mRNA_P-littoralis_Contig150.28.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig150.28.2
Unique NamemRNA_P-littoralis_Contig150.28.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig150.28.2 vs. uniprot
Match: A0A6H5JZV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZV9_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 1.530e-63
Identity = 142/276 (51.45%), Postives = 166/276 (60.14%), Query Frame = 3 
Query:   48 MAPPDNHAKSIGDDDERYTTCKGLLAYAGKQRAKGQEPLCLGFKALLPPTIVITDXXXXXXXXEDTMFTFYGVGVSVYSKEMLSKNRLPLVNGFSRLTVVKEQEEGEAAPQQRRQKQIDGTKEEVMGGRRHGLAQGQRKPQQHVVDAHGVVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDQVDALLDYAVGRVKKQVEMTKQVAEELTKLTPGKLREAAVVQAKKVKEMPTLLLDTSKRMVGSGAKFVQNYIDEQERK 875
            M   D HA ++ DD  +Y +CKG+LAYAG+QRA GQEP CLGFK  LPP I+I  XXXXXXXX    F F GVGVSVY+KEMLS NRLPLVNGFS+L V KE+E  +       +    G  E     R HG  +G R+PQ H        GG                                           R QV+AL+ YAVGR++KQVE+T QV +EL KLTPGKLREA VVQA KV+EMPTLLLDTSKRMV SG KFV+NY++EQERK
Sbjct:    1 MPESDKHA-TVEDDGNQYMSCKGILAYAGQQRAVGQEPQCLGFKTALPPNIIIXXXXXXXXXXXXAKFFFIGVGVSVYNKEMLSNNRLPLVNGFSQLVVSKEEERDKTDALHNGR---IGEYEAAAAARHHG--RGNRQPQPHTAAEASAQGGRQGAAVPTTLSQRSGVAGDGVEERSSSTTG-------------RKQVEALMSYAVGRIRKQVEITMQVTDELKKLTPGKLREATVVQANKVQEMPTLLLDTSKRMVDSGTKFVRNYLEEQERK 257
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BLAST of mRNA_P-littoralis_Contig150.28.2 vs. uniprot
Match: D8LTV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV3_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 5.070e-34
Identity = 92/204 (45.10%), Postives = 114/204 (55.88%), Query Frame = 3 
Query:  264 VGVSVYSKEMLSKNRLPLVNGFSRLTVVKEQEEGEAAPQQRRQKQIDGTKEEVMGGRRHGLAQGQRKPQQHVVDAHGVVGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDQVDALLDYAVGRVKKQVEMTKQVAEELTKLTPGKLREAAVVQAKKVKEMPTLLLDTSKRMVGSGAKFVQNYIDEQERK 875
            +GVSVY+KEMLS NRLPLVNGFS+L V KE+E+ +A  +   +K      E           +G  +PQ H        GG                                           R QV+AL+ YAVGR++KQV++T QV +EL KLTP K+REA VVQA KV+EMPTLLLDTSKRMV SG KFV+NY++EQERK
Sbjct:    1 MGVSVYNKEMLSNNRLPLVNGFSQLLVSKEEEKDKADARHNGRKG-----EHEADXXXXXXXRGHLQPQPHAAAEAPAQGGRQGAAVPTTLSQRSGVAGDGVEEGSSSTTG-------------RKQVEALMAYAVGRIRKQVDITIQVTDELKKLTPEKVREATVVQANKVQEMPTLLLDTSKRMVDSGTKFVRNYLEEQERK 186
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig150.28.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZV9_9PHAE1.530e-6351.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTV3_ECTSI5.070e-3445.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig150contigP-littoralis_Contig150:110349..115313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1745
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002620.1
Cds size834
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789717.4675517-UTR-P-littoralis_Contig150:110348..1112121680789717.4675517-UTR-P-littoralis_Contig150:110348..111212Pylaiella littoralis U1_48UTRP-littoralis_Contig150 110349..111212 -
1680789717.5143604-UTR-P-littoralis_Contig150:115266..1153131680789717.5143604-UTR-P-littoralis_Contig150:115266..115313Pylaiella littoralis U1_48UTRP-littoralis_Contig150 115267..115313 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789717.480848-CDS-P-littoralis_Contig150:111212..1118711680789717.480848-CDS-P-littoralis_Contig150:111212..111871Pylaiella littoralis U1_48CDSP-littoralis_Contig150 111213..111871 -
1680789717.489132-CDS-P-littoralis_Contig150:113478..1135971680789717.489132-CDS-P-littoralis_Contig150:113478..113597Pylaiella littoralis U1_48CDSP-littoralis_Contig150 113479..113597 -
1680789717.5017908-CDS-P-littoralis_Contig150:115210..1152661680789717.5017908-CDS-P-littoralis_Contig150:115210..115266Pylaiella littoralis U1_48CDSP-littoralis_Contig150 115211..115266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig150.28.2prot_P-littoralis_Contig150.28.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig150 111213..115266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig150.28.2

>prot_P-littoralis_Contig150.28.2 ID=prot_P-littoralis_Contig150.28.2|Name=mRNA_P-littoralis_Contig150.28.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=278bp
MAPPDNHAKSIGDDDERYTTCKGLLAYAGKQRAKGQEPLCLGFKALLPPT
IVITDEDVVPPPPEDTMFTFYGVGVSVYSKEMLSKNRLPLVNGFSRLTVV
KEQEEGEAAPQQRRQKQIDGTKEEVMGGRRHGLAQGQRKPQQHVVDAHGV
VGGARRGQQEQQQQQKQQGSAVPATLSERRSGANSSNGGEERGGGGRDQV
DALLDYAVGRVKKQVEMTKQVAEELTKLTPGKLREAAVVQAKKVKEMPTL
LLDTSKRMVGSGAKFVQNYIDEQERKK*
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mRNA from alignment at P-littoralis_Contig150:110349..115313-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig150.28.2 ID=mRNA_P-littoralis_Contig150.28.2|Name=mRNA_P-littoralis_Contig150.28.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4965bp|location=Sequence derived from alignment at P-littoralis_Contig150:110349..115313- (Pylaiella littoralis U1_48)
GCTGGAGGTCGCGGTACTTCACCTGCTGCTCAGCGGGAGTCCTTGCTATG
GCACCGCCTGATAATCACGCGAAGTCTATCGGAGATGACGACGAGCGCTA
TACGTGAGTACCAGCAACAGCTCGAAACCCGGTCGATTTTTTATCCCCCC
GCGTTTTTACCGACAATACCTCTTGGTTGGAGAGCAAACAGCGAAGGACA
CCTGCTACATTAAAGTAGCAAGTGTTTCGAGAGTTGTTCGAGGTTTGGGG
TACGGCCCTCCCTACAAAAGTGGAGACAAAGCGACCGGTAGTTGTTGACA
CCACTCAGTCCAATCCGCCACGTTCGCGTGCCCGAGAAGTACATGTATTT
CGCCTGAGGTTTGGGCATACCGTTTACTTATCGTCCCATCGTCCCCACAC
GATTACTCACAACGCGACCCAATCTGATGCCCGGCGACTCAGACATTGTA
CAGCAGTTCTCTTTCAAGGTAAACCAATAGTATAAAGGTATCGGCGTGGT
TTTGTTGACTACCGTAATCCAGCTGTAGCCTTACATATGCTCTATATCGT
CCTCTATGCGGAAAGGGATGACTAGATAGATTAAACATCAGCTCAAGGCT
TTAGAATCGGGTGTTCGTCTTTCTGTAGGCGACGATCTGAAGTACTTCGT
ACGTAAAAGAAGAGCGATCATTTTGTAAAATGTGACTATGACGAGGGGTA
CAGCAGTGTATACCCATACCCATTTGCAGTTTTGTGTTTTCCATCACTCA
TCAGGTATGTGTGTGTGTGTGTGTGTTGTCATCCCTTTAATTGGACGCCA
CTCTAGACCTTTCGGGTAGGTCGACGCTCCAACTGGGGTCACACAGGGGG
AAGTCAACACAGGAGTTTTTGTTTTTGTTTTTGTTTTTTTTCTCCACTTC
CCTCTGCCGTTCTTGCCTTGTTTTGGTTGAGCTTTTATCGCGAGAAAGGG
GACAGCGATCCCTTTCCCTCGTGGATGGTACGATCGAATTTTGTTTACTC
ACGAATTAATCGCTTTCCACTTTCACGCGCGTTGTGAGAAGAAAACCCAG
ATCGTGTTACTGCACTGGGATTCGAACTCACGCGTGAATGTCAGAAGGTT
TCGTGGATTACCAACCGAACCACCGGGGCGACAGGTAATGCTGTCTTTTT
GAAAAGGGCGGCGCGCATGCTGAGAAAGAAAAGGAAAAGCTTGCACCTGC
TTCAAGGGGCATATTTATGGCCGGATATAACGGCATGTATTGACAAAGAG
GCCAAAATGCCGCTTCTGCAGCGCCGCTACTCCTCAAATCGGCTCTAAGT
GGCTTAAAGCATCAGATGAAAGCGGGAGGAACAGCAGCGAAGTTGTTCAC
ACAAATTACTTTCGATTGCGTCAGCCACGCGTCCCCCGTGTAGTAGTATG
ACGTGTAGATACAGCAGCAGTGACGGATTGCCATGACTGTAGATCACCTG
CCATCAGGGCACACCAACAATTGTGTGAACCCGGCACCACACGCAGCAGC
AGTAGAGCGGTAGTACAAGATTAGATTCACGGTAGGATTCTACGCCCACG
TGCTATCGTACGTTCTCGCTTGACCTCGGCATCCGAGCAACCATCTGCCT
CTTCATGCTTTTCGACTCGGCGCCTGGCGATTCCTCCCGCCCGCGATGCC
GACTCTAGCTTGCTGCGTTGTTCCACGCATGCATATGATGCGTGCAAATT
ACATGCGATCTGGCAGGACTTGCAAAGGACTTCTCGCGTACGCCGGGAAG
CAGCGGGCAAAGGGACAAGAGCCGCTCTGCCTCGGCTTCAAGGCGCTCTT
GCCGCCAACTATTGTCATCACCGACGAAGACGTCGGTGAGTGCGTGATTT
GTGGGTTGCCGTGTTGTTTGTTTTTGCTGCTGCTGCTGCTGCTGCTGCTG
CCGTTGTGAATGTTGTCTTCGTGTGCACATCATTCGAACGTGTCCGGACT
AAATCCTCCCCATCTAGCTACGAAACCGTTCTTCTACCTGGATAGTAAAG
GCATCGGTGACCATCTCTCCCCAGGCGTGTGCGGCACGCGAGTTTTAAAA
TCTAGATGGTTTTAAATCGTTGCGCAGGGGTGTTACATGGGATATCAGCA
CAAGAAAGGTGAATCTGGCAACCTGTTTATTTCAGAAACTTTCGATTTGA
GGCGGCGATCTCAGCACCGCCGATCGCGTCCTTGTGCATTTTGGCGCCGA
TGTGCAGGCGTTGTTTTTGGTACTTTTGGACTGTTGGCGGTACAGAACGA
TTCGCGGGGAAGTTGGGTGTGTATGTGATCAGGGTGAAGGGACTACGTAC
GTGTGTATAAGGCCCCGTGTATTAACTCTTATGTTTTTCATGTTCGTGCT
TGGCTTTTCCTGTCTCCCCGTGGGGTTTATTGGTACTTGCATGGTTCGTT
ACATACCAAAACGTATGGGATAGCAGGGACGCCTTCGTCCATTCGCACGC
TGACATGGGGTTACGGGTCTGAAAATATAGAGGGATGATGTCATTTTGCT
CTCCTCATATGTTTTAATCTACTCATGTGCAGTTTCGCTTGAACTCAAGA
CAACTGAGGTCTAGCTCTTGCAACATAAGCCAGCGGGCCACAACCTACAC
CAGTAGCTGACGCAAGATTTCGTCCCCTCTCAAAAGGTACCGACCACCCG
CACTTATTCGGAATTTGCCGTTTTGAAGTTTCGCGTGAACTCAGACAACT
TGAGGTTCCCAGTTTTGCAGCACCCAGAGGATACGCGATCGAAGCAATGA
CTGCTGTGGCATGATCACATCCTTCCTTGAGGCAGGCACCATTCACCTTC
CATGAGAAACCATACCCCTGTAATCACTACTTCTGCTGTTTGATGTTCCT
AGTACTCGTAAATATATTGTTGGATGGTTCATTTCTCGATGGCATTCGAG
AGCATCGAGTCTATATGAGGTGCATGTGTGATTTGTGAACACACCCCCTC
TATGATCCGATATTTCTTCTCATGTCATTTCAGACCACGAAGGTTTGACG
CTGTCCCTGCCCTTTCCAAGAGCGCCCAAACGTTGATGGCAACTCTGATT
CGCTAGCAGGAGTAGGAACGGTTCTAGGGACGGTTCTAGAAACGGTTCTG
CGTCTCGAAAGTGATGATCGGTCAGTAATGAGCCACAAAGCACGCAACAA
ATGAGTGCCCCCCCCGTCCCCGTCCCCCGCCCCCGCCCCCGCCCCTGTAC
TTGCCTTTCCGACGTATTACAAGCCCTGCCTGACCCCAGTGCATCGCACG
AAACTAGATTTGCTACCGAACATAATGGTCTTGAAGGACACTCTTCGCAA
CACCCAACCCTACCTTTTGTCTCGTGTCCGCGAAATCTTCATCTTCCTCT
TTGTTTCGTGTCGGTGAAATCTCCCATCTTGTCTTTTTGTGTCCGTGAAA
TATTTCGATCGGCCCAACCCCCCCCCCTCCCCGGCCCGTCAGTACCACCG
CCACCGGAGGACACGATGTTCACCTTCTACGGAGTCGGCGTGTCGGTGTA
CAGCAAGGAGATGCTCTCGAAGAACCGCCTTCCGCTTGTGAATGGTTTCA
GCCGGCTTACTGTGGTGAAGGAGCAAGAAGAGGGGGAAGCGGCGCCGCAA
CAGCGAAGACAAAAACAAATCGACGGAACCAAGGAGGAGGTGATGGGCGG
CCGTCGACACGGACTCGCACAAGGCCAGCGAAAACCGCAGCAACACGTGG
TTGACGCCCACGGGGTTGTCGGAGGCGCACGTCGCGGGCAGCAGGAGCAG
CAGCAGCAGCAGAAGCAGCAGGGCAGCGCGGTTCCGGCAACGCTATCCGA
ACGCCGTAGCGGCGCTAACAGTAGTAATGGCGGGGAGGAGAGGGGTGGGG
GCGGGCGCGACCAGGTAGATGCTTTGTTGGACTACGCGGTTGGGCGGGTG
AAGAAGCAGGTGGAGATGACCAAGCAGGTCGCGGAGGAGCTCACGAAGCT
CACGCCCGGGAAGCTGCGAGAAGCGGCGGTCGTTCAGGCGAAGAAAGTTA
AGGAGATGCCGACCTTGTTGTTGGACACCTCCAAGAGAATGGTTGGGTCC
GGCGCGAAGTTTGTCCAGAATTACATTGACGAGCAAGAGAGGAAAAAGTG
AACACGCTTGCCTTGTGTGGTGTTGTTGTTGTTGGTGGTGGTGGTGGTCT
ATGGTATCATGGTTCGAAGCGGTCTGGCTGCAGTGGCAACTTTGTCTGCG
AGCCCAGCTGTTTATTTTCGCATCGCGGTATGATACGTTTGTCGTTCGAT
GAGGGAAATCTTATTTGGACGGATATTGTAGCTGAATGCAGTGATCATGC
ACGTTTGTTGGCATGGAAGTTTTATGGCGCGGGTAGTGGTTTGTTTGTGC
TGAAATAGCTCTTCGGTCGTATGTTTGTAAAAATAATTCCTCTTGCTTGT
TTTTGATCACCGGTGGTGTATGGTGTGTATGATATGTAGGAGGGAAAAAG
TTTGAATAGGAGGATGTGATGCCTGGGATAACTCGTTACACAACAACAGC
AGCGTGGTGGTAACGCCCCCCCCATACAGTACGTACCTGCCAAATAGATA
AATAAAAGCAGGAATTTATCTGTGTTGTTGTCAACCCTTTAATTGGACGC
CACTCTGCACCTTTCGGGTAGGTAGACGCTCCAACTGGGGTCACACAGGG
GGAAGTCAACACAGGAGTTTTTTTTTTTTCTCCGCTTCCCTGTGCGATGC
TTGCCTTGTTCTTGGTTGAGCTTTCATCGCGAGAAAGGGGACAGCGATCC
CTTTCCCTCGTCGATGGTACGATCGAATTTTGTTTACTCACGAATGAATC
GCTTTCCACTTTCACGCGCATTGTAAGAAGAAAACCCAGGTCGTGTTACT
GCACTGAGATTCGAACTCACGCGTGAATGTCAGAAGGTTACGTGGGTTAC
CAACTGAACCACCCGGGGCGACCGGTGTATCTGGAGGAGATAATTTCTGG
GATAACTCGTGACGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig150:110349..115313-

>mRNA_P-littoralis_Contig150.28.2 ID=mRNA_P-littoralis_Contig150.28.2|Name=mRNA_P-littoralis_Contig150.28.2|organism=Pylaiella littoralis U1_48|type=CDS|length=834bp|location=Sequence derived from alignment at P-littoralis_Contig150:110349..115313- (Pylaiella littoralis U1_48)
ATGGCACCGCCTGATAATCACGCGAAGTCTATCGGAGATGACGACGAGCG
CTATACGACTTGCAAAGGACTTCTCGCGTACGCCGGGAAGCAGCGGGCAA
AGGGACAAGAGCCGCTCTGCCTCGGCTTCAAGGCGCTCTTGCCGCCAACT
ATTGTCATCACCGACGAAGACGTCGTACCACCGCCACCGGAGGACACGAT
GTTCACCTTCTACGGAGTCGGCGTGTCGGTGTACAGCAAGGAGATGCTCT
CGAAGAACCGCCTTCCGCTTGTGAATGGTTTCAGCCGGCTTACTGTGGTG
AAGGAGCAAGAAGAGGGGGAAGCGGCGCCGCAACAGCGAAGACAAAAACA
AATCGACGGAACCAAGGAGGAGGTGATGGGCGGCCGTCGACACGGACTCG
CACAAGGCCAGCGAAAACCGCAGCAACACGTGGTTGACGCCCACGGGGTT
GTCGGAGGCGCACGTCGCGGGCAGCAGGAGCAGCAGCAGCAGCAGAAGCA
GCAGGGCAGCGCGGTTCCGGCAACGCTATCCGAACGCCGTAGCGGCGCTA
ACAGTAGTAATGGCGGGGAGGAGAGGGGTGGGGGCGGGCGCGACCAGGTA
GATGCTTTGTTGGACTACGCGGTTGGGCGGGTGAAGAAGCAGGTGGAGAT
GACCAAGCAGGTCGCGGAGGAGCTCACGAAGCTCACGCCCGGGAAGCTGC
GAGAAGCGGCGGTCGTTCAGGCGAAGAAAGTTAAGGAGATGCCGACCTTG
TTGTTGGACACCTCCAAGAGAATGGTTGGGTCCGGCGCGAAGTTTGTCCA
GAATTACATTGACGAGCAAGAGAGGAAAAAGTGA
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