mRNA_P-littoralis_Contig15.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.17.1
Unique NamemRNA_P-littoralis_Contig15.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig15.17.1 vs. uniprot
Match: Q8QNA4_ESV1K (EsV-1-183 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNA4_ESV1K)

HSP 1 Score: 146 bits (369), Expect = 8.410e-43
Identity = 71/135 (52.59%), Postives = 90/135 (66.67%), Query Frame = 1 
Query:    1 MDAKQMFSLLKTCIIGESFRACGVGYDPEDNLETYHLSDFCDDYAEEDVTGTFRSPEHFLEDLCGSSVVQIYDAIRTMESAWNGGGG--VVKVPMPICKSLWELGCAEACMYLEDFCEEESACWFAKHGISLFKK 399
            MD  +MF +LKTCIIGESFRACGVGY PED LE YH SDF D+  E+D+TG+F SPEHFLE+LC S+  ++YD IR M++ W  G    + K      K LW+LG AEA  Y++D   ++ A  F  +G  LF K
Sbjct:    1 MDTAEMFEVLKTCIIGESFRACGVGYHPEDALEAYHASDFFDNVDEDDITGSFHSPEHFLENLCSSNAGRVYDTIREMDNLWKSGSSESLSKSSAETMKLLWDLGNAEALQYIDDNFGQQMAQGFLDYGTLLFGK 135
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BLAST of mRNA_P-littoralis_Contig15.17.1 vs. uniprot
Match: D8LPK2_ECTSI (EsV-1-183 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPK2_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 8.720e-41
Identity = 68/133 (51.13%), Postives = 89/133 (66.92%), Query Frame = 1 
Query:    1 MDAKQMFSLLKTCIIGESFRACGVGYDPEDNLETYHLSDFCDDYAEEDVTGTFRSPEHFLEDLCGSSVVQIYDAIRTMESAWNGGG--GVVKVPMPICKSLWELGCAEACMYLEDFCEEESACWFAKHGISLF 393
            MD  +MF +L+TCIIGESFRACGVGY PED LE YH S+F D+  E+D+TG+F SPEHFLE+LC S+  ++YD IR M+  W  G    + +      K LW+LG AEA  Y++D   +  A  F ++G SLF
Sbjct:    1 MDTGEMFEVLRTCIIGESFRACGVGYHPEDALEAYHASEFFDNVDEDDITGSFHSPEHFLENLCSSNAGRVYDTIREMDDLWESGSPESLSRSSAETMKLLWDLGNAEALQYIDDNFGQPVAQEFLEYGSSLF 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNA4_ESV1K8.410e-4352.59EsV-1-183 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPK2_ECTSI8.720e-4151.13EsV-1-183 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:77836..78237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size402
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-183
Ec32 orthologEc-06_005090.1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789709.4728103-CDS-P-littoralis_Contig15:77835..782371680789709.4728103-CDS-P-littoralis_Contig15:77835..78237Pylaiella littoralis U1_48CDSP-littoralis_Contig15 77836..78237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.17.1prot_P-littoralis_Contig15.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 77836..78237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.17.1

>prot_P-littoralis_Contig15.17.1 ID=prot_P-littoralis_Contig15.17.1|Name=mRNA_P-littoralis_Contig15.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
MDAKQMFSLLKTCIIGESFRACGVGYDPEDNLETYHLSDFCDDYAEEDVT
GTFRSPEHFLEDLCGSSVVQIYDAIRTMESAWNGGGGVVKVPMPICKSLW
ELGCAEACMYLEDFCEEESACWFAKHGISLFKK*
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mRNA from alignment at P-littoralis_Contig15:77836..78237+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.17.1 ID=mRNA_P-littoralis_Contig15.17.1|Name=mRNA_P-littoralis_Contig15.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig15:77836..78237+ (Pylaiella littoralis U1_48)
ATGGATGCGAAGCAAATGTTTAGCCTTTTGAAGACGTGTATTATCGGCGA
GAGCTTCCGGGCCTGTGGTGTTGGGTACGACCCGGAAGACAATTTAGAAA
CGTACCACCTGAGCGATTTTTGCGACGATTACGCGGAAGAGGACGTCACC
GGCACGTTCCGGTCCCCCGAGCATTTCCTGGAAGACCTGTGCGGCTCGAG
CGTGGTGCAAATCTATGATGCGATTCGCACGATGGAAAGTGCTTGGAACG
GCGGGGGCGGTGTCGTGAAAGTTCCGATGCCGATCTGCAAGAGCCTGTGG
GAGCTGGGGTGTGCAGAGGCTTGTATGTATTTGGAAGATTTCTGCGAGGA
GGAGAGCGCGTGCTGGTTCGCAAAGCACGGAATCTCGTTGTTCAAAAAAT
AA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:77836..78237+

>mRNA_P-littoralis_Contig15.17.1 ID=mRNA_P-littoralis_Contig15.17.1|Name=mRNA_P-littoralis_Contig15.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig15:77836..78237+ (Pylaiella littoralis U1_48)
ATGGATGCGAAGCAAATGTTTAGCCTTTTGAAGACGTGTATTATCGGCGA
GAGCTTCCGGGCCTGTGGTGTTGGGTACGACCCGGAAGACAATTTAGAAA
CGTACCACCTGAGCGATTTTTGCGACGATTACGCGGAAGAGGACGTCACC
GGCACGTTCCGGTCCCCCGAGCATTTCCTGGAAGACCTGTGCGGCTCGAG
CGTGGTGCAAATCTATGATGCGATTCGCACGATGGAAAGTGCTTGGAACG
GCGGGGGCGGTGTCGTGAAAGTTCCGATGCCGATCTGCAAGAGCCTGTGG
GAGCTGGGGTGTGCAGAGGCTTGTATGTATTTGGAAGATTTCTGCGAGGA
GGAGAGCGCGTGCTGGTTCGCAAAGCACGGAATCTCGTTGTTCAAAAAAT
AA
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