mRNA_P-littoralis_Contig15.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.41.1
Unique NamemRNA_P-littoralis_Contig15.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig15.41.1 vs. uniprot
Match: Q8QNG8_ESV1K (EsV-1-110 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNG8_ESV1K)

HSP 1 Score: 152 bits (384), Expect = 7.490e-44
Identity = 98/177 (55.37%), Postives = 118/177 (66.67%), Query Frame = 1 
Query:    1 MPIRSVTEIINLSDSSKSPEKLAFKDLVRNIDPRIRERAPRHTSLVFQIPGMLWGQPVYNPQKVARMILRHYEKMGFSCSTFANGGISIRWGGEDEDKEEAGXXXXXXXXXXXXXXXXTDGANTPGTXXXXXXXXXXXXXXXXXXXXXXSRTKCVTVEQMPLSKRLSIIGNNAKNKF 531
            M IRSV EIINLSDSSK+PEKLA+KDLV++IDPRIR RAPRH+SL F+IPG+LWGQPV++  +V +MI+ HY++MGF C   A   I I+WG   +  EE G                TD A     XXXXXXXXXXXXXXX       + TKCVTVEQ+PLSKRLS + N  +   
Sbjct:    1 MAIRSVDEIINLSDSSKNPEKLAYKDLVQHIDPRIRGRAPRHSSLHFKIPGILWGQPVFDADRVEKMIVHHYKRMGFQCVRLAKREILIQWGEGGQRDEEVGRHDSTEDSTESSD---TDSAXXXXXXXXXXXXXXXXXXXXDGEDSRENNTKCVTVEQIPLSKRLSAVNNQLQQNL 174
[Close]
BLAST of mRNA_P-littoralis_Contig15.41.1 vs. uniprot
Match: D8LPD9_ECTSI (EsV-1-110 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPD9_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 4.390e-40
Identity = 113/171 (66.08%), Postives = 133/171 (77.78%), Query Frame = 1 
Query:    1 MPIRSVTEIINLSDSSKSPEKLAFKDLVRNIDPRIRERAPRHTSLVFQIPGMLWGQPVYNPQKVARMILRHYEKMGFSCSTFANGGISIRWGGEDEDKEEAGXXXXXXXXXXXXXXXXTDGANTPGTXXXXXXXXXXXXXXXXXXXXXXSRTKCVTVEQMPLSKRLSIIGN 513
            M IRSV EI+NLSDSSK+PEKLAFKDLV++IDPRIR RAPRH SL F+IPGMLWG PV++  +V +MI+ HY++MGF C+  A   I I+WG    +  +  XXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXX   ++TKCVTVEQ+PLSKRLSI+ N
Sbjct:    1 MAIRSVDEIVNLSDSSKNPEKLAFKDLVQHIDPRIRVRAPRHNSLHFKIPGMLWGHPVFDADRVEKMIVHHYKRMGFQCARLAKREILIQWG----EGGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHENKTKCVTVEQIPLSKRLSIVNN 167
[Close]
BLAST of mRNA_P-littoralis_Contig15.41.1 vs. uniprot
Match: B5LWC4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWC4_9PHYC)

HSP 1 Score: 79.3 bits (194), Expect = 1.870e-15
Identity = 36/91 (39.56%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    7 IRSVTEIINLSDSSKSPEKLAFKDLVRNIDPRIRERA-PRHTSLVFQIPGMLWGQPVYNPQKVARMILRHYEKMGFSCSTFANGGISIRWG 276
            IRSV EI++LS+S ++P+K+A+K LV+ +D  +R RA  +     F++P M+  QP +N +KVA+ + +HYE +GF+C   +   +++ WG
Sbjct:    5 IRSVEEIVSLSESGRTPDKMAYKYLVQQVDRLLRARALDQQHDASFEVPAMVLFQPHFNREKVAQRLFKHYENIGFACK-MSGYNVNLEWG 94
[Close]
BLAST of mRNA_P-littoralis_Contig15.41.1 vs. uniprot
Match: Q6XM08_9PHYC (FirrV-1-B28 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM08_9PHYC)

HSP 1 Score: 64.7 bits (156), Expect = 7.390e-10
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:    7 IRSVTEIINLSDSSKSPEKLAFKDLVRNIDPRIRERA-PRHTSLVFQIPGMLWGQPVYNPQKVARMILRHYEKMGF 231
            IRSV EI+ +S+S K+P+K+ ++ L++ ID  IR RA  +     F+IP ++  +P +N  +VA+ I  HY K+GF
Sbjct:    5 IRSVEEIVGISESGKTPDKMVYRYLIKQIDRLIRSRALEQRYDAHFEIPAIVMFKPHFNRLRVAKKICAHYTKIGF 80
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QNG8_ESV1K7.490e-4455.37EsV-1-110 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPD9_ECTSI4.390e-4066.08EsV-1-110 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
B5LWC4_9PHYC1.870e-1539.56Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM08_9PHYC7.390e-1040.79FirrV-1-B28 n=1 Tax=Feldmannia irregularis virus a... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:126664..127260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size534
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionEsV-1-110
Ec32 orthologEc-06_005720.1
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789710.4369776-CDS-P-littoralis_Contig15:126663..1267481680789710.4369776-CDS-P-littoralis_Contig15:126663..126748Pylaiella littoralis U1_48CDSP-littoralis_Contig15 126664..126748 -
1680789710.4500785-CDS-P-littoralis_Contig15:126811..1272601680789710.4500785-CDS-P-littoralis_Contig15:126811..127260Pylaiella littoralis U1_48CDSP-littoralis_Contig15 126812..127260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.41.1prot_P-littoralis_Contig15.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 126664..127260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.41.1

>prot_P-littoralis_Contig15.41.1 ID=prot_P-littoralis_Contig15.41.1|Name=mRNA_P-littoralis_Contig15.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp
MPIRSVTEIINLSDSSKSPEKLAFKDLVRNIDPRIRERAPRHTSLVFQIP
GMLWGQPVYNPQKVARMILRHYEKMGFSCSTFANGGISIRWGGEDEDKEE
AGDARDAGDAGDAGDAGDTDGANTPGTGTGTGTGTGPGSGSGSGSGSGSS
RTKCVTVEQMPLSKRLSIIGNNAKNKF*
back to top

mRNA from alignment at P-littoralis_Contig15:126664..127260-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.41.1 ID=mRNA_P-littoralis_Contig15.41.1|Name=mRNA_P-littoralis_Contig15.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=597bp|location=Sequence derived from alignment at P-littoralis_Contig15:126664..127260- (Pylaiella littoralis U1_48)
ATGCCCATACGATCGGTCACGGAAATTATTAACCTCTCAGATTCGTCAAA
GAGCCCGGAAAAGCTGGCCTTCAAAGACCTCGTGAGGAACATCGACCCCC
GTATCAGGGAGCGGGCACCGAGGCACACAAGCCTGGTCTTCCAGATCCCC
GGGATGCTGTGGGGTCAGCCCGTATATAATCCCCAAAAGGTGGCGAGAAT
GATTCTGCGCCACTACGAGAAGATGGGGTTTTCGTGTTCCACCTTCGCAA
ACGGCGGAATATCCATCCGATGGGGCGGAGAAGACGAAGACAAAGAGGAA
GCCGGTGACGCCCGTGACGCCGGTGACGCCGGTGACGCCGGTGACGCCGG
TGACACTGATGGCGCCAACACGCCTGGAACTGGAACTGGAACTGGAACTG
GAACGGGCCCCGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCGGCTCATCG
TCGTCGTCGGGGCACTCCACCTCTGACTCCGAGACCGACTCCGATGGACA
CGGTGGCGCGAGCAGGACAAAGTGTGTCACGGTCGAACAGATGCCCCTAA
GCAAAAGACTTTCTATCATCGGCAACAATGCGAAAAACAAGTTCTAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig15:126664..127260-

>mRNA_P-littoralis_Contig15.41.1 ID=mRNA_P-littoralis_Contig15.41.1|Name=mRNA_P-littoralis_Contig15.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig15:126664..127260- (Pylaiella littoralis U1_48)
ATGCCCATACGATCGGTCACGGAAATTATTAACCTCTCAGATTCGTCAAA
GAGCCCGGAAAAGCTGGCCTTCAAAGACCTCGTGAGGAACATCGACCCCC
GTATCAGGGAGCGGGCACCGAGGCACACAAGCCTGGTCTTCCAGATCCCC
GGGATGCTGTGGGGTCAGCCCGTATATAATCCCCAAAAGGTGGCGAGAAT
GATTCTGCGCCACTACGAGAAGATGGGGTTTTCGTGTTCCACCTTCGCAA
ACGGCGGAATATCCATCCGATGGGGCGGAGAAGACGAAGACAAAGAGGAA
GCCGGTGACGCCCGTGACGCCGGTGACGCCGGTGACGCCGGTGACGCCGG
TGACACTGATGGCGCCAACACGCCTGGAACTGGAACTGGAACTGGAACTG
GAACGGGCCCCGGCTCCGGCTCCGGCTCCGGCTCCGGCTCCGGCTCATCC
AGGACAAAGTGTGTCACGGTCGAACAGATGCCCCTAAGCAAAAGACTTTC
TATCATCGGCAACAATGCGAAAAACAAGTTCTAA
back to top