAAAACACGTGCCGCAACAA
CAAGCCCCCTTGCGGAGAAGGCTGGGTGCAATTCACCAACAACACGTGGG
AGCTCGAGTGCTGTCGCTTCGACCCGGCATTGCAGGGCTTTCCGGCGTGG
TAGGTGACGACGATACCGGCGAGAGAAATTCTGATCGCGCTCGTGCTGGA
CCTAGGCACCATGATAGAGGTGGGTTCGAAGGTGGTGATGAAAATAGGGG
CGACACGAGGGGGTAAGACCCTGACAAAGGGGCTCGTAAAATGGAGAAAG
TCAATGGTCAAGGACATGCAAAGGTACGCGGGTAAATCGGGCAAGAGCAT
GACTAAAGGGCTCATGATGTGCAGCAGAATGGGCGGAAACCCGATGACTA
CAGCAGCGGGCAAGTCGGGCGTCAAGGTGGGAGGCAAGGTCATGTCGAAA
GCGGGCGCCAAGCTTGCATCTATGGGGACCAAGCTGATGACGAAGCTATC
GATGGAGCCCCTGGGCATTGCCCTCATGGTGTTCGACATAATATGTCGCT
GGTATGGGATCTGTGGGACTCTGCTGGGTACAACGATGCTCAGACGGCGG
GTCTGGTTCGGGCAGAGCGAGACGCCACCGAAGCGTACCACGCCGAGGTA
CTAGATAACGAAGAATTCGACGACCCGTTGCTGGCCGATCCCATGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig151:310315..313462-

>mRNA_P-littoralis_Contig151.57.1 ID=mRNA_P-littoralis_Contig151.57.1|Name=mRNA_P-littoralis_Contig151.57.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2004bp|location=Sequence derived from alignment at P-littoralis_Contig151:310315..313462- (Pylaiella littoralis U1_48)
ATGAACCCCGGGTCGCAGCTCGACACGTGGGTCAGGTTGCAGACACTTGC
TCTGGAATACATCGGGGACTCAGCGTCTTTTGGAGAGCTCATGGATGCCG
TATTCTCGGAAGGCACCGGCATTTACGCCGACCTGGACGACTCTTTCTCG
AGGAGGGCATCTCGTGTCGAAAGCGGTGTAATAGATGCCGATTCATTGCT
GGAACATGACCAGAAGAGGACTCTCAAGGTGGATGCAAGGGATACTCGTA
TAGGGCCCGAAGCATCCAGGGGGGTTGTTCCCACCAGCATCGGGGCGATA
AAAAAACTACACCAGGACTACGGCAGCAGGCTGCTGAAGGAGCTCAGAGT
TGTGATTCTTACCACGTTTCCGGAGTACGAGGCAGCATCCCTTCGGTGTC
AGTCTGAGGGGAGGCAGACGTGCATTGTTTGGCTCTACGAGATGCGGAGG
GTCTTGGGCGAAGCCTTTCTCTTCGAGGACTGGAAGGACAGGCACTTTGA
CCTGGAGGCGAGGCGAAAGGACTTCCAAGCCGAGTTCGACGCCTCCGTAG
AAGCCGCAGGAGGGTCGATGCTATCGCTCGCGCGCGCCGGATACATTCAG
TACATGTACGACAGTGCCAGGGCGTTCCTGCTTGCCAGGGTGAAATCGTT
TTTCTGCGACGTCAGAATAATCCTCCCCGCCATCAAGCCCGTGCTCGCCA
GGCTCCACGAGGACTACGTCGGCGATATTCCTCTGCGGATCCAGCGAGGT
GTCGACGATAAAATTGCGCGCGAGAGGCAGCTGGCGCGCCTCGCCGTCAA
CTCCACCCTCAACAGATTCATGAGCAATATGGAGGTCTCTTTCGTGACCG
ATCTGGTGAACGCCGTGACCAGCAGTGTCGTGGGGGGCGTTGTGTCGAAG
GTCGAAGAGATTTACAACGGCTTCTCGGACCTTCCGGTCGCATTTGTAAG
GGAGGCGCTGAACCCGTTCGATTTCGCGTGGTTTCAGACCCAGCCCGAGC
AGTTCATCACCGGCAACAAGATCAGGCATTTTGACATGAGGGAGCACGTG
ATAGACGAAAACAACGGGCACGCAACCACCGTGCTGCACAGCAAGAGGGC
GCAGCTGACGCAACAGATTTACGCTCTCTTCGAGACGGTAGGCGCCTTCG
CGACCGGCGTTACGAGTGATCTGGCAGCCGTCATCGACGCGACACGCCTA
CAGAGCGACGCGTCCGTTGCGCTCCTGCGGGCGACGCTCGACAGCGTCAC
CGAGAGCACGGCTTCATTTACTGGCACTGTGCAGAAGTCAACTCTAACCG
AGATGGAAGCAGCGCTGGGGGGTGCCATGGCACAGCTCGAGGACGTTCAG
GGCGTGAGGATGCAAAAATGTTTCGACACAAAGATGCAGCTGATTAAGGA
CGATTTAGATACCGCCGCCACGGACAGAATGGCGCAGGCGTACCAGAAGC
ACATGGACGGCATCGAAGCGAACATTCTGCGCATCTCGGGCAGTGCGAGG
GGGACGTACAGGCAGCACGTTGACGAAATACTGGAGATCGAGATAACGCA
CCGCCTTCACGCCGAGGAGGTGGCCGACCCGGTGCTGGCGCAAGCGACCG
ACGCAATACTGGCGGACAACAACATCATTTCGTTCTCGGCGCGACAGTCC
GCCGTGGTTCTCGGCAGGAAAAACACTATCGCTTCGGCAGCTCTGGAGGT
GACAACGCAGCGCAGCATCGCGGTTCTTCGGTTCCAGCGGAAGTGGGCTA
ACTCGCGGTCCGCCTTCAGGGATGGCTTCATGTCGGTGGCGGACGACTCC
AAGGCGGCGTTCCGCGAGTATATCATCGGCGTTACCCAGTGGCAAAAGTC
TCCGGCGGTTGACATCATGGGGCACGTCGATGTCGTCATCGACGCGCTGG
AGCGAGAGCTGTTCGACGCCATGGAGGAGGCGAATTCCAATATCGTAGAC
ACAGTGATAGGTACCGAGGATAACGACCACTCCTTGAGGCGCTTGACGTT
GTGA
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