mRNA_P-littoralis_Contig150.32.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE) HSP 1 Score: 108 bits (269), Expect = 4.920e-24 Identity = 72/159 (45.28%), Postives = 92/159 (57.86%), Query Frame = 1
Query: 49 DAAPSREKRPRDCQQNSQDPXXXXENR-GGAREGSGRPKGSYGPERMRTLLRKCEAFLRDGMAQSAHEATWDISAAKMLAAAVAVENNWAELTINRPYLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAAT 522
+AAP REKRPRDC+ + + GGAR GSGRPKGSYG +R+R ++ ++ G A A+ D+ ML A V + + +LK Q N+GVGRK A+RKLAK RSQ E AA A+ ACR GW G +YF V KEC A AA +
Sbjct: 106 EAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPG-DMLDAVKEVHQH--QEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATS 261
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE) HSP 1 Score: 108 bits (269), Expect = 6.280e-24 Identity = 72/159 (45.28%), Postives = 92/159 (57.86%), Query Frame = 1
Query: 49 DAAPSREKRPRDCQQNSQDPXXXXENR-GGAREGSGRPKGSYGPERMRTLLRKCEAFLRDGMAQSAHEATWDISAAKMLAAAVAVENNWAELTINRPYLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAAT 522
+AAP REKRPRDC+ + + GGAR GSGRPKGSYG +R+R ++ ++ G A A+ D+ ML A V + + +LK Q N+GVGRK A+RKLAK RSQ E AA A+ ACR GW G +YF V KEC A AA +
Sbjct: 106 EAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPG-DMLDAVKEVHQH--QEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATS 261
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE) HSP 1 Score: 105 bits (262), Expect = 2.690e-23 Identity = 69/156 (44.23%), Postives = 88/156 (56.41%), Query Frame = 1
Query: 58 PSREKRPRDCQQN---SQDPXXXXENRGGAREGSGRPKGSYGPERMRTLLRKCEAFLRDGMAQSAHEATWDISAAKMLAAAVAVENNWAELTINRP-YLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATA 513
P REKR RDCQ RGGAR G+GRPKGSYG +R+R ++ +L G Q A + D+ A + AV+ + + RP +LK Q N+GVGRK A+RKLAK RSQ E AA A+ ACR GW G +YF V KEC ++
Sbjct: 113 PPREKRLRDCQHRLCCGITGDAPPGKRGGARPGAGRPKGSYGRKRLRQAAQQLNYYLERGQLQCAQMVSRDLPGAM----SYAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVASAACRSGWEGGQDYFRAVIKECQSCSS 264
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE) HSP 1 Score: 102 bits (255), Expect = 4.550e-22 Identity = 66/160 (41.25%), Postives = 88/160 (55.00%), Query Frame = 1
Query: 49 DAAPSREKRPRDCQQNSQDPXXXXEN-RGGAREGSGRPKGSYGPERMRTLLRKCEAFLRDGMAQSAHEATWDISAAKMLAAAVAVENNWAELTINRP-YLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAAT 522
+ P REKRPRDCQ ++ RGGAR G+GRPKGSYG R+R ++ +L G Q A + D+ A + AV+ + + RP +LK Q N+G+GRK A+RKLAK +SQ + A A+ ACR GW G V KEC A A +
Sbjct: 25 EVTPPREKRPRDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRNRLRQAAQQLNGYLERGQLQCAQMVSRDLPGAML----DAVKEAHQQEVVYRPAFLKRQSNRGLGRKEALRKLAKHQSQLQKEAAASAACRSGWERGQGCLRAVIKECQSAIAVTS 180
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Match: A0A6H5JGM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM4_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 3.130e-21 Identity = 70/173 (40.46%), Postives = 93/173 (53.76%), Query Frame = 1
Query: 49 DAAPSREKRPRDCQQNSQDPXXXXEN-RGGAREGSGRPKGSYGPERMRTLLRKCEAFLRDGMAQSAHEATWDISAAKMLAAAVAVENNWAELTINRP---YLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAATGHDAEVSIKYE 555
+AAP REKRPRDCQ + RGGAR G+GRPKGSYG +R+ ++ +L G Q A + D+ A + AV+ + + RP +LK Q N RK A+RKL K RSQ E AA A+ ACR GW G +YF V KEC A A + S++++
Sbjct: 67 EAAPPREKRPRDCQHAAASTGDAPPGTRGGARPGAGRPKGSYGRKRLPQAAQQLNDYLERGQLQCAQMVSRDLPGAM----SDAVKEAHQQEEVYRPAXAFLKRQSN---SRKEALRKLTKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAVTSAGLNAGSLQFK 232
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Match: D7G1V5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V5_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 4.260e-15 Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 1
Query: 277 MLAAAVAVENNWAELTINRPYLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAAT-GHDAEVSIKY 552
MLAA+ V+ + E +LK Q N+GVGRK A+RKLAK RSQ E A+ A+ AC+ GW G+EYF V KEC GA AA + G + + + +
Sbjct: 1 MLAASQEVDKH--EKDWQPAFLKRQSNRGVGRKEALRKLAKHRSQLEKASLASAACKAGWEKGLEYFRAVAKECNGAVAATSAGLEETIDVSH 91
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Match: A0A6H5LDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDJ5_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 3.760e-13 Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 295 AVENNWAELTINRP-YLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAAT 522
AV+ + + RP +LK Q N+GVGRK A+RKLAK RSQ E AA A+ ACR GW G +YF V KEC A A ++
Sbjct: 4 AVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQFAVAVSS 80 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig150.32.1 >prot_P-littoralis_Contig150.32.1 ID=prot_P-littoralis_Contig150.32.1|Name=mRNA_P-littoralis_Contig150.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=186bp GDSSVDDARASMDAHQDAAPSREKRPRDCQQNSQDPPPPPENRGGAREGSback to top mRNA from alignment at P-littoralis_Contig150:120508..121065+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig150.32.1 ID=mRNA_P-littoralis_Contig150.32.1|Name=mRNA_P-littoralis_Contig150.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig150:120508..121065+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig150:120508..121065+ >mRNA_P-littoralis_Contig150.32.1 ID=mRNA_P-littoralis_Contig150.32.1|Name=mRNA_P-littoralis_Contig150.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig150:120508..121065+ (Pylaiella littoralis U1_48)back to top |