mRNA_P-littoralis_Contig15.84.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.84.1
Unique NamemRNA_P-littoralis_Contig15.84.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.84.1 vs. uniprot
Match: Q8QKW1_ESV1K (EsV-1-43 n=2 Tax=root TaxID=1 RepID=Q8QKW1_ESV1K)

HSP 1 Score: 259 bits (663), Expect = 2.880e-86
Identity = 127/176 (72.16%), Postives = 152/176 (86.36%), Query Frame = 1 
Query:    1 MLRHAGTRVFTGGARGALYGITGGFLLGAIGNVFSDGLSTIDVVTWKDRAGKTKKFTHLDVVESFDIYKDLLTLHGAREVDTEAFDDACRHIQSVVFLYKRFLAEGE--ASMMESRRVTVYSIMATKSMNALLVSCRAKNYPESVRVEEAMMHIHLGFEEIINGVRHVSKDILPEL 522
            M ++A ++ F GGARGA++GI GGF+LGA+GNVF+DGLST+DVV WKDR G TKKF  L+V+ESFDIYKDLL +H ARE D EAF+DACRHIQSV +LYKRFL +GE  AS+M+ R++T YSIMATKSMNALL+SCRAKNYPES  VE++MM +HL FEEIINGVRHVSKDILPE+
Sbjct:    1 MFKNAASKAFGGGARGAMFGILGGFVLGAVGNVFADGLSTVDVVYWKDRRGTTKKFADLEVLESFDIYKDLLVIHSARECDMEAFNDACRHIQSVAYLYKRFLDKGEDKASIMDCRKITNYSIMATKSMNALLISCRAKNYPESSDVEKSMMQLHLTFEEIINGVRHVSKDILPEI 176
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BLAST of mRNA_P-littoralis_Contig15.84.1 vs. uniprot
Match: A0A6H5KJD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD3_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 5.250e-42
Identity = 78/114 (68.42%), Postives = 94/114 (82.46%), Query Frame = 1 
Query:  151 GKTKKFTHLDVVESFDIYKDLLTLHGAREVDTEAFDDACRHIQSVVFLYKRFLAEGE--ASMMESRRVTVYSIMATKSMNALLVSCRAKNYPESVRVEEAMMHIHLGFEEIING 486
            G+ +KF  L+V+ESFDIYKDLL LH ARE D EAF DACRHIQSV++LY RFL +     S+M+S ++T YSIMATKSMNALL+SCRAKNYP+S  VE++MMHIHL FE+IING
Sbjct:  155 GQNQKFADLEVLESFDIYKDLLELHSARECDEEAFCDACRHIQSVIYLYNRFLVDKTRTVSIMKSHKITNYSIMATKSMNALLISCRAKNYPQSSDVEKSMMHIHLTFEDIING 268
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QKW1_ESV1K2.880e-8672.16EsV-1-43 n=2 Tax=root TaxID=1 RepID=Q8QKW1_ESV1K[more]
A0A6H5KJD3_9PHAE5.250e-4268.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:192164..192688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size525
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-43
Ec32 orthologEc-06_006360.1
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.9918249-CDS-P-littoralis_Contig15:192163..1926881680789711.9918249-CDS-P-littoralis_Contig15:192163..192688Pylaiella littoralis U1_48CDSP-littoralis_Contig15 192164..192688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.84.1prot_P-littoralis_Contig15.84.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 192164..192688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.84.1

>prot_P-littoralis_Contig15.84.1 ID=prot_P-littoralis_Contig15.84.1|Name=mRNA_P-littoralis_Contig15.84.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp
MLRHAGTRVFTGGARGALYGITGGFLLGAIGNVFSDGLSTIDVVTWKDRA
GKTKKFTHLDVVESFDIYKDLLTLHGAREVDTEAFDDACRHIQSVVFLYK
RFLAEGEASMMESRRVTVYSIMATKSMNALLVSCRAKNYPESVRVEEAMM
HIHLGFEEIINGVRHVSKDILPEL*
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mRNA from alignment at P-littoralis_Contig15:192164..192688-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.84.1 ID=mRNA_P-littoralis_Contig15.84.1|Name=mRNA_P-littoralis_Contig15.84.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig15:192164..192688- (Pylaiella littoralis U1_48)
ATGTTGAGGCACGCGGGGACACGGGTGTTCACCGGGGGCGCGAGGGGGGC
TTTGTACGGCATCACAGGAGGATTTCTGCTGGGAGCAATTGGAAACGTGT
TTTCCGACGGCCTGTCCACGATCGATGTGGTGACGTGGAAGGACAGGGCG
GGAAAAACCAAGAAGTTCACACACCTAGACGTGGTGGAGTCATTCGACAT
ATACAAGGATCTGCTGACGCTACACGGCGCGAGGGAGGTCGATACGGAGG
CGTTCGATGACGCCTGCAGGCACATCCAGAGCGTTGTTTTCCTGTACAAG
CGATTCCTGGCCGAGGGTGAAGCGTCGATGATGGAGTCTCGGCGGGTAAC
GGTGTACTCCATCATGGCGACCAAAAGCATGAACGCGCTCTTGGTGTCGT
GCAGGGCGAAGAACTACCCGGAGAGCGTGCGCGTCGAGGAAGCCATGATG
CACATCCACCTCGGATTCGAAGAGATCATCAACGGAGTGAGGCATGTTTC
GAAGGACATCCTGCCCGAACTTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:192164..192688-

>mRNA_P-littoralis_Contig15.84.1 ID=mRNA_P-littoralis_Contig15.84.1|Name=mRNA_P-littoralis_Contig15.84.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig15:192164..192688- (Pylaiella littoralis U1_48)
ATGTTGAGGCACGCGGGGACACGGGTGTTCACCGGGGGCGCGAGGGGGGC
TTTGTACGGCATCACAGGAGGATTTCTGCTGGGAGCAATTGGAAACGTGT
TTTCCGACGGCCTGTCCACGATCGATGTGGTGACGTGGAAGGACAGGGCG
GGAAAAACCAAGAAGTTCACACACCTAGACGTGGTGGAGTCATTCGACAT
ATACAAGGATCTGCTGACGCTACACGGCGCGAGGGAGGTCGATACGGAGG
CGTTCGATGACGCCTGCAGGCACATCCAGAGCGTTGTTTTCCTGTACAAG
CGATTCCTGGCCGAGGGTGAAGCGTCGATGATGGAGTCTCGGCGGGTAAC
GGTGTACTCCATCATGGCGACCAAAAGCATGAACGCGCTCTTGGTGTCGT
GCAGGGCGAAGAACTACCCGGAGAGCGTGCGCGTCGAGGAAGCCATGATG
CACATCCACCTCGGATTCGAAGAGATCATCAACGGAGTGAGGCATGTTTC
GAAGGACATCCTGCCCGAACTTTGA
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