mRNA_P-littoralis_Contig15.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.71.1
Unique NamemRNA_P-littoralis_Contig15.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.71.1 vs. uniprot
Match: Q8QNK8_ESV1K (EsV-1-63 n=2 Tax=root TaxID=1 RepID=Q8QNK8_ESV1K)

HSP 1 Score: 196 bits (497), Expect = 1.720e-60
Identity = 106/192 (55.21%), Postives = 135/192 (70.31%), Query Frame = 1 
Query:    1 TQTPLPMPVRLAPILRAPDREEARSSMHATQAMPPRGPAPGTDAKPVADLTMYVNLSACRHSVDLVRDMRDVHRVPCTVIDISSGANIPSWLKGTPSIVIGTNVYCGDTAFQLAESITVSREQEE-LP--LSKGASSFADIVSGKGGKRSE-KGCGLSDAFCQPTQISEEEAEQKYSSSVDDAMTRLLQGRG 564
            T TP+P PVRLAPI+RAP+RE A ++    Q +  + P       P    TMYVN + CRHSVDL++++RDVHR+PC V+D++SG NIP+WLKGTPSIV+G +VYCGDTAF  A S+ +   Q +  P       SSF  +VSGKGGK+++ KGCGLS AF  P  ISE +AE+KYS SVDDAM RL+Q RG
Sbjct:   12 TNTPIPAPVRLAPIIRAPERE-ANNTQRRGQHIQRQAPL-----MPEPMFTMYVNSTECRHSVDLMKEVRDVHRLPCKVVDVASGVNIPTWLKGTPSIVVGKDVYCGDTAFDFAASVGLEHHQSQGCPPHAFDQTSSFQAMVSGKGGKKNDGKGCGLSKAFSPPVSISEADAEKKYSGSVDDAMARLMQSRG 197
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BLAST of mRNA_P-littoralis_Contig15.71.1 vs. uniprot
Match: Q6XLZ4_9PHYC (FirrV-1-B42 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLZ4_9PHYC)

HSP 1 Score: 65.1 bits (157), Expect = 3.230e-10
Identity = 48/145 (33.10%), Postives = 76/145 (52.41%), Query Frame = 1 
Query:  139 VADLTMYVNLSACRHSVDLVRDMRDV---HRVPCTVIDISSGANIPSWLKGTPSIVIGTNVYCGDTAFQLAESITVSREQEELPLSKGASSFADIVSGKGGKRSEKGCGLSDAFCQ-PTQISEEEAEQKYSSSVDDAMTRLLQGR 561
            ++D+ +Y +   C++S +++    ++   HRV    ID+      P+WL GTPS+V G +VYCGD AF+  E++  S    E   SK  +    + S        KG GLS AF   P+ +S+++ E +   S +D M RLL  R
Sbjct:    1 MSDIKIYTHCKRCKYSREIMTLSAELGVEHRVQ--FIDLDKNPP-PTWLPGTPSLVCGNDVYCGDAAFKYVENMQRSTAAAEP--SKAMTGQPSVAS--------KGLGLSQAFAPVPSAVSDDD-ESRPMISTNDMMNRLLAER 131
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BLAST of mRNA_P-littoralis_Contig15.71.1 vs. uniprot
Match: B5LWE0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE0_9PHYC)

HSP 1 Score: 55.8 bits (133), Expect = 9.060e-7
Identity = 43/141 (30.50%), Postives = 65/141 (46.10%), Query Frame = 1 
Query:  154 MYVNLSACRHS---VDLVRDMRDVHRVPCTVIDISSGANIPSWLKGTPSIVIGTNVYCGDTAFQLAESIT-VSREQEELPLSKGASSFADIVSGKGGKR-SEKGCGLSDAFCQPTQISEEEAEQKYSSSVDDAMTRLLQGR 561
            +Y + S C  S   VDL + ++++       ID       P WL GTP++V G +VYCGD AF   E++  +    +E P              +  KR  + G  L+ AF  P  I  +E+   +  S DD + R+L GR
Sbjct:   10 IYTHCSRCPFSKEIVDLAKSLQNISMFDLGQIDP------PPWLPGTPTVVDGADVYCGDAAFSFLETLEDIDDNSDENP--------------RPSKRPGDYGQALAQAFKSPEPIDVDESS--FDVSTDDMLERILAGR 128
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QNK8_ESV1K1.720e-6055.21EsV-1-63 n=2 Tax=root TaxID=1 RepID=Q8QNK8_ESV1K[more]
Q6XLZ4_9PHYC3.230e-1033.10FirrV-1-B42 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWE0_9PHYC9.060e-730.50Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:177318..177884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size567
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-63
Ec32 orthologEc-06_006160.1
Cds size549
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.5769904-UTR-P-littoralis_Contig15:177317..1773351680789711.5769904-UTR-P-littoralis_Contig15:177317..177335Pylaiella littoralis U1_48UTRP-littoralis_Contig15 177318..177335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.5878177-CDS-P-littoralis_Contig15:177335..1778841680789711.5878177-CDS-P-littoralis_Contig15:177335..177884Pylaiella littoralis U1_48CDSP-littoralis_Contig15 177336..177884 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.71.1prot_P-littoralis_Contig15.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 177336..177884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.71.1

>prot_P-littoralis_Contig15.71.1 ID=prot_P-littoralis_Contig15.71.1|Name=mRNA_P-littoralis_Contig15.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=183bp
MPVRLAPILRAPDREEARSSMHATQAMPPRGPAPGTDAKPVADLTMYVNL
SACRHSVDLVRDMRDVHRVPCTVIDISSGANIPSWLKGTPSIVIGTNVYC
GDTAFQLAESITVSREQEELPLSKGASSFADIVSGKGGKRSEKGCGLSDA
FCQPTQISEEEAEQKYSSSVDDAMTRLLQGRG*
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mRNA from alignment at P-littoralis_Contig15:177318..177884+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.71.1 ID=mRNA_P-littoralis_Contig15.71.1|Name=mRNA_P-littoralis_Contig15.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=567bp|location=Sequence derived from alignment at P-littoralis_Contig15:177318..177884+ (Pylaiella littoralis U1_48)
ACACAAACACCGCTCCCGATGCCGGTGAGGCTGGCACCGATCCTCAGAGC
TCCCGACAGGGAAGAGGCAAGATCTTCGATGCACGCGACCCAAGCGATGC
CACCGAGGGGACCAGCACCCGGCACCGACGCCAAACCCGTTGCCGACCTC
ACGATGTACGTGAACCTGTCCGCGTGCCGACACTCGGTCGACCTGGTGAG
AGACATGCGTGACGTGCACCGTGTTCCATGCACAGTGATCGATATATCGA
GTGGTGCCAACATACCCTCGTGGCTCAAGGGAACGCCGAGCATCGTCATC
GGCACAAACGTGTACTGTGGTGACACGGCGTTCCAGCTCGCGGAGTCTAT
TACTGTGAGCCGAGAGCAGGAAGAGCTTCCTCTCTCCAAGGGCGCGTCTT
CGTTTGCGGACATCGTGTCCGGAAAGGGTGGAAAAAGAAGTGAAAAGGGG
TGTGGCTTGTCAGATGCGTTTTGTCAGCCCACGCAAATATCGGAAGAAGA
AGCAGAGCAGAAGTACTCGTCGTCGGTGGACGACGCCATGACTAGACTCC
TGCAAGGTCGGGGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:177318..177884+

>mRNA_P-littoralis_Contig15.71.1 ID=mRNA_P-littoralis_Contig15.71.1|Name=mRNA_P-littoralis_Contig15.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=549bp|location=Sequence derived from alignment at P-littoralis_Contig15:177318..177884+ (Pylaiella littoralis U1_48)
ATGCCGGTGAGGCTGGCACCGATCCTCAGAGCTCCCGACAGGGAAGAGGC
AAGATCTTCGATGCACGCGACCCAAGCGATGCCACCGAGGGGACCAGCAC
CCGGCACCGACGCCAAACCCGTTGCCGACCTCACGATGTACGTGAACCTG
TCCGCGTGCCGACACTCGGTCGACCTGGTGAGAGACATGCGTGACGTGCA
CCGTGTTCCATGCACAGTGATCGATATATCGAGTGGTGCCAACATACCCT
CGTGGCTCAAGGGAACGCCGAGCATCGTCATCGGCACAAACGTGTACTGT
GGTGACACGGCGTTCCAGCTCGCGGAGTCTATTACTGTGAGCCGAGAGCA
GGAAGAGCTTCCTCTCTCCAAGGGCGCGTCTTCGTTTGCGGACATCGTGT
CCGGAAAGGGTGGAAAAAGAAGTGAAAAGGGGTGTGGCTTGTCAGATGCG
TTTTGTCAGCCCACGCAAATATCGGAAGAAGAAGCAGAGCAGAAGTACTC
GTCGTCGGTGGACGACGCCATGACTAGACTCCTGCAAGGTCGGGGGTGA
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