mRNA_P-littoralis_Contig15.129.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig15.129.2
Unique NamemRNA_P-littoralis_Contig15.129.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig15.129.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig15contigP-littoralis_Contig15:477898..479131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size225
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789708.0851946-UTR-P-littoralis_Contig15:477897..4779141680789708.0851946-UTR-P-littoralis_Contig15:477897..477914Pylaiella littoralis U1_48UTRP-littoralis_Contig15 477898..477914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789708.0955555-CDS-P-littoralis_Contig15:477914..4780391680789708.0955555-CDS-P-littoralis_Contig15:477914..478039Pylaiella littoralis U1_48CDSP-littoralis_Contig15 477915..478039 -
1680789708.1080594-CDS-P-littoralis_Contig15:479049..4791311680789708.1080594-CDS-P-littoralis_Contig15:479049..479131Pylaiella littoralis U1_48CDSP-littoralis_Contig15 479050..479131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig15.129.2prot_P-littoralis_Contig15.129.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig15 477915..479131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig15.129.2

>prot_P-littoralis_Contig15.129.2 ID=prot_P-littoralis_Contig15.129.2|Name=mRNA_P-littoralis_Contig15.129.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
DILRVATHFEFCGNTQYRLRTRNRRAPGCRRCFRRRRRMREGRGHDRTPR
PPRVIVHWRATAALRDHE*
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mRNA from alignment at P-littoralis_Contig15:477898..479131-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig15.129.2 ID=mRNA_P-littoralis_Contig15.129.2|Name=mRNA_P-littoralis_Contig15.129.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1234bp|location=Sequence derived from alignment at P-littoralis_Contig15:477898..479131- (Pylaiella littoralis U1_48)
GACATTCTGAGGGTTGCTACGCACTTCGAATTTTGCGGGAACACCCAGTA
TAGGCTGAGAACGCGCAATCGGCGCGCACCAGGTTTGAACTTAAATTTTA
CGTTCCGCCGACGCACACCGGCTCTCTTCATCTTACGCGCCAAAAAGAAA
AACAGATGTACTTCGTGTGTCGCTAGACTGATTAGGTTTTTCCGCGAGCG
CGCGAATCCACGGCCCCCCGCGAATCTGCTAGGCCCCTCCTATTTTTTCG
CCGGTGCGCAGCATTGTTCCTCGCAAGCCGTTTCACCAATGTCAGCTGAC
TGCGGTTCAGGCTTCCGGGCAATTTCGAATGGGTGCAGACTAGTCTTACA
CGTGACAAATTCTTCGTCCTGCCTGAACTCTTCCTCACTGCCGCGAACAT
CGATTGACTTATGCGCACATACTCTATCATTCGAAGATAACAATATGCGG
ACCATGACCATTGCTCCCATTCCCTGTCCTCCACAGCAGTACTTCCTCAA
AGAGGCAGCGTCCCACAAGAGGAAATGACGTAGAATACCACCCCTCTTGC
GCAATTATGAATCTACCGTGCTCGATGTTTCGCGCGCGAGTGGTTTCATA
CTTTCCACCACTATTAATAGCTGTTAATTTGCTTGCATGATTTGCACCCT
TGTTTTGGCGAGCGTTAAAGGCTGTATTTCAGCTGTTGTTTTTGTCACAT
TGAAAACCGTTCCGTTCTCTCTATCCAGTACCTCCAGCTGTCCGTGCTCT
TCCAACACTTGCGTCGGGCGATTCCCGTGGTCACAAGCTAACTACCCTAA
GAAAAGGTATTCTAAAATAAAACACAAAAAAAAACGGACCACGGAGCCGA
AAGATCAGCAAAGCAGTAGAAAGAAGCAGCAGAAGCATATTTAAAATATA
ACTCAACGCATGTCGTGCTCAAGAGGCGGGGAATGGACGGGGAGTTTGTG
CATCTTAGGCGATAGGTGTCTCAATGGCAATCAGGTATAACCTCTTGTCG
CGTGAACACATGTGCATGCCTATTCATAAAAGCCGATGAATTTCGAATAG
TTCCCATTTTTATATCGTTCACACCGCAACGGCTACCGACAGGCTGCCGT
CGATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCG
CACACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGC
TCCGAGACCACGAGTAAGCCTACTTCACCATAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig15:477898..479131-

>mRNA_P-littoralis_Contig15.129.2 ID=mRNA_P-littoralis_Contig15.129.2|Name=mRNA_P-littoralis_Contig15.129.2|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig15:477898..479131- (Pylaiella littoralis U1_48)
GACATTCTGAGGGTTGCTACGCACTTCGAATTTTGCGGGAACACCCAGTA
TAGGCTGAGAACGCGCAATCGGCGCGCACCAGGCTGCCGTCGATGCTTTC
GACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCACACCACGC
CCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTCCGAGACCA
CGAGTAA
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