mRNA_P-littoralis_Contig15.51.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.51.1
Unique NamemRNA_P-littoralis_Contig15.51.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.51.1 vs. uniprot
Match: Q8QNI2_ESV1K (EsV-1-95 n=2 Tax=root TaxID=1 RepID=Q8QNI2_ESV1K)

HSP 1 Score: 88.2 bits (217), Expect = 1.540e-21
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 MEGLGAVSSGVTLENGTSQNVGSSITLVSGRREWRLRVPSVKESSENMFVLEVKQGTTWYPAQEFVI 201
            MEG  +   GVTLENG S   G S+TLVSG R WRLRVPS++ESS+N+ +LEVK G TWYPAQ+FV+
Sbjct:    1 MEGGSSNGFGVTLENGMSTTGGDSMTLVSGGRIWRLRVPSIQESSDNILILEVKHGITWYPAQQFVV 67
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BLAST of mRNA_P-littoralis_Contig15.51.1 vs. uniprot
Match: B5LWB0_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWB0_9PHYC)

HSP 1 Score: 59.7 bits (143), Expect = 2.940e-10
Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:    1 MEGLGAVSSGVTLENGTSQNVGSSITLVSGRREWRLRVPSVKESSENMFVLEVKQGTTWYPAQEFVI 201
            M+G    ++GV+L +G+   VG SITL SG R WRLR+PS  ES +N+ V E K G  W  A  F I
Sbjct:    1 MDGAIFGNTGVSLLSGSGIVVGESITLFSGGRSWRLRLPSSSESEDNILVFEYKSGARWVQAAVFAI 67
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BLAST of mRNA_P-littoralis_Contig15.51.1 vs. uniprot
Match: Q6XLU2_9PHYC (FirrV-1-I4 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLU2_9PHYC)

HSP 1 Score: 57.8 bits (138), Expect = 1.610e-9
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    1 MEGLGAVSSGVTLENGTSQNVGSSITLVSGRREWRLRVPSVKESSENMFVLEVKQGTTWYPAQEFVI 201
            M+G  A ++GV+L +G+   V SSITL SG R WR R+PS  ES +N+ V+E K G  W  A  + +
Sbjct:    1 MDGTTAGTAGVSLLSGSRLLVESSITLFSGGRSWRFRLPSSSESEKNILVVEYKSGARWVQAGVYAV 67
[Close]
BLAST of mRNA_P-littoralis_Contig15.51.1 vs. uniprot
Match: Q6XM23_9PHYC (FirrV-1-B13 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM23_9PHYC)

HSP 1 Score: 55.5 bits (132), Expect = 1.320e-8
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    1 MEGLGAVSSGVTLENGTSQNVGSSITLVSGRREWRLRVPSVKESSENMFVLEVKQGTTWYPA 186
            M+G    ++GV+L +G+   V SSITL SG R WR R+PS  ES  N+ V+E K G  W  A
Sbjct:    1 MDGTSTGTAGVSLLSGSGLLVESSITLYSGGRSWRFRLPSSSESENNILVVEYKLGAQWVQA 62
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNI2_ESV1K1.540e-2164.18EsV-1-95 n=2 Tax=root TaxID=1 RepID=Q8QNI2_ESV1K[more]
B5LWB0_9PHYC2.940e-1047.76Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XLU2_9PHYC1.610e-944.78FirrV-1-I4 n=1 Tax=Feldmannia irregularis virus a ... [more]
Q6XM23_9PHYC1.320e-846.77FirrV-1-B13 n=1 Tax=Feldmannia irregularis virus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:140123..140341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size219
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-95
Ec32 orthologEc-06_005860.1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.83358-CDS-P-littoralis_Contig15:140122..1403411680789710.83358-CDS-P-littoralis_Contig15:140122..140341Pylaiella littoralis U1_48CDSP-littoralis_Contig15 140123..140341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.51.1prot_P-littoralis_Contig15.51.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 140123..140341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.51.1

>prot_P-littoralis_Contig15.51.1 ID=prot_P-littoralis_Contig15.51.1|Name=mRNA_P-littoralis_Contig15.51.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=73bp
MEGLGAVSSGVTLENGTSQNVGSSITLVSGRREWRLRVPSVKESSENMFV
LEVKQGTTWYPAQEFVIVDDVD*
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mRNA from alignment at P-littoralis_Contig15:140123..140341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.51.1 ID=mRNA_P-littoralis_Contig15.51.1|Name=mRNA_P-littoralis_Contig15.51.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig15:140123..140341+ (Pylaiella littoralis U1_48)
ATGGAAGGCTTGGGCGCGGTTTCTTCCGGTGTAACCCTGGAGAACGGGAC
ATCGCAAAACGTGGGCAGCTCCATCACCCTTGTTTCCGGGCGGAGAGAGT
GGAGGCTAAGGGTTCCGTCGGTGAAGGAGAGCAGCGAAAACATGTTCGTC
CTCGAGGTGAAACAGGGAACCACTTGGTACCCCGCTCAAGAGTTTGTGAT
CGTCGACGACGTCGATTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:140123..140341+

>mRNA_P-littoralis_Contig15.51.1 ID=mRNA_P-littoralis_Contig15.51.1|Name=mRNA_P-littoralis_Contig15.51.1|organism=Pylaiella littoralis U1_48|type=CDS|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig15:140123..140341+ (Pylaiella littoralis U1_48)
ATGGAAGGCTTGGGCGCGGTTTCTTCCGGTGTAACCCTGGAGAACGGGAC
ATCGCAAAACGTGGGCAGCTCCATCACCCTTGTTTCCGGGCGGAGAGAGT
GGAGGCTAAGGGTTCCGTCGGTGAAGGAGAGCAGCGAAAACATGTTCGTC
CTCGAGGTGAAACAGGGAACCACTTGGTACCCCGCTCAAGAGTTTGTGAT
CGTCGACGACGTCGATTAA
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