mRNA_P-littoralis_Contig150.26.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig150.26.1
Unique NamemRNA_P-littoralis_Contig150.26.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig150.26.1 vs. uniprot
Match: A0A6H5LA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA08_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.020e-38
Identity = 77/164 (46.95%), Postives = 95/164 (57.93%), Query Frame = 2 
Query:  500 HGHLCEKDYVYYACNQVPEQGADGIRRWVHLQAGSPVEKATIWWESAERRKDSCVTPDFVPSSKCLCRRAQCFQTQWTQHLRTENKEETRK-CNICADR--KSGHWHHPGGMLCALSAWFKSGRASTDFF*RSGAELTTESDICNRCYMEAYNNSR*LPADRKP 982
            HG      YV +AC    +       +WVHLQ    V +A  WW S +R +DSCV  D+ PSS C+C R QCF  Q  + L     EE +K C IC  R     HWHHPGGML  L++WF+SGR+S D F  SG +LT  SDICNRC+ME YNN   +P D +P
Sbjct:  136 HGVFVGGVYVCHACGLESD-------KWVHLQPDK-VGEAREWWASGQRWEDSCVAEDYEPSSLCICSRRQCFFQQHKRWLEARTVEEKKKTCAICKMRGGHKNHWHHPGGMLIVLTSWFRSGRSSVDAFLNSGEDLTLLSDICNRCFMEGYNNKARIPPDARP 291
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BLAST of mRNA_P-littoralis_Contig150.26.1 vs. uniprot
Match: A0A6H5JBV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 7.300e-19
Identity = 55/137 (40.15%), Postives = 83/137 (60.58%), Query Frame = 2 
Query:  824 MLCALSAWFKSGRASTDFF*RSGAELTTESDICNRCYMEAYNNSR*LPADRKPNMSALLLTLELQSMAAVRVRPGAIVTQQTMTALLRVLKEGKEVSVEDAMTTLISKRKDSGMAV-----EDLRNLRTPAVELIKS 1219
            ML  L++WF+SGR+S D F  SG +LT  SDICNRC+ME YNN   +P D +P    LL    L+  AA +    A    + M ++LR+L+E   V+VEDA+  + +KR++ G++V     +  + LR  AV+++ S
Sbjct:    1 MLIVLTSWFRSGRSSVDAFLNSGEDLTLLSDICNRCFMEGYNNKARIPPDARPTTKELLE--HLRPRAAEKKHQAAAAFHEAMLSVLRILQESVPVAVEDAIEIVAAKRRECGLSVPVEGVQKDKGLRQIAVDILTS 135
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig150.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LA08_9PHAE1.020e-3846.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV2_9PHAE7.300e-1940.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig150contigP-littoralis_Contig150:106866..109754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1515
Hectar predicted targeting categoryother localisation
Exons4
Cds size759
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig150.26.1prot_P-littoralis_Contig150.26.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig150 107385..109109 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789717.3806481-UTR-P-littoralis_Contig150:106865..1069881680789717.3806481-UTR-P-littoralis_Contig150:106865..106988Pylaiella littoralis U1_48UTRP-littoralis_Contig150 106866..106988 +
1680789717.3903832-UTR-P-littoralis_Contig150:107383..1073841680789717.3903832-UTR-P-littoralis_Contig150:107383..107384Pylaiella littoralis U1_48UTRP-littoralis_Contig150 107384..107384 +
1680789717.4225762-UTR-P-littoralis_Contig150:109109..1094911680789717.4225762-UTR-P-littoralis_Contig150:109109..109491Pylaiella littoralis U1_48UTRP-littoralis_Contig150 109110..109491 +
1680789717.4334188-UTR-P-littoralis_Contig150:109504..1097541680789717.4334188-UTR-P-littoralis_Contig150:109504..109754Pylaiella littoralis U1_48UTRP-littoralis_Contig150 109505..109754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789717.4019606-CDS-P-littoralis_Contig150:107384..1074841680789717.4019606-CDS-P-littoralis_Contig150:107384..107484Pylaiella littoralis U1_48CDSP-littoralis_Contig150 107385..107484 +
1680789717.4122453-CDS-P-littoralis_Contig150:108450..1091091680789717.4122453-CDS-P-littoralis_Contig150:108450..109109Pylaiella littoralis U1_48CDSP-littoralis_Contig150 108451..109109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig150.26.1

>prot_P-littoralis_Contig150.26.1 ID=prot_P-littoralis_Contig150.26.1|Name=mRNA_P-littoralis_Contig150.26.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=253bp
MDAGDGDMPSGSEECSSGSGSIGNSSLGRPQSADEEEGRMGERARPLESE
IRAASAPITEGGRATRTSLRSRWVSSARNIASGQTRRRSASPTLRSEGRG
GVDAPNAVSAKKRRGPPTPCGQQGVHGHLCEKDYVYYACNQVPEQGADGI
RRWVHLQAGSPVEKATIWWESAERRKDSCVTPDFVPSSKCLCRRAQCFQT
QWTQHLRTENKEETRKCNICADRKSGHWHHPGGMLCALSAWFKSGRASTD
FF*
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mRNA from alignment at P-littoralis_Contig150:106866..109754+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig150.26.1 ID=mRNA_P-littoralis_Contig150.26.1|Name=mRNA_P-littoralis_Contig150.26.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2889bp|location=Sequence derived from alignment at P-littoralis_Contig150:106866..109754+ (Pylaiella littoralis U1_48)
CACATCAAAATATATTAAAAAAACATATGAAAATTAGAGCAGGTTCATGA
CAGGGTGGGAAGAAGGGCTACAACTCGGGCCAGCGGGCTCAAATCCGCGC
AGAACTTGAAGGGCACCTACCAGGTGAGTGAGCAGTCACTGGTCACGTTT
ATTTCGCTTGACTCGGTCCACGTCAATTACACACAGTGGTCAAATAATAG
ACCATGCCCACAGACGGCAGTTTCGCCGCACTCTCGCAGCACACAGCGAA
CACACAAGCACACACACCTAACCCGAACCAGCAACCTGCAACAAGCATCC
TGCTCAGGACTACGCCTAGGGTAGATCTCATCCTGTAATGGGAAATCTAT
GCGACGGTTCAACTGTGCTAGCTGTTCGTCGCAAGGGTGTGAAACACGCC
GTTTACAGCAGTATCAGCAGCCAGCAGCTGCACTTCACGCTGGGCTCACT
CTGGTGCACTCGTCACTGCTGCTGCTGTGCCGTCTGGCGCTGTCGTTTGG
ACTTCACCATACACACAGGATGGACGCAGGGGATGGGGACATGCCGTCGG
GCAGTGAAGAATGCAGTTCGGGATCAGGAAGTATCGGCAACTCTTCTCTG
GGCCGACCGCAATCAGCAGGTGCGGTGTGTTTTGTTCTCACTGGCTTTCG
AATACACCTGGTGCTGGTATGTATAACAGGTACGAAGTAAACACCAGACA
AACAGCCATTACAATGAAGGGGCCCTGTTCAATGTATTCCAACATTGCTG
AATTCTTGAATGCTGCAAAGAGCACCCAAAACGTCACGAAGCAGGGCCAT
CAGGCCAGTAGAATTGGGTTGGGGGCCAAAACAACGGCTGGAAGGTGTTA
GTTGGGGCGTTATTGCGACAAAAATGTTGTGATCCAGAACTCCGTATTAA
TTTTGCGAAATCTAAATCCAAGATGATAAGCTCCCCTTCTCTAAATTCGA
GACAAAACAGTGAATACGAGAGGCGCTCGAATAAGACCTGTGGTGTGAAT
TAACGATCTTTCCAATGATATTGGTAGGGGACATCACGTAGAAGCGACAT
ATGCGTTGGCTAGCTCAAATCTTCTGCCGGGGCTATTCTATCGGTGGTTG
AAAAAATGTTTTATGTACAATAGCAGTCGGGATTCTGTCCGAATTTTGGC
CTGAAATCAAACACCTTGCATGATCTTCCACTGCTGTACTCAACCCCATG
GGCCCCAATTTCCTGAACTTGGGGCGTATGGTTGAAGGATACCACCCTCG
ATCGCTGCTTCTCCCTGCTGATTGAATGACCCCACCGCAAAACAAACGCC
CTGCCGTCGGTAGGCAAGGAGTAGAGGTCCCACACTTCCAGGTTTCTGTT
TGATACGTGCTCGATCGAGAAAAAAGACGAAATTTTGGTGTTCTCGGGTG
TCTTTTGAGAATAGCTGTATTTTTTTTTCTCGGCCTCAAACATTCTGTTG
TCATCTCCAGCTTCAAGCCTGTGGTGTTGGCATGCATGCTGGAAAGGACC
GTGTATTTGAGCTTCGCGATACTGCGAATATGTAGAAAGTTCGCTCTGAT
CATCGAAGACGCGCGTTGTCCAACCATCGGTGCAGATGAAGAGGAGGGTC
GCATGGGCGAACGCGCTAGACCTTTGGAGTCAGAGATACGTGCGGCGAGT
GCGCCGATTACGGAAGGGGGGCGTGCCACCCGAACCAGCCTTCGCTCGCG
CTGGGTGAGTTCTGCGCGTAACATCGCCTCCGGACAGACGCGCCGGCGCT
CCGCGAGCCCGACTCTCAGGTCTGAGGGCCGCGGCGGTGTCGACGCACCG
AATGCTGTGTCTGCTAAAAAGCGCCGGGGGCCTCCAACGCCATGCGGGCA
ACAAGGCGTACACGGCCACCTCTGCGAGAAGGACTACGTGTACTACGCAT
GCAATCAAGTGCCAGAACAGGGTGCAGATGGTATCAGGAGATGGGTTCAT
CTTCAGGCAGGCAGCCCCGTAGAAAAGGCGACGATCTGGTGGGAATCCGC
GGAGAGGCGAAAAGATAGTTGCGTCACACCCGACTTTGTGCCGAGCTCGA
AATGCCTTTGCAGAAGAGCTCAGTGCTTCCAAACGCAGTGGACGCAGCAC
CTGAGGACCGAGAACAAGGAGGAGACGAGGAAGTGCAACATCTGTGCAGA
TAGAAAATCAGGGCATTGGCATCATCCCGGCGGGATGCTTTGCGCATTGT
CCGCGTGGTTCAAGTCGGGAAGAGCAAGTACGGACTTTTTCTGACGCAGT
GGCGCAGAGTTGACAACAGAGAGCGACATCTGCAACCGTTGCTACATGGA
AGCATACAATAATTCACGTTAGCTTCCAGCTGACAGGAAGCCGAACATGA
GTGCTCTGCTGTTGACTCTGGAGTTGCAGTCGATGGCTGCGGTTCGAGTG
CGGCCCGGCGCTATCGTAACACAACAGACGATGACTGCTTTGCTACGAGT
GCTGAAGGAGGGGAAGGAGGTGTCGGTGGAAGACGCGATGACAACTCTGA
TTTCAAAACGCAAGGATTCCGGAATGGCCGTTGAGGACTTGCGGAATCTG
CGGACTCCTGCGGTCGAGCTTATTAAGAGTAATTCATGATGCTATGATGC
TCCCCGAAACTGGCCAATCAACAGCCGCAGCTGTGGAAGTTATTTATTTA
TTTTTTCTTCCTCGTTCAATCTGGTATGATACGATATGCCTTTACCATTG
CATATCATACAAACATGCAGACGTGAGAGGTTCACAGAAACAAAAAAATC
CTAGATCCGAAAAGATATCGCCACACCGTATGACACGTGCACAGCAGTAT
TTCAATATGTCATCATCAGAGGGGGCAAACAAATCAGAGGGAGACATTTG
AGTTGGGAAGGGGCAGACTCGAAGACTTGTGGAACTTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig150:106866..109754+

>mRNA_P-littoralis_Contig150.26.1 ID=mRNA_P-littoralis_Contig150.26.1|Name=mRNA_P-littoralis_Contig150.26.1|organism=Pylaiella littoralis U1_48|type=CDS|length=759bp|location=Sequence derived from alignment at P-littoralis_Contig150:106866..109754+ (Pylaiella littoralis U1_48)
ATGGACGCAGGGGATGGGGACATGCCGTCGGGCAGTGAAGAATGCAGTTC
GGGATCAGGAAGTATCGGCAACTCTTCTCTGGGCCGACCGCAATCAGCAG
ATGAAGAGGAGGGTCGCATGGGCGAACGCGCTAGACCTTTGGAGTCAGAG
ATACGTGCGGCGAGTGCGCCGATTACGGAAGGGGGGCGTGCCACCCGAAC
CAGCCTTCGCTCGCGCTGGGTGAGTTCTGCGCGTAACATCGCCTCCGGAC
AGACGCGCCGGCGCTCCGCGAGCCCGACTCTCAGGTCTGAGGGCCGCGGC
GGTGTCGACGCACCGAATGCTGTGTCTGCTAAAAAGCGCCGGGGGCCTCC
AACGCCATGCGGGCAACAAGGCGTACACGGCCACCTCTGCGAGAAGGACT
ACGTGTACTACGCATGCAATCAAGTGCCAGAACAGGGTGCAGATGGTATC
AGGAGATGGGTTCATCTTCAGGCAGGCAGCCCCGTAGAAAAGGCGACGAT
CTGGTGGGAATCCGCGGAGAGGCGAAAAGATAGTTGCGTCACACCCGACT
TTGTGCCGAGCTCGAAATGCCTTTGCAGAAGAGCTCAGTGCTTCCAAACG
CAGTGGACGCAGCACCTGAGGACCGAGAACAAGGAGGAGACGAGGAAGTG
CAACATCTGTGCAGATAGAAAATCAGGGCATTGGCATCATCCCGGCGGGA
TGCTTTGCGCATTGTCCGCGTGGTTCAAGTCGGGAAGAGCAAGTACGGAC
TTTTTCTGA
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