mRNA_P-littoralis_Contig1508.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1508.5.1
Unique NamemRNA_P-littoralis_Contig1508.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1508.5.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 2.370e-34
Identity = 66/94 (70.21%), Postives = 77/94 (81.91%), Query Frame = 1 
Query:   73 MVYPVRGITSLSALSEGNEEGGGGDYDTREAAGGSPAADEILAVQDEIRGVEAMIENVEKETKKVAKKIDDVEAAFAEGSGYLGITDPEALLKK 354
            M YPVRG+T LSA+SEG+EE GGGD+  REAA   PAADEI AVQDEIRGVE  IE+ E+ET +V KKIDD+EAA A G+ YLG+TDPEALLK+
Sbjct:    1 MFYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQ 94
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BLAST of mRNA_P-littoralis_Contig1508.5.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.290e-30
Identity = 62/87 (71.26%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:   94 ITSLSALSEGNEEGGGGDYDTREAAGGSPAADEILAVQDEIRGVEAMIENVEKETKKVAKKIDDVEAAFAEGSGYLGITDPEALLKK 354
            +TSLSA+SEG+EE GGGD+D REAA   PAADEI AVQD+IRGVE   E+ EKET +V KKIDD+EAA A GS YLG+TDPEALLK+
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQ 87
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BLAST of mRNA_P-littoralis_Contig1508.5.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 5.340e-29
Identity = 65/96 (67.71%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:   73 MVYPVRGITSLSALSEGNEEGGGGDYDTREAAGGSPAADEILAVQDEIRGVEAMIENVEKETKKVAKKIDDVEAA-FAEGSGYLGITDPEALLKKE 357
            MVYPVRGITSLSALSEGNEE GGGD+DTREAAGGSPAADEI AVQ                      KIDDVEAA  A GSGYLG+TDPEALLK++
Sbjct:    1 MVYPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLKEK 96
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BLAST of mRNA_P-littoralis_Contig1508.5.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 6.780e-28
Identity = 65/118 (55.08%), Postives = 71/118 (60.17%), Query Frame = 1 
Query:    1 TSSLSQPSGATFLVFGTFGACGAHMVYPVRGITSLSALSEGNEEGGGGDYDTREAAGGSPAADEILAVQDEIRGVEAMIENVEKETKKVAKKIDDVEAAFAEGSGYLGITDPEALLKK 354
            T SLSQPSG    VFG    CGA   YPV G+TSLSA+SEG EE GGGD+  REAA GSPAADEI AVQ                        D +EAA A GS YLG+TDPEALLK+
Sbjct:   45 TFSLSQPSGPICPVFGACDTCGAQFFYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQ 162
[Close]
BLAST of mRNA_P-littoralis_Contig1508.5.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.090e-20
Identity = 54/94 (57.45%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:   94 ITSLSALSEGNEEGGGGDYDTREAAGGSPAADEILAVQDEIRGVEAMIEN-------VEKETKKVAKKIDDVEAAFAEGSGYLGITDPEALLKK 354
            +TS SA+SEG+EE GGGD+D REAA GSPAADEI AVQ                    E+ET +V KKID +EAA A GS YLG+TDPEALLK+
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQ 94
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1508.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LPP1_ECTSI2.370e-3470.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI3.290e-3071.26Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI5.340e-2967.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM56_ECTSI6.780e-2855.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI2.090e-2057.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1508contigP-littoralis_Contig1508:4713..5070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size359
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789720.3704724-CDS-P-littoralis_Contig1508:4712..50691680789720.3704724-CDS-P-littoralis_Contig1508:4712..5069Pylaiella littoralis U1_48CDSP-littoralis_Contig1508 4713..5069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1508.5.1prot_P-littoralis_Contig1508.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1508 4713..5069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1508.5.1

>prot_P-littoralis_Contig1508.5.1 ID=prot_P-littoralis_Contig1508.5.1|Name=mRNA_P-littoralis_Contig1508.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
TSSLSQPSGATFLVFGTFGACGAHMVYPVRGITSLSALSEGNEEGGGGDY
DTREAAGGSPAADEILAVQDEIRGVEAMIENVEKETKKVAKKIDDVEAAF
AEGSGYLGITDPEALLKKE
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mRNA from alignment at P-littoralis_Contig1508:4713..5070+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1508.5.1 ID=mRNA_P-littoralis_Contig1508.5.1|Name=mRNA_P-littoralis_Contig1508.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=358bp|location=Sequence derived from alignment at P-littoralis_Contig1508:4713..5070+ (Pylaiella littoralis U1_48)
ACGTCTTCGCTCTCGCAGCCCTCTGGTGCGACCTTCCTTGTGTTCGGGAC
GTTTGGCGCTTGTGGGGCGCACATGGTTTACCCAGTGCGAGGGATCACGA
GCTTGAGCGCGCTGAGCGAGGGCAATGAAGAGGGGGGCGGCGGCGATTAT
GATACGCGAGAAGCGGCAGGCGGCAGTCCGGCGGCGGACGAGATCCTTGC
GGTCCAGGATGAGATCCGTGGTGTCGAGGCCATGATCGAGAATGTCGAGA
AGGAGACTAAAAAGGTGGCCAAGAAGATCGATGATGTTGAGGCTGCTTTT
GCTGAGGGCTCCGGGTACCTCGGAATTACCGACCCCGAAGCCCTGTTAAA
GAAGGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1508:4713..5070+

>mRNA_P-littoralis_Contig1508.5.1 ID=mRNA_P-littoralis_Contig1508.5.1|Name=mRNA_P-littoralis_Contig1508.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig1508:4713..5070+ (Pylaiella littoralis U1_48)
ACGTCTTCGCTCTCGCAGCCCTCTGGTGCGACCTTCCTTGTGTTCGGGAC
GTTTGGCGCTTGTGGGGCGCACATGGTTTACCCAGTGCGAGGGATCACGA
GCTTGAGCGCGCTGAGCGAGGGCAATGAAGAGGGGGGCGGCGGCGATTAT
GATACGCGAGAAGCGGCAGGCGGCAGTCCGGCGGCGGACGAGATCCTTGC
GGTCCAGGATGAGATCCGTGGTGTCGAGGCCATGATCGAGAATGTCGAGA
AGGAGACTAAAAAGGTGGCCAAGAAGATCGATGATGTTGAGGCTGCTTTT
GCTGAGGGCTCCGGGTACCTCGGAATTACCGACCCCGAAGCCCTGTTAAA
GAAGGAG
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