mRNA_P-littoralis_Contig149.42.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig149.42.1 vs. uniprot
Match: D7FW88_ECTSI (40S ribosomal protein S21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW88_ECTSI) HSP 1 Score: 166 bits (420), Expect = 3.360e-52 Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1
Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSATQINVGKLDPTSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDESEL 243
MQNEAGSNVDLYIPRKCSWTNRLLQAKDHS+TQINVGKLDP SGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDESEL
Sbjct: 1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDESEL 81
BLAST of mRNA_P-littoralis_Contig149.42.1 vs. uniprot
Match: B8BZU9_THAPS (40S ribosomal protein S21 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZU9_THAPS) HSP 1 Score: 114 bits (285), Expect = 1.440e-31 Identity = 51/81 (62.96%), Postives = 60/81 (74.07%), Query Frame = 1
Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSATQINVGKLDPTSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDESEL 243
MQNE G NVDLYIPRKCSWTNRL++AKDH + QINV +DP +G FTGES YA+AGY+R + E D A T LV D+ L
Sbjct: 1 MQNENGENVDLYIPRKCSWTNRLIRAKDHGSVQINVANVDPVTGLFTGESTAYAMAGYIRDKSEGDMAFTALVEANDKKVL 81
BLAST of mRNA_P-littoralis_Contig149.42.1 vs. uniprot
Match: A0A1Z5KP36_FISSO (40S ribosomal protein S21 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP36_FISSO) HSP 1 Score: 114 bits (284), Expect = 2.050e-31 Identity = 51/77 (66.23%), Postives = 62/77 (80.52%), Query Frame = 1
Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSATQINVGKLDPTSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 231
MQNE+G NVDLY+PRKCS+TNRL+QAKDH+A QINV +DP +G TG+S+VY LAGY+R + E D ALT LV KD
Sbjct: 1 MQNESGQNVDLYVPRKCSYTNRLIQAKDHAAVQINVANVDPVTGIMTGDSNVYCLAGYIRFKSEGDMALTSLVRAKD 77
BLAST of mRNA_P-littoralis_Contig149.42.1 vs. uniprot
Match: A0A024TLB5_9STRA (40S ribosomal protein S21 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLB5_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.460e-30 Identity = 49/78 (62.82%), Postives = 64/78 (82.05%), Query Frame = 1
Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSATQINVGKLDPTSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDE 234
MQN+AG N+D+YIPRKCSWTNR+L AKDH++ QI V K+D +G +TG++DVYAL+GY+R +GE D ALT LV K +E
Sbjct: 1 MQNDAGQNIDIYIPRKCSWTNRILSAKDHASVQIAVAKVD-ANGVYTGQNDVYALSGYIRAKGEGDHALTDLVRKAEE 77
BLAST of mRNA_P-littoralis_Contig149.42.1 vs. uniprot
Match: G4ZUD9_PHYSP (40S ribosomal protein S21 n=7 Tax=Peronosporaceae TaxID=4777 RepID=G4ZUD9_PHYSP) HSP 1 Score: 110 bits (275), Expect = 4.200e-30 Identity = 49/77 (63.64%), Postives = 63/77 (81.82%), Query Frame = 1
Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSATQINVGKLDPTSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 231
MQNEAG ++D+YIPRKCSWTNR+L AKDH++ QINVG+++ +G FTGESD YALAGY+R GE D+A+T L + D
Sbjct: 1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVN-ANGVFTGESDTYALAGYIRHHGEGDQAITELARQTD 76
BLAST of mRNA_P-littoralis_Contig149.42.1 vs. uniprot
Match: A0A7S0FIC7_9STRA (40S ribosomal protein S21 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FIC7_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.430e-29 Identity = 48/77 (62.34%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSATQINVGKLDPTSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 231
MQNE G NVDLY+PRKCSWTNRLL + DH + QINVG +DP +G FTGES +A++GY+R + EAD ALT L D
Sbjct: 1 MQNENGDNVDLYVPRKCSWTNRLLTSGDHGSVQINVGNVDPVTGLFTGESTPFAISGYVRAKSEADMALTALAKAND 77
BLAST of mRNA_P-littoralis_Contig149.42.1 vs. uniprot
Match: A0A835Z072_9STRA (40S ribosomal protein S21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z072_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.970e-29 Identity = 48/77 (62.34%), Postives = 62/77 (80.52%), Query Frame = 1
Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSATQINVGKLDPTSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 231
MQNE+G +VDLY+PRKCSWTNRLL AKDH++ QINV K+DP +G TG +V+ALAG+LR G++D AL L ++KD
Sbjct: 1 MQNESGKDVDLYVPRKCSWTNRLLVAKDHASVQINVAKIDPQTGVATGAHEVFALAGFLRRLGQSDNALAALSSQKD 77
BLAST of mRNA_P-littoralis_Contig149.42.1 vs. uniprot
Match: K3WSU9_GLOUD (40S ribosomal protein S21 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSU9_GLOUD) HSP 1 Score: 108 bits (270), Expect = 2.430e-29 Identity = 49/77 (63.64%), Postives = 63/77 (81.82%), Query Frame = 1
Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSATQINVGKLDPTSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 231
MQNEAG ++D+YIPRKCSWTNR+L AKDH++ QINV +++ +G FTGESD +ALAGY+R +GEAD ALT L + D
Sbjct: 1 MQNEAGESIDIYIPRKCSWTNRILAAKDHASVQINVARVN-ANGVFTGESDTFALAGYIRSKGEADLALTELARQAD 76
BLAST of mRNA_P-littoralis_Contig149.42.1 vs. uniprot
Match: A0A448Z9N0_9STRA (40S ribosomal protein S21 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9N0_9STRA) HSP 1 Score: 108 bits (269), Expect = 4.080e-29 Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1
Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSATQINVGKLDPTSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKD 231
MQNEAG NVDLY+PRKC+WTNRL++AKDHS+ Q+NV +DP +G TG++ Y L GY+R E D ALT LV K D
Sbjct: 1 MQNEAGENVDLYVPRKCNWTNRLVEAKDHSSVQVNVANVDPVTGLATGDATPYCLVGYIRKISEGDMALTALVEKND 77
BLAST of mRNA_P-littoralis_Contig149.42.1 vs. uniprot
Match: A0A8J2SUB2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SUB2_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.270e-28 Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 1
Query: 1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSATQINVGKLDPTSGTFTGESDVYALAGYLRGRGEADEALTCLVNKKDES 237
MQN+ G VDLYIPRKCSWTNRL+ A D ++ QINVG +DP +G TG S+ YAL+GY+R +GE+D ALT LV K+DES
Sbjct: 109 MQNDQGQPVDLYIPRKCSWTNRLIGASDQASVQINVGTIDPNTGLHTGGSETYALSGYVRNKGESDMALTELVRKQDES 187 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig149.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig149.42.1 >prot_P-littoralis_Contig149.42.1 ID=prot_P-littoralis_Contig149.42.1|Name=mRNA_P-littoralis_Contig149.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSATQINVGKLDPTSGTFTGESback to top mRNA from alignment at P-littoralis_Contig149:168130..170534+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig149.42.1 ID=mRNA_P-littoralis_Contig149.42.1|Name=mRNA_P-littoralis_Contig149.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2405bp|location=Sequence derived from alignment at P-littoralis_Contig149:168130..170534+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig149:168130..170534+ >mRNA_P-littoralis_Contig149.42.1 ID=mRNA_P-littoralis_Contig149.42.1|Name=mRNA_P-littoralis_Contig149.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig149:168130..170534+ (Pylaiella littoralis U1_48)back to top |