mRNA_P-littoralis_Contig150.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig150.7.1
Unique NamemRNA_P-littoralis_Contig150.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig150.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig150contigP-littoralis_Contig150:29956..36587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789716.1246123-UTR-P-littoralis_Contig150:29955..299751680789716.1246123-UTR-P-littoralis_Contig150:29955..29975Pylaiella littoralis U1_48UTRP-littoralis_Contig150 29956..29975 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789716.1356666-CDS-P-littoralis_Contig150:29975..300371680789716.1356666-CDS-P-littoralis_Contig150:29975..30037Pylaiella littoralis U1_48CDSP-littoralis_Contig150 29976..30037 -
1680789716.1468892-CDS-P-littoralis_Contig150:36505..365871680789716.1468892-CDS-P-littoralis_Contig150:36505..36587Pylaiella littoralis U1_48CDSP-littoralis_Contig150 36506..36587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig150.7.1prot_P-littoralis_Contig150.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig150 29976..36587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig150.7.1

>prot_P-littoralis_Contig150.7.1 ID=prot_P-littoralis_Contig150.7.1|Name=mRNA_P-littoralis_Contig150.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=48bp
CWRGGDSGTTGSEPTRNIRVCKSSVLREETKRGTPLLALGAVDCECR*
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mRNA from alignment at P-littoralis_Contig150:29956..36587-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig150.7.1 ID=mRNA_P-littoralis_Contig150.7.1|Name=mRNA_P-littoralis_Contig150.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6632bp|location=Sequence derived from alignment at P-littoralis_Contig150:29956..36587- (Pylaiella littoralis U1_48)
TGCTGGCGCGGCGGCGATTCAGGAACGACAGGGTCAGAGCCGACGCGCAA
CATCCGTGTATGTAAATCAAGCGTTCTACGAGGTGGGCGTTGGGGAGACC
CGCCAACCGTACTTCCGAGCTTCTAGACCTTTGGTGTTGTTAACCCTTCT
GGAACTTCTGAGGTGATAAATGCATGAAAAAAATGGATCATAATATATAC
CAGGTATTTTTTATATAAGCCAGTCTCTTTGGGACAGGGACAAAAACAAA
AAATTCAGCATTCCGGCTGAACTCAGATACGGGCAACAGGACAAACAAAC
ACCGCTAACAGCTGCTATGTGTGTGTGGTCAAGGGGTGTGAGGGTGCCCA
GCAAGACTCAAGTCAACGTAATGAATCCCCGGCATGTCGAAATCTGAAAT
CATCTCGTCTGACACAGTTTAATACTCTCTACACTTCGCAGTGTGTCATA
TTTTTCTGGGGTGCAACACCACACCATTAGGGTGGGGCCTACGTAAGTTT
TTTGGACTCGAACATCGAACAAGAGGCGTAATCATGTGATTGGCCGTGAA
AATAAAATAAAACAAAAGATGTTAAAGCGTTCGAGTTTGTTTACGCCTGA
TCTTCCAGGGGCGATTCCGCCTAAAACTCGAAAACCTAACATCGAACCTA
CAGTCCCGTGGGCTATTGACGAAAATGATTAATTGGTAACAAAAAAAGAA
GACCCGCGTCTATCGCTCCCTCTCAGGACAAGAGAGAGAGGGCGACCGGG
CGACCGAGAGAGAGACGACCGCAGAGCATAGCCGCAAAACAAGTGTCTAT
GCCGAGCGACAGCGAGGTTTCGACTGATCTCAGGGCCCCGCGTGCGCAAG
CGGGGCCAGGTGAAACGCAATCACACGGGCGTGGCTTCCTGTTGTAACCA
CACAGCAGCCGTAGCAGCAGCAGCAGCTGCGTACCGATATATATGACAGC
CCGGTCTATTGGGGAGCACTTGCGTGTGTGTGTGTGTGTGTGCCTGTGGG
ACTTTTTTACTCGCCTTTTCCGAAATTACAAAGGACCCAAAAAGTCGAAC
ATCGATCTATCTGCTTGTTCGATGTTCGATGTTCGAGTCCACAAAAATTA
CGTAGGCCCCGCCGTTATAGCAACACTCCTACCACAACTTCTGCTACTAC
TGCCGCTGCTGTACACCAGTACATCACATGCCATATGATACCTCCTCCCT
AGTTGGTATGACACAAGAAGCAAGAAGAGCATAAGTAGTAGTAGAAAGGT
AGAGTCATACCTCTAGGCTATGTATGATACATCATGGTATCTTATTTATT
CCTTCGAAGTATCTTGTTTTGTCAAAACCCAGCGAACAGCAGCAGCAGCA
TGTATGTAGATATGTAGATGCATGCGATTGGTTGCTAGAAGTCCACTGCG
GCTGCTGCTGCTGCTGCTGCTACCAGTACCAATGATGTGCCTTCTGTGTG
CGAGAAGGGAGGACCGGCCTTCAGGCTGGCCGCAGGCCACGGGGCCCCTG
AGCAAAAGCACGTTTACTAGGCCGGGGGCTACAGCGAGAAACGAGTAACT
CCTTAGCAGTAACTCTTTTTCCTTATTATCTTGTTTTGAGCGGACTGGAT
ACTTTAAGCGCTTTTGATGGGTAGAACGCGTTGCACGACGCCTAAGAGCT
AGCTGCGGCATCTCGACCACCGGGTATCCCTTGTACTCTCCAGGGACGTA
ACCAGCCCGCCGTGAGCCCCCGTCAGGGGCCCTGGCTGTATATCTTTGTG
GTGCGGTTGTGTACTTTTTCTCTTGGTTTCGTGACTGCTGTACATTTGAC
AGGGACATTCGAGCCATATTGTTTTTCTCGGGGGAACAGTGTATGGCTCT
GATTTGGAACCCGGGCTGTTCGTGTGAAGAGGAACAACACACCCTGGTCC
CAAAAGAGTTAACGCGCAGTTGTCGCTTTGCACTTGGCGTGCAGCCGAGA
ATTCGCGAGACAAAAAGTTACATGCAACGCCTGTTAAGGCTAGTCAGTGG
CCTAACGAATTGATTCGGGCCGTCCCATTTTTATATTTTCGGGCGACGCC
AACACCAAAACCGAGCTTGCCATGTGCCTTGACCCCTGTAACCCTCCTCG
GACTTCTGGTCCTTTTTGCGTATCACACAGATTGATCATTTCTTAGTTTT
GTTTTGGGCCGGTCCATTCGGGCTGGGGACGATCAAAACAACCTGAACGT
TCTACATAAAGTCGTTTTGCACGAGGATTGGTCTGGCAAGTTCCTTCACC
ACATAACTATGTACTCGAAGTATTATGCGACAGGCTCAGTGGCTCGCACA
CAGCAGCAGCAAAAATATTTCGTTCGTGGAATGCTGCAGTTGCTGTATAC
AATAAATGCTGTATTGTATCTTCTGTGACCCGCCTCGCACGCACACCGCC
ATCACACACTGAGCAGCAGTCCACCAAACAACTTACGTACAGTCGTAGTT
CGCACACAGCAGTTTGAGCTGTGTTGGTTGTCACAGCACAGCTCGAAGCA
GCGACCGACAAGTAGGAAAGGGGCTCGCAGGCCACTGTGTCCCTAGGACA
CGTAAAGTGTACGTTTGAAAGGGCGGGAGCTGTACTAGCTGGGCCGGGCA
AGACGCCCGGGTCTCACTACTATCGCCACGCGCCGCTCAATTTTTGGAGA
TAGGACCTGAAAATTTGACACGTTATTAAGACGTATCTCGCCAAAAAACG
TATTGTTGCACCTTGTATTTTTTTTTTTTTTTGGCCGACATACGACCAAC
CGAAAGTTTTACTGGATACACAAAATCGGCGAGTAAGTGGACAAAAAAAA
ACAGAAAATTAGAGGGTGCGGCAACACGTTTTTTTTCAGGTCCCAACTCC
AAACATTGAGCGGCACGTGGCCAAGTTTCCACCGAAGTGCCTCTGCGTAC
AAATTTACATTTATTTCAAGGATCTATCTATCCATAACTTTCGAACGAAA
ATGACCCATCGAAAGAAACGCTTATCTCCCTACTCCTTGTCCCAAGATGT
ACATGCCCAGAAAATTTAAGCCAATTCCAACCGTGTTGTACTTCGAGAAA
TTTTAGAAAAAAGCAACACAACAAATACTGAAAAAAATGCTCAAACTACG
ACACGTGAGTGTCAAACACTTTTTTCGGCACCAACTTCAGATTCTCAAGC
CGATGGGCTTAAAATGACCACCGTATCTAGCTGATTACAAGGATATGCTC
AGTTTGCAGTGGGTCACTTGTCGTTCAAAAGATATGCCCGACTGACGGAT
TATGGGATCTACTGATCATTTTTTACTCACTAATCCTGTTTCCTTTTGGT
TTCAGAGGGGTATGGGTTTGAGAGGCCTGTGCCGAACAGCCGTCATTCCG
CTATTTTTAGAGCTGTCGGCGGCATGGTGACCACTGGATAACCCTTGTAT
CCTCCCCAGGGACGCAACCCGCTCGTTCCGAGCCCGTGTTAGGTGCCCTG
GCTGTTTCGGTGGGCTGGAACGTACCTGGTACATTTTCTCTTGGTTTTAT
CTCGCTGTACATTTTTCTTTGTTCTCGGGGGAATATCGCCTGCTTGTGAT
TTGGAACCCGGGCTATTCGGATAGCCAGTCTGGACTTGCCTGTTCCCAGA
AGGGTGAACAAAGTCAGGTCACCCAAGTCTTCCCACAAGATTAGTCTTCC
TTTTCCCTCTTTCTCGTCCTTCTTGGCCCGCTTGTCATATAATTCGTTTG
CAGTTAAATCGCATTGTATCACGGTGCCCCAGATTTTGGCGAAGCTAAAT
CTTCGGTGACTTGTCACGTGTCCTCCTACACAAACCCCTGTTCCACGTAG
CATGACAGCGACAACGGTGTTTGCGTCATGGCTGATGAAGTTGTGACGAA
GATGGTGGGCCGACAATCATTTTTCAATTCTTTCAACTCCTAACCCGACC
GCGATGGAACCAGGCAATAACTACTCTCCCGCAATCACATCGTGGCCACC
GTCGTATCTACGTGCTCCGACCTCGGCCACCAATCCGCCCATGCCCGCCA
CAAGGGCATTGCGCATTCGAGGCGAGCGTCGTTGGCTGCCGCCGTTTGTA
TGTCGTTGCCAAGAAGCGATGCCACGCTCTTGGTTGTTGAAAAAAACGGG
GCAATTTGGAAACTAGTTCGGCAACCGCAAGGGCCGTGTACATGTAGTAG
TTATACAGCAGCACCCGTTGAGAGTTGTTTTTATGTACAAATACGTTAGT
TATTTTGAGCTTCCAGCTGCTTCACGTACAGTTACTTCTTTATGACGAAC
AGCACAGTATTCTGGGACTCATGTGCGGGAAGTTCGAACAGCTGTAAACT
AAGGAAGTTAGTAAATTAATTTAAAAATCGTTATCGCACGGTGTCAACTC
AGCGAGCCTTACGGCGCCTTTTTTGCCTTCATGAAACTCCTCGCACGTAA
AATATTGTTTTTGCGGCTTTAATGGTTGTACTCTGCCCTCGTTGCAATAG
TTCACGTTCTCTTGGCTAAAATACAACGAAGTCGTGTATGCAACGCAAAA
AAACACTTTCTTCGAGATCGAGCCCCATTTCCTTTTCCTTGTGATGCGCT
CAAATGTCGTACTTACTCTGCGAATTAGGCTGGAACAACAGGACGCCTCT
TCCTTTTGTTGGCAAAATTGATTCCCGCGAGCCCTACGCAGGCGATTTAA
TCGTGTTGGCGCATTTTTTTTCCAGGCGTTCCGTACTAAAAGTGTCGTCA
CCCAAGAGTGTCACAACATTGTCATCAAACGCAAGTCAAAAAGTGTCACT
TTTGTCTCACTAAAAGCAAGTCAAAGCGCGTCAACAAAAATGTCAACTTT
CAGAGCAGCCAGGGGGTACAAACCCGAACCCAGCCAAGGGAGGAGGGAGG
TGATGGAGCCAGCCGCAATTTGTGAAAGACGTAAGTGCAGGTCATGAGTG
ATGGCGGTCTGAAATAGACAGCCGAGGCTGAAAGCGCGGTTGCTGCTTTG
GAGTCAGCAGCAACAGGCCCAGAGAACAACGTTGTTACTGCGGCGCAGGA
GGCAGCAGCGTCATCGTCAGCAGCAGCAGCAATACACAGCACTGCCGTTG
ACAGTGAACGAAATAATAGAGACAAGCCAGCATCCTTGCACACTGTGCAT
TAGGGCGCTGCCGCTACTATTGCTGCAGCTTTTAAGTGGTGACGGCCGTG
AGATATATACAACGAAGAAGTAACCGGGATGAGATGATCGCAACAACAGC
ATGTAGGTTGCCTGGTATATACGGCAAGTTGCATACACCAACAAATTTTG
GACTTCCAACAAAAAACCAAGGCAACGTTAATCTTGCCCTGCTCCCTGCG
CGTCTACTGCACTATGCCGCGTGTGAATCGTCGCTATACTCGTCGAGATA
CAGCCGTTCCAACAAGTGGGGGGCGGGGACAGAATCATACATGAGATACA
CACAAAACGTCGCCGCTGGTATTTGAATTTCTTCCTTTCCTTTTTTTTTA
ATTATGCGCCATTAAAAAATTACTACGCATGATCTCCGCGCCGTGTGCTG
TATGCATGCATGTGATAGGAAAGAGGGCACTACGTAGTACACACACACAA
AAGAGGCAATCAACAGCAGCAGTCAGTGCGCGCATTATACTCAAGCTCAA
CAGAGTCCAGCTCCAACGCAGTGTTACTCACGAAAAAATCAGTTCTGTGC
GCACTGTTTTTCGTTTGTGTTGTGGTATTTTGTGTTGCGTTTTGTCGTGT
TGTTTTCATCCTCTACGCTGCATATTTCAAAATTTCGAAGTACCAAAAAC
ACAGCAGGAGTGCAGCCGCTCGTGTTCTTTCACGTCGCCATGGAATCGTC
CTCATTTCTACTTGATACTACACAGGCAGATGGGAAACGTCAACCCATTT
CAGTTGTGTCTCAGGTTGAGTCGGCCGTTCAGGCGATCGCAGGTGACTCA
CGTGGCGCCCGCAAAACTCAGGAGCAGTTCTCGAGGCAGTGCCGCGTCGT
TTCGCAGGCTCGATCTGCCGTGGAAGCGACGTACGACCTTGAGGCAGCAC
GCCAAAGGCATTTGGAATTCGTAGGGAACAATTTTGCCGCATTTTCGGAT
CAAAAACATGTCTGTTTCTATACGCACACGCAGCAGCATAAGGATTTATA
CTACAATAATAGAACTTGACATCATACATTTTAGCTATGGGTCTGTTTGG
CTTTACCAATATTGACTGCAGTTCTCACAGGGCTCTTGTTATTAGGGTTG
GTTGAAGGACCTCTGTCGTACATGACGGGGACGCTCTTCGTATTGAAATT
TTGCCGTTCTCGTTGTGAAGTACGGGTTGGTGTGAACAGCGCTACACGCA
ATGCAATGCCCAAATTTTAAGCGCCCTCCTGACCCCCCAGCTCAAACCCT
ATGTTGGACTGACATCCCATCTTATCACCCTCCGGGATATACAAAGGCGG
TCCCCTAGGGCCCTGTGGAGTGTTCGCGAAATGGAAAAAATGGAATCTCC
CTGCCCTCTGCGCTCTCAAATGAGGGCGCAACGCACCACATGCCCTAGAG
CTCAAAACGTACCTCGATTTTTTGTCTTGTGATACATTGTGCCTGGCCAG
AAGAAACGAAAAGGGGCACACCACTACTAGCTCTAGGTGCAGTCGACTGC
GAATGTCGGTGAAATTGCTCGAGGTAGCGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig150:29956..36587-

>mRNA_P-littoralis_Contig150.7.1 ID=mRNA_P-littoralis_Contig150.7.1|Name=mRNA_P-littoralis_Contig150.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=144bp|location=Sequence derived from alignment at P-littoralis_Contig150:29956..36587- (Pylaiella littoralis U1_48)
TGCTGGCGCGGCGGCGATTCAGGAACGACAGGGTCAGAGCCGACGCGCAA
CATCCGTGTATGTAAATCAAGCGTTCTACGAGAAGAAACGAAAAGGGGCA
CACCACTACTAGCTCTAGGTGCAGTCGACTGCGAATGTCGGTGA
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