mRNA_P-littoralis_Contig150.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig150.32.1
Unique NamemRNA_P-littoralis_Contig150.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.920e-24
Identity = 72/159 (45.28%), Postives = 92/159 (57.86%), Query Frame = 1
Query:   49 DAAPSREKRPRDCQQNSQDPXXXXENR-GGAREGSGRPKGSYGPERMRTLLRKCEAFLRDGMAQSAHEATWDISAAKMLAAAVAVENNWAELTINRPYLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAAT 522
            +AAP REKRPRDC+  +         + GGAR GSGRPKGSYG +R+R   ++   ++  G    A  A+ D+    ML A   V  +  +      +LK Q N+GVGRK A+RKLAK RSQ E AA A+ ACR GW  G +YF  V KEC  A AA +
Sbjct:  106 EAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPG-DMLDAVKEVHQH--QEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATS 261          
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 6.280e-24
Identity = 72/159 (45.28%), Postives = 92/159 (57.86%), Query Frame = 1
Query:   49 DAAPSREKRPRDCQQNSQDPXXXXENR-GGAREGSGRPKGSYGPERMRTLLRKCEAFLRDGMAQSAHEATWDISAAKMLAAAVAVENNWAELTINRPYLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAAT 522
            +AAP REKRPRDC+  +         + GGAR GSGRPKGSYG +R+R   ++   ++  G    A  A+ D+    ML A   V  +  +      +LK Q N+GVGRK A+RKLAK RSQ E AA A+ ACR GW  G +YF  V KEC  A AA +
Sbjct:  106 EAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPG-DMLDAVKEVHQH--QEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATS 261          
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Match: A0A6H5JVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVH8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.690e-23
Identity = 69/156 (44.23%), Postives = 88/156 (56.41%), Query Frame = 1
Query:   58 PSREKRPRDCQQN---SQDPXXXXENRGGAREGSGRPKGSYGPERMRTLLRKCEAFLRDGMAQSAHEATWDISAAKMLAAAVAVENNWAELTINRP-YLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATA 513
            P REKR RDCQ               RGGAR G+GRPKGSYG +R+R   ++   +L  G  Q A   + D+  A     + AV+    +  + RP +LK Q N+GVGRK A+RKLAK RSQ E AA A+ ACR GW  G +YF  V KEC   ++
Sbjct:  113 PPREKRLRDCQHRLCCGITGDAPPGKRGGARPGAGRPKGSYGRKRLRQAAQQLNYYLERGQLQCAQMVSRDLPGAM----SYAVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAVASAACRSGWEGGQDYFRAVIKECQSCSS 264          
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.550e-22
Identity = 66/160 (41.25%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   49 DAAPSREKRPRDCQQNSQDPXXXXEN-RGGAREGSGRPKGSYGPERMRTLLRKCEAFLRDGMAQSAHEATWDISAAKMLAAAVAVENNWAELTINRP-YLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAAT 522
            +  P REKRPRDCQ  ++         RGGAR G+GRPKGSYG  R+R   ++   +L  G  Q A   + D+  A +     AV+    +  + RP +LK Q N+G+GRK A+RKLAK +SQ +  A A+ ACR GW  G      V KEC  A A  +
Sbjct:   25 EVTPPREKRPRDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRNRLRQAAQQLNGYLERGQLQCAQMVSRDLPGAML----DAVKEAHQQEVVYRPAFLKRQSNRGLGRKEALRKLAKHQSQLQKEAAASAACRSGWERGQGCLRAVIKECQSAIAVTS 180          
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Match: A0A6H5JGM4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM4_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 3.130e-21
Identity = 70/173 (40.46%), Postives = 93/173 (53.76%), Query Frame = 1
Query:   49 DAAPSREKRPRDCQQNSQDPXXXXEN-RGGAREGSGRPKGSYGPERMRTLLRKCEAFLRDGMAQSAHEATWDISAAKMLAAAVAVENNWAELTINRP---YLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAATGHDAEVSIKYE 555
            +AAP REKRPRDCQ  +          RGGAR G+GRPKGSYG +R+    ++   +L  G  Q A   + D+  A     + AV+    +  + RP   +LK Q N    RK A+RKL K RSQ E AA A+ ACR GW  G +YF  V KEC  A A  +      S++++
Sbjct:   67 EAAPPREKRPRDCQHAAASTGDAPPGTRGGARPGAGRPKGSYGRKRLPQAAQQLNDYLERGQLQCAQMVSRDLPGAM----SDAVKEAHQQEEVYRPAXAFLKRQSN---SRKEALRKLTKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAVTSAGLNAGSLQFK 232          
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Match: D7G1V5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V5_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 4.260e-15
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  277 MLAAAVAVENNWAELTINRPYLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAAT-GHDAEVSIKY 552
            MLAA+  V+ +  E      +LK Q N+GVGRK A+RKLAK RSQ E A+ A+ AC+ GW  G+EYF  V KEC GA AA + G +  + + +
Sbjct:    1 MLAASQEVDKH--EKDWQPAFLKRQSNRGVGRKEALRKLAKHRSQLEKASLASAACKAGWEKGLEYFRAVAKECNGAVAATSAGLEETIDVSH 91          
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Match: A0A6H5LDJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDJ5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.760e-13
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  295 AVENNWAELTINRP-YLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACREGWSSGVEYFERVQKECLGATAAAT 522
            AV+    +  + RP +LK Q N+GVGRK A+RKLAK RSQ E AA A+ ACR GW  G +YF  V KEC  A A ++
Sbjct:    4 AVKEAHQQEEVYRPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQFAVAVSS 80          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig150.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KAS5_9PHAE4.920e-2445.28Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU25_9PHAE6.280e-2445.28Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVH8_9PHAE2.690e-2344.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUL0_9PHAE4.550e-2241.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGM4_9PHAE3.130e-2140.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1V5_ECTSI4.260e-1547.31Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5LDJ5_9PHAE3.760e-1351.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig150contigP-littoralis_Contig150:120508..121065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size559
Hectar predicted targeting categoryother localisation
Exons1
Cds size558
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789717.5974755-CDS-P-littoralis_Contig150:120507..1210651680789717.5974755-CDS-P-littoralis_Contig150:120507..121065Pylaiella littoralis U1_48CDSP-littoralis_Contig150 120508..121065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig150.32.1prot_P-littoralis_Contig150.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig150 120508..121065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig150.32.1

>prot_P-littoralis_Contig150.32.1 ID=prot_P-littoralis_Contig150.32.1|Name=mRNA_P-littoralis_Contig150.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=186bp
GDSSVDDARASMDAHQDAAPSREKRPRDCQQNSQDPPPPPENRGGAREGS
GRPKGSYGPERMRTLLRKCEAFLRDGMAQSAHEATWDISAAKMLAAAVAV
ENNWAELTINRPYLKSQPNKGVGRKSAIRKLAKKRSQWENAATAAKACRE
GWSSGVEYFERVQKECLGATAAATGHDAEVSIKYE*
back to top

mRNA from alignment at P-littoralis_Contig150:120508..121065+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig150.32.1 ID=mRNA_P-littoralis_Contig150.32.1|Name=mRNA_P-littoralis_Contig150.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig150:120508..121065+ (Pylaiella littoralis U1_48)
GGTGACAGCAGCGTGGATGATGCTCGTGCCAGCATGGATGCACACCAAGA TGCCGCTCCTTCCCGAGAAAAGCGGCCACGGGACTGTCAACAAAATTCTC AGGATCCACCGCCACCTCCTGAGAACCGCGGGGGAGCACGCGAAGGCAGC GGTAGGCCGAAGGGGAGCTACGGCCCTGAGAGGATGCGGACGCTCCTGCG CAAGTGTGAAGCGTTCCTTCGAGACGGCATGGCTCAATCTGCGCACGAAG CGACGTGGGATATTTCTGCTGCCAAGATGCTTGCTGCGGCGGTTGCGGTG GAAAACAATTGGGCGGAGTTGACTATTAATAGACCGTACCTCAAAAGTCA ACCCAACAAGGGCGTGGGCAGGAAGAGCGCTATTAGGAAGCTGGCGAAGA AGAGGTCACAGTGGGAGAACGCGGCAACAGCAGCCAAGGCATGTAGAGAA GGGTGGAGCAGTGGAGTGGAGTACTTCGAACGCGTGCAAAAAGAATGCCT TGGAGCAACCGCAGCAGCTACCGGCCATGATGCCGAGGTGAGCATAAAAT ATGAGTAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig150:120508..121065+

>mRNA_P-littoralis_Contig150.32.1 ID=mRNA_P-littoralis_Contig150.32.1|Name=mRNA_P-littoralis_Contig150.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=558bp|location=Sequence derived from alignment at P-littoralis_Contig150:120508..121065+ (Pylaiella littoralis U1_48)
GGTGACAGCAGCGTGGATGATGCTCGTGCCAGCATGGATGCACACCAAGA
TGCCGCTCCTTCCCGAGAAAAGCGGCCACGGGACTGTCAACAAAATTCTC
AGGATCCACCGCCACCTCCTGAGAACCGCGGGGGAGCACGCGAAGGCAGC
GGTAGGCCGAAGGGGAGCTACGGCCCTGAGAGGATGCGGACGCTCCTGCG
CAAGTGTGAAGCGTTCCTTCGAGACGGCATGGCTCAATCTGCGCACGAAG
CGACGTGGGATATTTCTGCTGCCAAGATGCTTGCTGCGGCGGTTGCGGTG
GAAAACAATTGGGCGGAGTTGACTATTAATAGACCGTACCTCAAAAGTCA
ACCCAACAAGGGCGTGGGCAGGAAGAGCGCTATTAGGAAGCTGGCGAAGA
AGAGGTCACAGTGGGAGAACGCGGCAACAGCAGCCAAGGCATGTAGAGAA
GGGTGGAGCAGTGGAGTGGAGTACTTCGAACGCGTGCAAAAAGAATGCCT
TGGAGCAACCGCAGCAGCTACCGGCCATGATGCCGAGGTGAGCATAAAAT
ATGAGTAA
back to top