mRNA_P-littoralis_Contig15.67.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.67.1
Unique NamemRNA_P-littoralis_Contig15.67.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.67.1 vs. uniprot
Match: Q8QNK5_ESV1K (EsV-1-68 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNK5_ESV1K)

HSP 1 Score: 540 bits (1392), Expect = 1.470e-183
Identity = 304/536 (56.72%), Postives = 381/536 (71.08%), Query Frame = 1 
Query:    1 MRMVNAPYKPKEETLKDMPGPQDVFGMGMSSRIKEIEADFATTTVPVTSSKQFDRPVERIATGNGSAGGFHIGAGKRHHKFILNEQPPIESRGGPRGAFAGASGSRVKGDYETVTQRSSLQHESIGPPVAAGVPQSSAPHPSFEISPSHLETYSLDKQNLSKSARANVQRPAGPENRRFAPAHDENIQVLHTSLVTGGERFATGASGNREVRIHVPLNNDPLVTFDERVVPNFKISKASDFKGQQTVARQMMIPEMSQNVSALRKDTRPPIPATTDDTRGRFSLQTDKVTSGSAVRGANSLPIHVPVDAFRAAADRKGAVAEKTALASRGAAASHLVHGSNSASTSSSLVRTTNKLAEGVGMPFIRGAGSKRKTNLPSGHEATDTHLSELEVGGLLGGVNKFSKLKKKPADASSGETIHS-ETRSVVFKKSERPPLLAAP----TPRESSRADKLSTLSTLKEEGVVRREVRTNPVR--RKNGGTYANDAPGSA-----QTSARKLGDVLNGRIGSSPALKKMLSNPYSLPAASRI 1572
            MRM NAPYKPKEE + ++PGPQD+FG  M SR+K++E+DFA +TVP+TS KQFDRPVE+I+TGNGSA GFHIG+G+R HKF+LN+QP IES GGPRGAF+GASGS +KGDY TVTQRSSL H+S+GPPVA GVPQSSAP PSFEI+ SHLE Y +D  +L+KS+RA VQ     +   F  AHDE ++VLHTSLVTGGERFATGASG R+ R+HVPLNNDP+ T+++RVVPNFKI+KASD+  QQ  ARQMMIPEMSQNVSALRKD +PP+  +T +     +L+T  + SG+AVRG   LP+    DAFR  ADRK  VAE  A  +RGA+ SH V   NSA+ S S+ RTT  ++E VG PFIRGAG+K  +NL   HE TDTHLSE+E  G+L G N+ S      + +   E + S + R  +FKK+ER  +L AP    T R  +    ++ + + +  G    E   N +R  + N   ++ D   +A      T  RKLGDVLNGR+ SS ALKK+L NPYSLPAASR+
Sbjct:  156 MRMANAPYKPKEEIVSEIPGPQDLFGRTMISRVKQMESDFAASTVPITSEKQFDRPVEQISTGNGSAVGFHIGSGRRFHKFLLNDQPTIESDGGPRGAFSGASGSHMKGDYRTVTQRSSLNHKSVGPPVAVGVPQSSAPVPSFEITGSHLENYRMD-DHLAKSSRAPVQASTSTDAVSFRGAHDEKLEVLHTSLVTGGERFATGASGTRDTRVHVPLNNDPVATYEQRVVPNFKIAKASDYHDQQVTARQMMIPEMSQNVSALRKDRKPPVSGSTTNKSTSLALETRGIKSGAAVRGPCFLPVKNEADAFRVPADRKEVVAENAARVARGASTSHAV--GNSAA-SPSIFRTTQSVSELVGTPFIRGAGTKHASNLEPIHEDTDTHLSEMEHSGILRGSNRVSTSTVHSSVSLPQEKLGSTQERGDIFKKTERDAVLVAPGLLGTNRTGAANRHVAGMISRRGLGDEEEEEEVNVIRSGKINCVRFSKDNKQAAGMSKDSTKNRKLGDVLNGRMRSSSALKKLLENPYSLPAASRL 687
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BLAST of mRNA_P-littoralis_Contig15.67.1 vs. uniprot
Match: D8LPA0_ECTSI (EsV-1-68 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPA0_ECTSI)

HSP 1 Score: 539 bits (1388), Expect = 4.150e-183
Identity = 302/537 (56.24%), Postives = 379/537 (70.58%), Query Frame = 1 
Query:    1 MRMVNAPYKPKEETLKDMPGPQDVFGMGMSSRIKEIEADFATTTVPVTSSKQFDRPVERIATGNGSAGGFHIGAGKRHHKFILNEQPPIESRGGPRGAFAGASGSRVKGDYETVTQRSSLQHESIGPPVAAGVPQSSAPHPSFEISPSHLETYSLDKQNLSKSARANVQRPAGPENRRFAPAHDENIQVLHTSLVTGGERFATGASGNREVRIHVPLNNDPLVTFDERVVPNFKISKASDFKGQQTVARQMMIPEMSQNVSALRKDTRPPIPATTDDTRGRFSLQTDKVTSGSAVRGANSLPIHVPVDAFRAAADRKGAVAEKTALASRGAAASHLVHGSNSASTSSSLVRTTNKLAEGVGMPFIRGAGSKRKTNLPSGHEATDTHLSELEVGGLLGGVNKFSKLKKKPADASSGETIHS-ETRSVVFKKSERPPLLAAPTPRESSR--ADKLSTLSTLKEEGV---------VRREVRTNPVRRKNGGTYANDAPGSAQTSARKLGDVLNGRIGSSPALKKMLSNPYSLPAASRIR 1575
            MRM NAPYKPKEE + ++PGPQD+FG  M SR+K++E+DFA +TVP+TS KQFDRPVE+I+TGNGSA GFHIG+G+R HKF+LN+QP IES GGPRGAF+GASGS VKGDY TVTQRSSL H+S+GPPVA GVPQSSAP PSF+I+ SHLE+Y +D  +L+KS++A VQ  A  +   F  AHDE ++VLHTSLVTGGERFATGASG R+ ++HVPLNNDP+ T+++RVVPNFKI+KASD+  QQ  ARQMMIPEMSQNVSALRKD +PP+   T +     +L+T  + SG+AVRG + LP+     AFR  ADRK  VAE  A  +RGAA SH V  S +   S S+ RTT  ++E VG PFIRGAG+K  +NL   HE TDTHLSE+E  G+L G NK S      + +   E + S + R  +FKK+ER  +L AP    ++R  A  L     +  +G+         V R  + N VR  +    A      + T  RKLG+VLN R+G+S ALKK+L NPYSLPAASR+R
Sbjct:  146 MRMANAPYKPKEEIVSEIPGPQDLFGRTMISRVKQMESDFAASTVPITSEKQFDRPVEQISTGNGSAIGFHIGSGRRFHKFLLNDQPTIESDGGPRGAFSGASGSHVKGDYRTVTQRSSLNHKSVGPPVAVGVPQSSAPVPSFKITGSHLESYRMD-DHLAKSSKAPVQASASTDAVLFRGAHDEKLEVLHTSLVTGGERFATGASGTRDTKVHVPLNNDPVATYEQRVVPNFKIAKASDYHDQQVTARQMMIPEMSQNVSALRKDRKPPVSGWTTNKSTSLALETGGIKSGAAVRGPSLLPVKNEAGAFRVPADRKEVVAENAARVARGAATSHAVGNSTA---SPSIFRTTQSVSELVGTPFIRGAGTKHASNLEPLHEDTDTHLSEMERSGILRGSNKVSTSTVHSSVSLPQERLGSKQQRGDIFKKTERDAVLVAPGLLGTNRTGAANLHVDGMISRKGLEGDEKGPVNVMRSGKINHVRFSSDNKQAAGVSKDS-TKTRKLGEVLNDRMGASSALKKLLKNPYSLPAASRLR 677
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.67.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNK5_ESV1K1.470e-18356.72EsV-1-68 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LPA0_ECTSI4.150e-18356.24EsV-1-68 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:169012..170601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1590
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-68
Ec32 orthologEc-06_006120.1
Cds size1590
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789711.4422054-CDS-P-littoralis_Contig15:169011..1706011680789711.4422054-CDS-P-littoralis_Contig15:169011..170601Pylaiella littoralis U1_48CDSP-littoralis_Contig15 169012..170601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.67.1prot_P-littoralis_Contig15.67.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 169012..170601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.67.1

>prot_P-littoralis_Contig15.67.1 ID=prot_P-littoralis_Contig15.67.1|Name=mRNA_P-littoralis_Contig15.67.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=530bp
MRMVNAPYKPKEETLKDMPGPQDVFGMGMSSRIKEIEADFATTTVPVTSS
KQFDRPVERIATGNGSAGGFHIGAGKRHHKFILNEQPPIESRGGPRGAFA
GASGSRVKGDYETVTQRSSLQHESIGPPVAAGVPQSSAPHPSFEISPSHL
ETYSLDKQNLSKSARANVQRPAGPENRRFAPAHDENIQVLHTSLVTGGER
FATGASGNREVRIHVPLNNDPLVTFDERVVPNFKISKASDFKGQQTVARQ
MMIPEMSQNVSALRKDTRPPIPATTDDTRGRFSLQTDKVTSGSAVRGANS
LPIHVPVDAFRAAADRKGAVAEKTALASRGAAASHLVHGSNSASTSSSLV
RTTNKLAEGVGMPFIRGAGSKRKTNLPSGHEATDTHLSELEVGGLLGGVN
KFSKLKKKPADASSGETIHSETRSVVFKKSERPPLLAAPTPRESSRADKL
STLSTLKEEGVVRREVRTNPVRRKNGGTYANDAPGSAQTSARKLGDVLNG
RIGSSPALKKMLSNPYSLPAASRIRVSAS*
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mRNA from alignment at P-littoralis_Contig15:169012..170601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.67.1 ID=mRNA_P-littoralis_Contig15.67.1|Name=mRNA_P-littoralis_Contig15.67.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1590bp|location=Sequence derived from alignment at P-littoralis_Contig15:169012..170601+ (Pylaiella littoralis U1_48)
ATGCGAATGGTTAACGCCCCGTACAAGCCGAAGGAAGAGACCTTGAAGGA
CATGCCGGGCCCCCAGGATGTTTTCGGGATGGGCATGAGTTCCCGGATCA
AGGAGATCGAAGCGGACTTTGCAACCACCACGGTTCCCGTGACTAGCAGC
AAACAGTTTGATCGTCCGGTGGAGCGGATCGCCACGGGAAACGGCTCGGC
CGGCGGGTTCCACATCGGAGCCGGAAAGCGGCACCACAAATTCATCTTGA
ATGAGCAGCCGCCGATCGAGTCACGCGGCGGCCCACGAGGGGCATTTGCC
GGTGCGTCGGGTTCCCGTGTCAAAGGCGACTACGAAACCGTCACACAGCG
TTCTTCGTTGCAACACGAGTCCATCGGACCTCCGGTTGCGGCGGGCGTCC
CACAGTCGTCGGCCCCCCACCCGTCCTTCGAGATCTCTCCTTCTCACCTC
GAGACATACAGCCTGGACAAGCAAAATTTGTCGAAGAGCGCCAGGGCCAA
CGTCCAGCGGCCGGCCGGTCCCGAGAATCGACGCTTCGCTCCTGCCCACG
ACGAAAACATCCAGGTGCTACACACGTCTCTCGTCACGGGAGGAGAGCGG
TTCGCAACGGGAGCGTCGGGTAACAGAGAGGTCAGGATCCACGTCCCGCT
GAACAACGACCCTCTTGTCACGTTCGACGAGCGCGTCGTTCCGAACTTTA
AGATATCGAAAGCGTCGGACTTCAAGGGTCAGCAAACCGTGGCGAGACAG
ATGATGATTCCCGAGATGTCTCAGAACGTGTCCGCGCTGCGGAAGGACAC
CCGACCTCCGATCCCGGCGACGACAGACGACACGAGGGGCAGGTTCTCTC
TGCAAACAGATAAGGTGACGTCGGGGAGCGCGGTTCGAGGTGCCAACTCG
TTACCTATCCATGTCCCCGTGGACGCTTTTCGCGCCGCCGCCGACAGAAA
GGGGGCCGTTGCCGAAAAGACGGCGCTCGCCTCGCGTGGGGCTGCCGCCT
CTCACCTGGTCCACGGGTCGAACTCGGCGTCAACCTCGTCCTCGCTCGTT
CGGACGACCAACAAGCTGGCGGAGGGTGTCGGCATGCCCTTCATCCGCGG
CGCGGGAAGCAAGCGCAAGACCAACCTTCCGTCCGGCCACGAAGCCACAG
ACACCCATCTCTCCGAGCTGGAGGTCGGCGGCCTGCTCGGCGGCGTCAAT
AAGTTTTCGAAACTCAAAAAGAAACCCGCGGACGCGTCTTCCGGCGAGAC
TATCCATTCGGAAACAAGGAGCGTCGTGTTCAAGAAGTCCGAACGACCTC
CACTGCTCGCCGCACCGACTCCACGGGAATCGTCCAGGGCGGACAAGCTC
TCCACGCTTTCCACCCTGAAAGAAGAGGGTGTGGTCCGGCGCGAGGTCCG
GACGAATCCGGTTCGTCGGAAAAACGGCGGAACGTACGCCAACGACGCGC
CCGGTTCAGCCCAGACGAGCGCTCGCAAGCTGGGCGACGTTCTCAACGGA
AGGATCGGATCTTCTCCTGCTCTGAAAAAGATGCTCAGCAATCCGTACTC
TTTGCCGGCGGCGTCTCGTATTCGTGTTTCGGCGTCGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:169012..170601+

>mRNA_P-littoralis_Contig15.67.1 ID=mRNA_P-littoralis_Contig15.67.1|Name=mRNA_P-littoralis_Contig15.67.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1590bp|location=Sequence derived from alignment at P-littoralis_Contig15:169012..170601+ (Pylaiella littoralis U1_48)
ATGCGAATGGTTAACGCCCCGTACAAGCCGAAGGAAGAGACCTTGAAGGA
CATGCCGGGCCCCCAGGATGTTTTCGGGATGGGCATGAGTTCCCGGATCA
AGGAGATCGAAGCGGACTTTGCAACCACCACGGTTCCCGTGACTAGCAGC
AAACAGTTTGATCGTCCGGTGGAGCGGATCGCCACGGGAAACGGCTCGGC
CGGCGGGTTCCACATCGGAGCCGGAAAGCGGCACCACAAATTCATCTTGA
ATGAGCAGCCGCCGATCGAGTCACGCGGCGGCCCACGAGGGGCATTTGCC
GGTGCGTCGGGTTCCCGTGTCAAAGGCGACTACGAAACCGTCACACAGCG
TTCTTCGTTGCAACACGAGTCCATCGGACCTCCGGTTGCGGCGGGCGTCC
CACAGTCGTCGGCCCCCCACCCGTCCTTCGAGATCTCTCCTTCTCACCTC
GAGACATACAGCCTGGACAAGCAAAATTTGTCGAAGAGCGCCAGGGCCAA
CGTCCAGCGGCCGGCCGGTCCCGAGAATCGACGCTTCGCTCCTGCCCACG
ACGAAAACATCCAGGTGCTACACACGTCTCTCGTCACGGGAGGAGAGCGG
TTCGCAACGGGAGCGTCGGGTAACAGAGAGGTCAGGATCCACGTCCCGCT
GAACAACGACCCTCTTGTCACGTTCGACGAGCGCGTCGTTCCGAACTTTA
AGATATCGAAAGCGTCGGACTTCAAGGGTCAGCAAACCGTGGCGAGACAG
ATGATGATTCCCGAGATGTCTCAGAACGTGTCCGCGCTGCGGAAGGACAC
CCGACCTCCGATCCCGGCGACGACAGACGACACGAGGGGCAGGTTCTCTC
TGCAAACAGATAAGGTGACGTCGGGGAGCGCGGTTCGAGGTGCCAACTCG
TTACCTATCCATGTCCCCGTGGACGCTTTTCGCGCCGCCGCCGACAGAAA
GGGGGCCGTTGCCGAAAAGACGGCGCTCGCCTCGCGTGGGGCTGCCGCCT
CTCACCTGGTCCACGGGTCGAACTCGGCGTCAACCTCGTCCTCGCTCGTT
CGGACGACCAACAAGCTGGCGGAGGGTGTCGGCATGCCCTTCATCCGCGG
CGCGGGAAGCAAGCGCAAGACCAACCTTCCGTCCGGCCACGAAGCCACAG
ACACCCATCTCTCCGAGCTGGAGGTCGGCGGCCTGCTCGGCGGCGTCAAT
AAGTTTTCGAAACTCAAAAAGAAACCCGCGGACGCGTCTTCCGGCGAGAC
TATCCATTCGGAAACAAGGAGCGTCGTGTTCAAGAAGTCCGAACGACCTC
CACTGCTCGCCGCACCGACTCCACGGGAATCGTCCAGGGCGGACAAGCTC
TCCACGCTTTCCACCCTGAAAGAAGAGGGTGTGGTCCGGCGCGAGGTCCG
GACGAATCCGGTTCGTCGGAAAAACGGCGGAACGTACGCCAACGACGCGC
CCGGTTCAGCCCAGACGAGCGCTCGCAAGCTGGGCGACGTTCTCAACGGA
AGGATCGGATCTTCTCCTGCTCTGAAAAAGATGCTCAGCAATCCGTACTC
TTTGCCGGCGGCGTCTCGTATTCGTGTTTCGGCGTCGTGA
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