mRNA_P-littoralis_Contig15.82.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.82.1
Unique NamemRNA_P-littoralis_Contig15.82.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.82.1 vs. uniprot
Match: Q8QNL8_ESV1K (EsV-1-48 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNL8_ESV1K)

HSP 1 Score: 97.4 bits (241), Expect = 1.640e-24
Identity = 51/90 (56.67%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 MWSSKEVALISIATGFVFCFATICAQNKMKDYINQQVKAKT-QNPLIGMGLARR---QQEPEMVAADTGSESAAFRSAPPGSGTRWTPIS 258
            MWSSK+V  ISIATGFVFCFATI AQN M  Y+N +V  KT  NPLIGMGL  +   Q + + V     +  +   SAPPGSG RWTP+S
Sbjct:    1 MWSSKDVLFISIATGFVFCFATIYAQNAMTRYVNHRVAEKTASNPLIGMGLVSKPSQQHQQQNVLVKDHARVSEIHSAPPGSGARWTPLS 90
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BLAST of mRNA_P-littoralis_Contig15.82.1 vs. uniprot
Match: D8LP81_ECTSI (EsV-1-48 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP81_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 9.160e-24
Identity = 52/91 (57.14%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 MWSSKEVALISIATGFVFCFATICAQNKMKDYINQQVKAKTQ-NPLIGMGL----ARRQQEPEMVAADTGSESAAFRSAPPGSGTRWTPIS 258
            MWSSKEV  ISIATGFVFCFATI AQN M  Y+N  V  KT  NPLIGMGL    +++Q+  + V     +  A   S PPGSG RWTP+S
Sbjct:    1 MWSSKEVLFISIATGFVFCFATIYAQNAMSRYVNHCVAEKTAANPLIGMGLVSKPSQQQRVQQNVLVSDHASVADIHSPPPGSGARWTPLS 91
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNL8_ESV1K1.640e-2456.67EsV-1-48 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP81_ECTSI9.160e-2457.14EsV-1-48 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:191241..191528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size288
Hectar predicted targeting categorysignal peptide
Exons1
Cds size288
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.9269092-CDS-P-littoralis_Contig15:191240..1915281680789711.9269092-CDS-P-littoralis_Contig15:191240..191528Pylaiella littoralis U1_48CDSP-littoralis_Contig15 191241..191528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.82.1prot_P-littoralis_Contig15.82.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 191241..191528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.82.1

>prot_P-littoralis_Contig15.82.1 ID=prot_P-littoralis_Contig15.82.1|Name=mRNA_P-littoralis_Contig15.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
MWSSKEVALISIATGFVFCFATICAQNKMKDYINQQVKAKTQNPLIGMGL
ARRQQEPEMVAADTGSESAAFRSAPPGSGTRWTPISDYGRTRLFV*
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mRNA from alignment at P-littoralis_Contig15:191241..191528-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.82.1 ID=mRNA_P-littoralis_Contig15.82.1|Name=mRNA_P-littoralis_Contig15.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig15:191241..191528- (Pylaiella littoralis U1_48)
ATGTGGTCTTCGAAAGAAGTCGCCCTGATTTCAATCGCAACGGGGTTCGT
CTTCTGTTTCGCAACGATATGCGCGCAAAACAAGATGAAGGACTACATCA
ACCAGCAAGTGAAGGCGAAAACGCAGAACCCTCTCATCGGCATGGGTCTG
GCGCGGAGGCAGCAAGAGCCCGAAATGGTCGCGGCCGACACCGGAAGTGA
AAGTGCAGCGTTCCGCAGCGCACCACCTGGTTCGGGGACGCGGTGGACAC
CGATTTCTGACTATGGAAGAACGAGGCTCTTTGTGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:191241..191528-

>mRNA_P-littoralis_Contig15.82.1 ID=mRNA_P-littoralis_Contig15.82.1|Name=mRNA_P-littoralis_Contig15.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig15:191241..191528- (Pylaiella littoralis U1_48)
ATGTGGTCTTCGAAAGAAGTCGCCCTGATTTCAATCGCAACGGGGTTCGT
CTTCTGTTTCGCAACGATATGCGCGCAAAACAAGATGAAGGACTACATCA
ACCAGCAAGTGAAGGCGAAAACGCAGAACCCTCTCATCGGCATGGGTCTG
GCGCGGAGGCAGCAAGAGCCCGAAATGGTCGCGGCCGACACCGGAAGTGA
AAGTGCAGCGTTCCGCAGCGCACCACCTGGTTCGGGGACGCGGTGGACAC
CGATTTCTGACTATGGAAGAACGAGGCTCTTTGTGTGA
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