mRNA_P-littoralis_Contig150.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig150.33.1
Unique NamemRNA_P-littoralis_Contig150.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig150.33.1 vs. uniprot
Match: A0A6H5KDP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP5_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 7.520e-33
Identity = 61/93 (65.59%), Postives = 72/93 (77.42%), Query Frame = 2
Query:    8 FEEMAGLLAVGVSTVKQWEREYRHKGHIALDVTGKYERRWILSLDDGLLVVIKQWIRTNSVKNGEPNMTAETFCEYLNTEILPQVAATATTDY 286
            FEE A    V  ST ++WE  YR KGHI +D  GK+ERRWILSLD+GLLV+++QWIR NS+KNGEPNMTAE F EYLN ++LPQVA T T DY
Sbjct:   91 FEETAEFFEVASSTPREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLVMVRQWIRVNSIKNGEPNMTAEGFREYLNKDVLPQVADTKTCDY 183          
BLAST of mRNA_P-littoralis_Contig150.33.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 5.940e-32
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    8 FEEMAGLLAVGVSTVKQWEREYRHKGHIALDVTGKYERRWILSLDDGLLVVIKQWIRTNSVKNGEPNMTAETFCEYLNTEILPQVAATATTDY 286
            FEE A    V  ST ++WE  YR KGHI ++  GK+ERRWILSLD+GLLV+++QWIR N +KNGEPNMTAE F EYLN ++LPQVA T T DY
Sbjct:  317 FEETAEFFEVASSTPREWELSYRTKGHIQVNQRGKHERRWILSLDEGLLVMVRQWIRVNCIKNGEPNMTAEGFREYLNKDVLPQVADTKTCDY 409          
BLAST of mRNA_P-littoralis_Contig150.33.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 7.680e-32
Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 2
Query:    8 FEEMAGLLAVGVSTVKQWEREYRHKGHIALDVTGKYERRWILSLDDGLLVVIKQWIRTNSVKNGEPNMTAETFCEYLNTEILPQVAATATTDY 286
            FE+ A    V  ST+++WE  YR KGHI +D  GK+ERRWILSLD+GLLVV++QW+R NS K GEPNMTA++F EYLNT ILP+VA T T DY
Sbjct:  302 FEDTAEFFEVADSTLREWELSYRTKGHIQVDQKGKHERRWILSLDEGLLVVVRQWVRVNSTKKGEPNMTADSFREYLNTVILPEVAETKTADY 394          
BLAST of mRNA_P-littoralis_Contig150.33.1 vs. uniprot
Match: A0A6H5KFI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 3.200e-30
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    8 FEEMAGLLAVGVSTVKQWEREYRHKGHIALDVTGKYERRWILSLDDGLLVVIKQWIRTNSVKNGEPNMTAETFCEYLNTEILPQVAATATTDY 286
            FEE A  L V V T+KQWE EYR KG I   VTG++ RRWILSLD+GLL VI+ +IR N+VKNGEPNMTA+TFC+Y+N  ILP++AAT    Y
Sbjct:   41 FEESAEFLQVSVGTIKQWELEYRTKGRI---VTGRHARRWILSLDEGLLAVIRFYIRNNAVKNGEPNMTAQTFCDYINKVILPEIAATKANGY 130          
BLAST of mRNA_P-littoralis_Contig150.33.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 7.640e-30
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 2
Query:    8 FEEMAGLLAVGVSTVKQWEREYRHKGHIALDVTGKYERRWILSLDDGLLVVIKQWIRTNSVKNGEPNMTAETFCEYLNTEILPQ 259
            FEE A    V  ST+++WE  YR KGHI +D  GK+ERRWILSLD+GLLV+++QWIR NS+KNGEPNMTAE F EYLN ++LPQ
Sbjct:  221 FEETAEFFEVASSTLREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLVMVRQWIRVNSIKNGEPNMTAEGFREYLNKDVLPQ 304          
BLAST of mRNA_P-littoralis_Contig150.33.1 vs. uniprot
Match: A0A6H5K534_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K534_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 9.700e-27
Identity = 52/84 (61.90%), Postives = 64/84 (76.19%), Query Frame = 2
Query:    8 FEEMAGLLAVGVSTVKQWEREYRHKGHIALDVTGKYERRWILSLDDGLLVVIKQWIRTNSVKNGEPNMTAETFCEYLNTEILPQ 259
            FEE A    V  ST+++WE  YR KGHI +D  GK+ERRWILSLD+GLLV+++Q IR NS+KNGE NM AE F EYLN ++LPQ
Sbjct:  295 FEETAEFFEVAFSTLREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLVMVRQSIRVNSIKNGERNMIAEGFREYLNKDVLPQ 378          
BLAST of mRNA_P-littoralis_Contig150.33.1 vs. uniprot
Match: A0A6H5JXQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.190e-19
Identity = 40/58 (68.97%), Postives = 51/58 (87.93%), Query Frame = 2
Query:   86 HIALDVTGKYERRWILSLDDGLLVVIKQWIRTNSVKNGEPNMTAETFCEYLNTEILPQ 259
            ++ +D  GK+ER WILSLD+GLLV+++QWIR NS+KNGEPNMTAE F EYLNT++LPQ
Sbjct:   24 YLKVDQRGKHERLWILSLDEGLLVMVRQWIRVNSIKNGEPNMTAEGFREYLNTDVLPQ 81          
BLAST of mRNA_P-littoralis_Contig150.33.1 vs. uniprot
Match: A0A6H5JGM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM4_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.830e-17
Identity = 47/93 (50.54%), Postives = 56/93 (60.22%), Query Frame = 2
Query:    8 FEEMAGLLAVGVSTVKQWEREYRHKGHIALDVTGKYERRWILSLDDGLLVVIKQWIRTNSVKNGEPNMTAETFCEYLNTEILPQVAATATTDY 286
            FEE A    V  ST+++WE  YR KGHI +D  GK+ERRWILSLD+GLLV                 M +E F EYLN ++LPQVA T T DY
Sbjct:  253 FEETAEFFQVASSTLREWELSYRTKGHIQVDQRGKHERRWILSLDEGLLV-----------------MPSEGFHEYLNKDVLPQVADTKTCDY 328          
BLAST of mRNA_P-littoralis_Contig150.33.1 vs. uniprot
Match: A0A6H5JX52_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX52_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 4.690e-13
Identity = 31/81 (38.27%), Postives = 52/81 (64.20%), Query Frame = 2
Query:   47 TVKQWEREYRHKGHIALDVTGKYERRWILSLDDGLLVVIKQWIRT-NSVKNGEPNMTAETFCEYLNTEILPQVAATATTDY 286
            TV++WER +  +GHI +   G+++R ++L LD+ +L   K W R    +  G+ N TAE F +++NT+I+P++ A  T DY
Sbjct:  317 TVREWERSFLARGHIKVSAAGRFQRNFLLGLDNSILTECKDWTRAWGGILKGQANKTAEDFRQFVNTDIMPKIEALMTPDY 397          
BLAST of mRNA_P-littoralis_Contig150.33.1 vs. uniprot
Match: A0A6H5JFH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFH8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.710e-10
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 2
Query:  140 DDGLLVVIKQWIRTNSVKNGEPNMTAETFCEYLNTEILPQV 262
            D+ LLV+++QWIR N +KNGEPNMTAE F EYLN ++LPQ+
Sbjct:   12 DEALLVMVRQWIRVNFIKNGEPNMTAEGFREYLNKDVLPQI 52          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig150.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KDP5_9PHAE7.520e-3365.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVH8_9PHAE5.940e-3263.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU25_9PHAE7.680e-3263.44Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KFI8_9PHAE3.200e-3063.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUL0_9PHAE7.640e-3065.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K534_9PHAE9.700e-2761.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXQ2_9PHAE1.190e-1968.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGM4_9PHAE1.830e-1750.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX52_9PHAE4.690e-1338.27Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFH8_9PHAE3.710e-1065.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig150contigP-littoralis_Contig150:121453..121955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size290
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789716.251198-CDS-P-littoralis_Contig150:121452..1215461680789716.251198-CDS-P-littoralis_Contig150:121452..121546Pylaiella littoralis U1_48CDSP-littoralis_Contig150 121453..121546 +
1680789716.2633328-CDS-P-littoralis_Contig150:121759..1219531680789716.2633328-CDS-P-littoralis_Contig150:121759..121953Pylaiella littoralis U1_48CDSP-littoralis_Contig150 121760..121953 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig150.33.1prot_P-littoralis_Contig150.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig150 121453..121953 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig150.33.1

>prot_P-littoralis_Contig150.33.1 ID=prot_P-littoralis_Contig150.33.1|Name=mRNA_P-littoralis_Contig150.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
SSFRGNGGSSGSGCKHRQAVGEGVPPQGPHRVGCHRQVRAAVDTEPGRRS
AGGNQTVDPHELCQERGTEHDCRDLLRIPQHGDPATSSRYRHHRLQ
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mRNA from alignment at P-littoralis_Contig150:121453..121955+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig150.33.1 ID=mRNA_P-littoralis_Contig150.33.1|Name=mRNA_P-littoralis_Contig150.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=503bp|location=Sequence derived from alignment at P-littoralis_Contig150:121453..121955+ (Pylaiella littoralis U1_48)
AGTAGTTTTCGAGGAAATGGCGGGTCTTCTGGCAGTGGGTGTAAGCACCG TCAAGCAGTGGGAGAGGGAGTACCGCCACAAGGGCCACATCGCGGTGAGT TCAACTACATACCGGCTGTCTTATTTATATTTTTAAGTATACATATCATT TCATGTGTCTCATATCATACAGCAGTCTGACCTCCATGAACATACTTTGC ATATTTACTACTACGCCACCAACCTATATATCGTATACTTATTAATATAT ATTGACACCACACTCCTCCCGTGTTCTTTGTGTCGTACGCCCGCATGTTG AAACCAGTTGGATGTCACCGGCAAGTACGAGCGGCGGTGGATACTGAGCC TGGACGACGGTCTGCTGGTGGTAATCAAACAGTGGATCCGCACGAACTCT GTCAAGAACGGGGAACCGAACATGACTGCCGAGACCTTCTGCGAATACCT CAACACGGAGATCCTGCCACAAGTAGCCGCTACCGCCACCACCGACTACA ACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig150:121453..121955+

>mRNA_P-littoralis_Contig150.33.1 ID=mRNA_P-littoralis_Contig150.33.1|Name=mRNA_P-littoralis_Contig150.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig150:121453..121955+ (Pylaiella littoralis U1_48)
AGTAGTTTTCGAGGAAATGGCGGGTCTTCTGGCAGTGGGTGTAAGCACCG
TCAAGCAGTGGGAGAGGGAGTACCGCCACAAGGGCCACATCGCGTTGGAT
GTCACCGGCAAGTACGAGCGGCGGTGGATACTGAGCCTGGACGACGGTCT
GCTGGTGGTAATCAAACAGTGGATCCGCACGAACTCTGTCAAGAACGGGG
AACCGAACATGACTGCCGAGACCTTCTGCGAATACCTCAACACGGAGATC
CTGCCACAAGTAGCCGCTACCGCCACCACCGACTACAA
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