mRNA_P-littoralis_Contig1506.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1506.1.1
Unique NamemRNA_P-littoralis_Contig1506.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1506.1.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 7.450e-52
Identity = 86/128 (67.19%), Postives = 98/128 (76.56%), Query Frame = 2
Query:  431 GPWTGLFVRTIRPTTRDTAEPNSYYSGHEKGFGMNFQGICDAEYRIIAWTMNSPGCQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPSSDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQPFGIMV 814
            G   GLFVR I P  +  A P S+YSGH+K FGMNFQGIC+A Y II WTMN PG QNDRTAFK SGF+ LL  +PPD FI+GDAAYP+S+RVLVP PGT L    DA+NF+QSQ RISIEQ FGI+V
Sbjct:  186 GAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGILV 313          
BLAST of mRNA_P-littoralis_Contig1506.1.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 2.480e-51
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 2
Query:  431 GPWTGLFVRTIRPTTRDTAEPNSYYSGHEKGFGMNFQGICDAEYRIIAWTMNSPGCQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPSSDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQPFGIMV 814
            G   GLFVR  +P+ R    P S+YSGH+KGFGMNFQG+C+A Y IIAWTMN PG  NDRTAFK S F  +L+ LPP  +I+GDAAYP+SD+VLVPYPGT+L    DA+NF+QSQ RISIEQ FGIMV
Sbjct:  182 GAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGIMV 309          
BLAST of mRNA_P-littoralis_Contig1506.1.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 6.720e-51
Identity = 80/141 (56.74%), Postives = 107/141 (75.89%), Query Frame = 2
Query:  392 RNAAQSVLSGNASGPWTGLFVRTIRPTTRDTAEPNSYYSGHEKGFGMNFQGICDAEYRIIAWTMNSPGCQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPSSDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQPFGIMV 814
            RN +   +     G   GLFVR I+P+ ++ AEPN YY+GH+KGFGMNFQ +CDA+YRI+AW MN PG QNDRTAF FSGF++LL  LP  +F++GDAAY +S+RV+VP+PGT+L    DA N++ SQ R++IEQ +GI+V
Sbjct:  162 RNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 302          
BLAST of mRNA_P-littoralis_Contig1506.1.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 8.090e-51
Identity = 80/148 (54.05%), Postives = 108/148 (72.97%), Query Frame = 2
Query:  371 PTTPLTSRNAAQSVLSGNASGPWTGLFVRTIRPTTRDTAEPNSYYSGHEKGFGMNFQGICDAEYRIIAWTMNSPGCQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPSSDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQPFGIMV 814
            P  P  S  AA   +     G   GLFVR I+P+ ++ AEPN YY+GH+ GFGMNFQ +CDA+YRI+AWTM+ PG QNDRTAF F+ F++LL  LP  +F++GDAAY +S+RV+VP+PGT+L    DA N++ SQ R++IEQ +GI+V
Sbjct:    3 PEPPSFSATAALVDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGILV 150          
BLAST of mRNA_P-littoralis_Contig1506.1.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 1.150e-50
Identity = 88/148 (59.46%), Postives = 107/148 (72.30%), Query Frame = 1
Query:    1 KHRSTLLLRERRAWPLYIKPMLGDGTFKGRFRMHHVDFTILVDHLRPELERDTSMGALRNGAVPVEYQVGLTLRWLAGASMYEGMDGHVIARSTAYQTAFRVIKAINDCTELDCKWPATPEDVADNAAHFEKRCSVGVIRKCVGAMDG 444
            ++RSTL+ RERR +  YIKPML D TF  RFRM + DF +LVDHLRP L+++   G LRNGA+PVEYQV +TLRWLAG S+YE MDGHVIARSTAY     VI A+N C EL+CKWP   ED+ +  +       + V+RKCVGAMDG
Sbjct:   44 RNRSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDLPEPPSFSATAALMDVVRKCVGAMDG 190          
BLAST of mRNA_P-littoralis_Contig1506.1.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 2.020e-47
Identity = 77/128 (60.16%), Postives = 93/128 (72.66%), Query Frame = 2
Query:  431 GPWTGLFVRTIRPTTRDTAEPNSYYSGHEKGFGMNFQGICDAEYRIIAWTMNSPGCQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPSSDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQPFGIMV 814
            G   GLFV    P+ R    P  +YSGH+KGFGMNFQ +C+A Y+I AWTMN PG  NDRTAFK SGFE++L+ LP   +I+GD AYP+SD+VLVPYPGT L    D++NF+QSQ RI IEQ FG MV
Sbjct:  116 GAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFGNMV 243          
BLAST of mRNA_P-littoralis_Contig1506.1.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 3.680e-47
Identity = 83/148 (56.08%), Postives = 101/148 (68.24%), Query Frame = 1
Query:    1 KHRSTLLLRERRAWPLYIKPMLGDGTFKGRFRMHHVDFTILVDHLRPELERDTSMGALRNGAVPVEYQVGLTLRWLAGASMYEGMDGHVIARSTAYQTAFRVIKAINDCTELDCKWPATPEDVADNAAHFEKRCSVGVIRKCVGAMDG 444
            ++RSTL+ RERR +  +IKP+L D TF  RFRM + DF +L+DHLRP L ++  MG LR GA+PVEYQ+ +TLRWLAG S+YE MDGHVIARSTAY     VI A+N C EL+CKWP    DV               +RKCVGAMDG
Sbjct:   44 RNRSTLVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMDV---------------VRKCVGAMDG 176          
BLAST of mRNA_P-littoralis_Contig1506.1.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.730e-34
Identity = 73/137 (53.28%), Postives = 91/137 (66.42%), Query Frame = 1
Query:    1 KHRSTLLLRERRAWPLYIKPMLGDGTFKGRFRMHHVDFTILVDHLRPELERDTSMGALRNGAVPVEYQVGLTLRWLAGASMYEGMDGHVIARSTAYQTA----FRVIKAINDCTELDCKWPATPED-VADNAAHFEK 396
            + RSTL+ R RR +  YIKPML D TF  RFRM + DF +LVDHLRP L+++  MG LRNGA+PVEYQV +TLRWLAG S YE MDGHVIARSTAY       +R++  + +C       P +  D  A N + F+K
Sbjct:   44 RSRSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAYHAVCDAQYRIMAWMMNC-------PGSQNDRTAFNFSGFDK 173          
BLAST of mRNA_P-littoralis_Contig1506.1.1 vs. uniprot
Match: A0A6H5JV75_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV75_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 3.970e-34
Identity = 63/124 (50.81%), Postives = 83/124 (66.94%), Query Frame = 2
Query:  443 GLFVRTIRPTTRDTAEPNSYYSGHEKGFGMNFQGICDAEYRIIAWTMNSPGCQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPSSDRVLVPYPGTNLPTFHDAFNFWQSQGRISIEQPFGIMV 814
            GLFV+T+ PT  +T    SYYSG + G+G+N Q  CDA YR  + +  +PG  ND TA+  S     +++LPP +++LGDAAYP SD +L PYPG  LP   DAFNF+ SQ R+ IEQ FGI+V
Sbjct:  214 GLFVKTLAPTALNTPNVLSYYSGSKCGYGVNVQATCDANYRFCSMSCIAPGSTNDWTAWNHSDLSTAVKNLPPGFYMLGDAAYPLSDHLLTPYPGRGLPLDKDAFNFYLSQLRVRIEQAFGILV 337          
BLAST of mRNA_P-littoralis_Contig1506.1.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 8.880e-34
Identity = 67/127 (52.76%), Postives = 82/127 (64.57%), Query Frame = 1
Query:  163 MGALRNGAVPVEYQVGLTLRWLAGASMYEGMDGHVIARSTAYQTAFRVIKAINDCTELDCKWPATPEDVADNAAHFEKRCSVGVIRKCVGAMDGSLCPHHQTDHQRYSRTEQLLQRSREGIWHELSG 543
            MG LRNGA+PVEYQV +TLRWLAG S+YE MDGHVIARSTAY     VI A+N C EL+CKWP   ED A  A  F  R S G   +  G+    +CP  Q + +   R + +LQR++E + HEL G
Sbjct:    1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEG-EDAAGAAELFRNRSSYGCRPEVRGSHGWLVCPDDQAEREGGRRAQLMLQRAQERLRHELPG 126          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1506.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6M2_9PHAE7.450e-5267.19DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE2.480e-5165.63DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE6.720e-5156.74DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE8.090e-5154.05DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE1.150e-5059.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCG0_9PHAE2.020e-4760.16DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE3.680e-4756.08DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE2.730e-3453.28DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JV75_9PHAE3.970e-3450.81DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5J9B3_9PHAE8.880e-3452.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1506contigP-littoralis_Contig1506:11723..12979 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0SGV3
PFAMsDDE_Tnp_4
Model size850
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons2
Evalue1.42e-21
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota
Descriptionnuclease activity
Cds size588
COG categoryB
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789719.9279745-CDS-P-littoralis_Contig1506:11722..120311680789719.9279745-CDS-P-littoralis_Contig1506:11722..12031Pylaiella littoralis U1_48CDSP-littoralis_Contig1506 11723..12031 -
1680789719.9408257-CDS-P-littoralis_Contig1506:12438..127171680789719.9408257-CDS-P-littoralis_Contig1506:12438..12717Pylaiella littoralis U1_48CDSP-littoralis_Contig1506 12439..12717 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789719.9545856-UTR-P-littoralis_Contig1506:12717..129791680789719.9545856-UTR-P-littoralis_Contig1506:12717..12979Pylaiella littoralis U1_48UTRP-littoralis_Contig1506 12718..12979 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1506.1.1prot_P-littoralis_Contig1506.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1506 11723..12717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1506.1.1

>prot_P-littoralis_Contig1506.1.1 ID=prot_P-littoralis_Contig1506.1.1|Name=mRNA_P-littoralis_Contig1506.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp
MSSLGVPHTRQRFALSRPSTTVLSWTASGPPRRRTSPTTPLTSRNAAQSV
LSGNASGPWTGLFVRTIRPTTRDTAEPNSYYSGHEKGFGMNFQGICDAEY
RIIAWTMNSPGCQNDRTAFKFSGFEQLLQDLPPDYFILGDAAYPSSDRVL
VPYPGTNLPTFHDAFNFWQSQGRISIEQPFGIMVSAQRFSCWTSK*
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mRNA from alignment at P-littoralis_Contig1506:11723..12979-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1506.1.1 ID=mRNA_P-littoralis_Contig1506.1.1|Name=mRNA_P-littoralis_Contig1506.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1257bp|location=Sequence derived from alignment at P-littoralis_Contig1506:11723..12979- (Pylaiella littoralis U1_48)
AAGCACCGCAGCACCCTGTTGCTGCGAGAAAGGCGAGCGTGGCCTCTTTA CATCAAGCCCATGCTAGGAGACGGGACCTTCAAGGGGCGCTTCCGAATGC ACCATGTCGACTTCACGATCCTGGTTGATCATCTTCGGCCGGAGCTGGAG AGAGACACTTCGATGGGAGCCCTCCGGAACGGCGCCGTTCCGGTCGAGTA TCAGGTCGGTTTGACCCTGCGCTGGTTGGCTGGTGCGTCCATGTACGAAG GCATGGACGGGCATGTCATCGCTAGGAGTACCGCATACCAGACAGCGTTT CGCGTTATCAAGGCCATCAACGACTGTACTGAGCTGGACTGCAAGTGGCC CGCCACGCCGGAGGACGTCGCCGACAACGCCGCTCACTTCGAGAAACGCT GCTCAGTCGGTGTTATCCGGAAATGCGTCGGGGCCATGGACGGGTCTCTT TGTCCGCACCATCAGACCGACCACCAGAGATACAGCCGAACCGAACAGCT ACTACAGCGGTCACGAGAAGGGATTTGGCATGAACTTTCAGGTACACACT ACGAAATCTGAAGTAGAAAGGCGTCTTCTGTTTTCGTGTACCCACCTCTC TCTCTCTCTCTCTACAAAAAATATGGCATTGATCTCATAAAAACATAGGG ATCCGTATTTGATGCTCTGGTGCACTCTGCAAGTACATCAGTACATTTAC GTATGCACTACTGCTGTAATGTGCATGACACACCTTAACAACTACAATTG CTGCAGCCCCTTCCGAATACGGACATGCCGCCTGACAAAAGAAAATATGC ATGTATGACAAAATTTGCAAATGCGGTGATGAGGCCATGTGGTAACCGCG GATGACTGAAGTGCACATCGATCCGCTGTCCTACTCGATGTGAGCATGTG TCCCCAAAACTGAACTGTTCGCGAACTCTTGCCCTCTCACCTATACAGGG GATCTGCGACGCGGAGTACAGGATCATCGCATGGACCATGAACAGTCCCG GGTGCCAAAATGACCGCACAGCCTTCAAGTTTTCCGGGTTCGAACAGCTC CTCCAGGACTTGCCCCCGGACTACTTCATCCTGGGCGACGCGGCGTACCC CTCTTCCGACCGCGTCCTGGTCCCGTACCCCGGGACAAACCTGCCAACGT TCCACGACGCCTTCAACTTCTGGCAGTCTCAGGGGCGGATCTCCATCGAG CAGCCCTTCGGCATAATGGTGAGTGCTCAACGCTTCAGCTGCTGGACTTC CAAATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1506:11723..12979-

>mRNA_P-littoralis_Contig1506.1.1 ID=mRNA_P-littoralis_Contig1506.1.1|Name=mRNA_P-littoralis_Contig1506.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig1506:11723..12979- (Pylaiella littoralis U1_48)
ATGTCATCGCTAGGAGTACCGCATACCAGACAGCGTTTCGCGTTATCAAG
GCCATCAACGACTGTACTGAGCTGGACTGCAAGTGGCCCGCCACGCCGGA
GGACGTCGCCGACAACGCCGCTCACTTCGAGAAACGCTGCTCAGTCGGTG
TTATCCGGAAATGCGTCGGGGCCATGGACGGGTCTCTTTGTCCGCACCAT
CAGACCGACCACCAGAGATACAGCCGAACCGAACAGCTACTACAGCGGTC
ACGAGAAGGGATTTGGCATGAACTTTCAGGGGATCTGCGACGCGGAGTAC
AGGATCATCGCATGGACCATGAACAGTCCCGGGTGCCAAAATGACCGCAC
AGCCTTCAAGTTTTCCGGGTTCGAACAGCTCCTCCAGGACTTGCCCCCGG
ACTACTTCATCCTGGGCGACGCGGCGTACCCCTCTTCCGACCGCGTCCTG
GTCCCGTACCCCGGGACAAACCTGCCAACGTTCCACGACGCCTTCAACTT
CTGGCAGTCTCAGGGGCGGATCTCCATCGAGCAGCCCTTCGGCATAATGG
TGAGTGCTCAACGCTTCAGCTGCTGGACTTCCAAATGA
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