mRNA_P-littoralis_Contig150.86.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig150.86.1
Unique NamemRNA_P-littoralis_Contig150.86.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig150.86.1 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.800e-16
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = 2 
Query:    2 GRGEESEEDNDCMSVQDSDDEEETDEAAVQYMHGA---FEDVPNAGKVNELA*NIANHIKDGLRGDTDRTVSVVLEGGDALFNGRLDWLGPLWAEVKGLPPTTHL 307
            GRG  ++E+++ + V+DSD+E   D  ++  +H     F D+ +    N+ A  +   +  GL GDT+R V+ V + GDALFNGRLDWLG LWA VKGL PT  L
Sbjct:   54 GRGWGADEEDNYVDVEDSDEEFHRDGESLSELHDRVREFGDIQDNTPANDAARGMRTLLVGGLHGDTNRVVAAVHKRGDALFNGRLDWLGELWAVVKGLQPTADL 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig150.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIR5_9PHAE6.800e-1643.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig150contigP-littoralis_Contig150:477340..477858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size308
Hectar predicted targeting categorymitochondrion
Exons2
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789716.3332222-CDS-P-littoralis_Contig150:477339..4775261680789716.3332222-CDS-P-littoralis_Contig150:477339..477526Pylaiella littoralis U1_48CDSP-littoralis_Contig150 477340..477526 -
1680789716.343017-CDS-P-littoralis_Contig150:477737..4777991680789716.343017-CDS-P-littoralis_Contig150:477737..477799Pylaiella littoralis U1_48CDSP-littoralis_Contig150 477738..477799 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789716.3538888-UTR-P-littoralis_Contig150:477799..4778581680789716.3538888-UTR-P-littoralis_Contig150:477799..477858Pylaiella littoralis U1_48UTRP-littoralis_Contig150 477800..477858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig150.86.1prot_P-littoralis_Contig150.86.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig150 477340..477799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig150.86.1

>prot_P-littoralis_Contig150.86.1 ID=prot_P-littoralis_Contig150.86.1|Name=mRNA_P-littoralis_Contig150.86.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=83bp
MRKRPTRRRSNTCMVLSRMFRMLARSTSWPRTLRTISRMVFAGTQIVPCR
WCLREGTPSSTGVSTGSVRFGRRSKVFLLQRT*
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mRNA from alignment at P-littoralis_Contig150:477340..477858-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig150.86.1 ID=mRNA_P-littoralis_Contig150.86.1|Name=mRNA_P-littoralis_Contig150.86.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=519bp|location=Sequence derived from alignment at P-littoralis_Contig150:477340..477858- (Pylaiella littoralis U1_48)
AGGTCGAGGAGAGGAGTCTGAAGAAGATAACGATTGCATGAGCGTGCAGG
ATTCGGACGATGAGGAAGAGACCGACGAGGCGGCGGTCCAATACATGCAT
GGTGCTTTCGAGGATGTTCCGGTGAGAATGGCAGTGCATATTGTTGCCTG
CTCGCACATTTCAGACATCATGCAGCCAATGTTTCCTTTTGGTGTGACCT
CGCATAGTCAGACTGGCACTTGTTGTTTCACTTGTGTTTCATCACCATCG
CAACGAGAGCCTGTTTGGGATGATATTTTCAATCGCTTTTATCTTTTGTT
TGTCCGCGGCCGTGTGGTTGACGATGAAGCAGAATGCTGGCAAGGTCAAC
GAGCTGGCCTAGAACATTGCGAACCATATCAAGGATGGTCTTCGCGGGGA
CACAGATCGTACCGTGTCGGTGGTGCTTGAGGGAGGGGACGCCCTCTTCA
ACGGGCGTCTCGACTGGCTCGGTCCGCTTTGGGCGGAGGTCAAAGGTCTT
CCTCCTACAACGCACTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig150:477340..477858-

>mRNA_P-littoralis_Contig150.86.1 ID=mRNA_P-littoralis_Contig150.86.1|Name=mRNA_P-littoralis_Contig150.86.1|organism=Pylaiella littoralis U1_48|type=CDS|length=249bp|location=Sequence derived from alignment at P-littoralis_Contig150:477340..477858- (Pylaiella littoralis U1_48)
ATGAGGAAGAGACCGACGAGGCGGCGGTCCAATACATGCATGGTGCTTTC
GAGGATGTTCCGAATGCTGGCAAGGTCAACGAGCTGGCCTAGAACATTGC
GAACCATATCAAGGATGGTCTTCGCGGGGACACAGATCGTACCGTGTCGG
TGGTGCTTGAGGGAGGGGACGCCCTCTTCAACGGGCGTCTCGACTGGCTC
GGTCCGCTTTGGGCGGAGGTCAAAGGTCTTCCTCCTACAACGCACTTGA
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