mRNA_P-littoralis_Contig15.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.47.1
Unique NamemRNA_P-littoralis_Contig15.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig15.47.1 vs. uniprot
Match: Q8QNH6_ESV1K (EsV-1-102 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNH6_ESV1K)

HSP 1 Score: 94.7 bits (234), Expect = 2.000e-23
Identity = 51/101 (50.50%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 MSKDSTTHAPLIPMSEIFMPGTGTDESEDHDHA---------GSNGHALSLIESEISHLTGVQATNNDEIKKRLTEIQALRESNLVVAGALGGLRKIKDKL 276
            M++D +THAPLIPMSE+F  G+ T+ES D              S  + L +IE E+  L  +Q +NN+EIKKRLTEIQ+ RE+NLVV GA+GGL+KI++K+
Sbjct:    1 MNEDVSTHAPLIPMSEMF--GSNTNESSDSRQPMGQQKSLQKASLAYVLEIIEKELGSLAKIQTSNNEEIKKRLTEIQSFRENNLVVVGAIGGLKKIREKI 99
[Close]
BLAST of mRNA_P-littoralis_Contig15.47.1 vs. uniprot
Match: D8LPD3_ECTSI (EsV-1-102 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPD3_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.330e-21
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 1 
Query:    1 MSKDSTTHAPLIPMSEIFMPGTGTDESEDH---------DHAGSNGHALSLIESEISHLTGVQATNNDEIKKRLTEIQALRESNLVVAGALGGLRKIKDKL 276
            M+ + +TH PLIPMSE+F  G+ T+E+ D              S  + L +IESE+  L  VQ +NN+EIKKRLTEIQ+ RESNLVV GA+ GL+KI++K+
Sbjct:    1 MNDNVSTHTPLIPMSEMF--GSNTNETSDSRQPMEQQKSSQRASLKYVLEIIESELDSLAKVQTSNNEEIKKRLTEIQSFRESNLVVVGAISGLKKIREKI 99
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNH6_ESV1K2.000e-2350.50EsV-1-102 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPD3_ECTSI1.330e-2149.50EsV-1-102 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:133875..134312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size279
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionEsV-1-102
Ec32 orthologEc-06_005790.1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.6777472-CDS-P-littoralis_Contig15:133874..1340721680789710.6777472-CDS-P-littoralis_Contig15:133874..134072Pylaiella littoralis U1_48CDSP-littoralis_Contig15 133875..134072 -
1680789710.6892345-CDS-P-littoralis_Contig15:134231..1343121680789710.6892345-CDS-P-littoralis_Contig15:134231..134312Pylaiella littoralis U1_48CDSP-littoralis_Contig15 134232..134312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.47.1prot_P-littoralis_Contig15.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 133875..134312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.47.1

>prot_P-littoralis_Contig15.47.1 ID=prot_P-littoralis_Contig15.47.1|Name=mRNA_P-littoralis_Contig15.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
MSKDSTTHAPLIPMSEIFMPGTGTDESEDHDHAGSNGHALSLIESEISHL
TGVQATNNDEIKKRLTEIQALRESNLVVAGALGGLRKIKDKL*
back to top

mRNA from alignment at P-littoralis_Contig15:133875..134312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.47.1 ID=mRNA_P-littoralis_Contig15.47.1|Name=mRNA_P-littoralis_Contig15.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig15:133875..134312- (Pylaiella littoralis U1_48)
ATGTCGAAAGATTCAACAACCCACGCGCCTCTCATCCCAATGTCGGAAAT
ATTTATGCCCGGGACCGGGACGGACGAGAGCGTCCACGGCGGTGGTGCCC
GCGGCGGTGCTGCCCGCGGCGGTGCTGCCCACGGCGGCGGTGCTGCCCAC
GGTGGCGGTGCCCACGGCGGTGGCGGTGCCCACGGCGGTGGCGGTGCCCA
CGGCGGTGGCGGTGCCCACGGCGGTGCCTATGGCCACAAGGAGGACCATG
ATCACGCGGGGTCGAATGGCCATGCCCTCTCGCTGATCGAGAGCGAGATT
TCCCACCTGACCGGCGTGCAGGCCACGAACAACGACGAAATCAAGAAGAG
GCTGACTGAGATACAGGCCCTTCGAGAGAGCAACCTCGTCGTCGCAGGGG
CTCTGGGGGGTCTCAGGAAGATCAAGGATAAGTTGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig15:133875..134312-

>mRNA_P-littoralis_Contig15.47.1 ID=mRNA_P-littoralis_Contig15.47.1|Name=mRNA_P-littoralis_Contig15.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig15:133875..134312- (Pylaiella littoralis U1_48)
ATGTCGAAAGATTCAACAACCCACGCGCCTCTCATCCCAATGTCGGAAAT
ATTTATGCCCGGGACCGGGACGGACGAGAGCGAGGACCATGATCACGCGG
GGTCGAATGGCCATGCCCTCTCGCTGATCGAGAGCGAGATTTCCCACCTG
ACCGGCGTGCAGGCCACGAACAACGACGAAATCAAGAAGAGGCTGACTGA
GATACAGGCCCTTCGAGAGAGCAACCTCGTCGTCGCAGGGGCTCTGGGGG
GTCTCAGGAAGATCAAGGATAAGTTGTGA
back to top