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Homology
BLAST of mRNA_P-littoralis_Contig148.97.2 vs. uniprot
Match: D7G7U6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7U6_ECTSI) HSP 1 Score: 526 bits (1355), Expect = 3.530e-178 Identity = 370/618 (59.87%), Postives = 424/618 (68.61%), Query Frame = 1
Query: 46 QRENNRELSSFDVLGRPANFQTTGTTALDDDDPRLVGSHLRPARSQPYYATYALAEEGLASGTARSTESGLEQALGRERNDSDEELEAIRGSVRSLRAQRAAVEKLKEKARAGEGEAEVLRRKLAEAENRTQELRAQGGRDVVRRLMDEVTELRARLKATSKAFQTRENSVAELREAVENLRLDLRAGQEKSRAQSRKLEQQGQESQEQRVTISRLEDACARCEERAELAEKTAEQKCAASGRELASLSALLREANATIDASKGSMQTALAKQMEKLEAARKEIESLLSHKGQAQKRVQELTSLCERQRSKLAEAALRAKEMERVASAAKEDTGLAEALVAKLRAELSTVDRCRREEDAAATIKLRSATRQADELKAQLARVQSEAAEQARQLVRHRDEMSSFRIDVSKLREAAAQQGDIRQAVRDRDETIRDLRQRLELERRERGQWGQARKQLLLEFCEEENKLRSTLQPAAQQERPQPKQQRNTRRRPQQQPAVDHALPPRRDLRPANEKTLSRHSTRXXXXXXXXXXXXXXGSANSSFRDGLRVDRGVQEEKGAGISE-DDGLFDFARGTYGGDRDGADSFGLGDVGDHAR---RAAMAADDFGMRPGGRLSQR 1887
+ N+ + SFDVLG TT T L+ P L+GSH R R Q +++ YAL EG+ASGT STESGLEQ RE DSD+ELEAIRGSVRSLRAQRAAVEKLKEKAR RAQGGRDVVRRLMDEVTELRARLKATS AFQTRENSVA+LREAV+ L LDLRAGQEK+RAQSRKLEQQ CAASGRELASLSALLREANAT+DASKGSMQ +AKQ EKLEAARKE ESLL KGQ Q+RV+ELTS+CERQRSKLA+A RA+E+ER+ASAAK++T LA+ AKL+ ELS D+ RREEDA ATIKLR+A RQ +EL++++ V+SEAAE+ARQLVRHRDEMS+FR DVSKLREAA QQGD+RQAVRDRDETIRDLR++LELERRERGQWGQARKQLLLEFCEEENKLRSTLQPA QE R+TRR+ ++Q ++HA P D R K LSRH+T SANSS R V R +EEK G SE + L D A G G RDG G G +G + MA+D+F MRPG +LSQ+
Sbjct: 2 ENTNSSQDLSFDVLGVLPTVPTT--TPLE---PSLIGSHTRTGRPQSHHS-YALGGEGIASGTGGSTESGLEQGFERESYDSDQELEAIRGSVRSLRAQRAAVEKLKEKARLXXXXXXXXXXXXXXXXXXXXXXRAQGGRDVVRRLMDEVTELRARLKATSTAFQTRENSVADLREAVQTLTLDLRAGQEKARAQSRKLEQQ-----------------------------------CAASGRELASLSALLREANATLDASKGSMQATVAKQAEKLEAARKEKESLLFEKGQTQERVKELTSMCERQRSKLADAGHRARELERLASAAKKETRLAQEQAAKLKTELSAADKRRREEDAGATIKLRTAARQVEELRSEVVLVKSEAAEKARQLVRHRDEMSAFREDVSKLREAAVQQGDMRQAVRDRDETIRDLRRQLELERRERGQWGQARKQLLLEFCEEENKLRSTLQPAQHQE------PRSTRRQGRKQAILEHAPPTGSDRRLTRHKPLSRHAT---IRNIRTNGDSRRSSANSSLRGEACVAR--EEEKVFGDSEAGEVLLDLAGG---GVRDG----GTGTLGGYEEGNSSRTMASDEFEMRPGQQLSQQ 560
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 0 |
| Model size | 1911 |
| Hectar predicted targeting category | other localisation |
| Exons | 10 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-06_000260.1 |
| Cds size | 1911 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789700.3337638-CDS-P-littoralis_Contig148:371868..372355 | 1680789700.3337638-CDS-P-littoralis_Contig148:371868..372355 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig148 371869..372355 - |
| 1680789700.3512695-CDS-P-littoralis_Contig148:372642..372724 | 1680789700.3512695-CDS-P-littoralis_Contig148:372642..372724 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig148 372643..372724 - |
| 1680789700.3612814-CDS-P-littoralis_Contig148:373038..373138 | 1680789700.3612814-CDS-P-littoralis_Contig148:373038..373138 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig148 373039..373138 - |
| 1680789700.3724134-CDS-P-littoralis_Contig148:373367..373547 | 1680789700.3724134-CDS-P-littoralis_Contig148:373367..373547 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig148 373368..373547 - |
| 1680789700.385836-CDS-P-littoralis_Contig148:373829..374000 | 1680789700.385836-CDS-P-littoralis_Contig148:373829..374000 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig148 373830..374000 - |
| 1680789700.3953204-CDS-P-littoralis_Contig148:374407..374542 | 1680789700.3953204-CDS-P-littoralis_Contig148:374407..374542 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig148 374408..374542 - |
| 1680789700.4045208-CDS-P-littoralis_Contig148:374730..374835 | 1680789700.4045208-CDS-P-littoralis_Contig148:374730..374835 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig148 374731..374835 - |
| 1680789700.4134254-CDS-P-littoralis_Contig148:375145..375304 | 1680789700.4134254-CDS-P-littoralis_Contig148:375145..375304 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig148 375146..375304 - |
| 1680789700.428025-CDS-P-littoralis_Contig148:375651..375914 | 1680789700.428025-CDS-P-littoralis_Contig148:375651..375914 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig148 375652..375914 - |
| 1680789700.436889-CDS-P-littoralis_Contig148:376297..376526 | 1680789700.436889-CDS-P-littoralis_Contig148:376297..376526 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig148 376298..376526 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig148.97.2 >prot_P-littoralis_Contig148.97.2 ID=prot_P-littoralis_Contig148.97.2|Name=mRNA_P-littoralis_Contig148.97.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=637bp
LCGSGSWTTIDRGRGQRENNRELSSFDVLGRPANFQTTGTTALDDDDPRL VGSHLRPARSQPYYATYALAEEGLASGTARSTESGLEQALGRERNDSDEE LEAIRGSVRSLRAQRAAVEKLKEKARAGEGEAEVLRRKLAEAENRTQELR AQGGRDVVRRLMDEVTELRARLKATSKAFQTRENSVAELREAVENLRLDL RAGQEKSRAQSRKLEQQGQESQEQRVTISRLEDACARCEERAELAEKTAE QKCAASGRELASLSALLREANATIDASKGSMQTALAKQMEKLEAARKEIE SLLSHKGQAQKRVQELTSLCERQRSKLAEAALRAKEMERVASAAKEDTGL AEALVAKLRAELSTVDRCRREEDAAATIKLRSATRQADELKAQLARVQSE AAEQARQLVRHRDEMSSFRIDVSKLREAAAQQGDIRQAVRDRDETIRDLR QRLELERRERGQWGQARKQLLLEFCEEENKLRSTLQPAAQQERPQPKQQR NTRRRPQQQPAVDHALPPRRDLRPANEKTLSRHSTRHSMNSTEPSGEKAG GSANSSFRDGLRVDRGVQEEKGAGISEDDGLFDFARGTYGGDRDGADSFG LGDVGDHARRAAMAADDFGMRPGGRLSQRVGVVRVP* back to topmRNA from alignment at P-littoralis_Contig148:371869..376526- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig148.97.2 ID=mRNA_P-littoralis_Contig148.97.2|Name=mRNA_P-littoralis_Contig148.97.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4658bp|location=Sequence derived from alignment at P-littoralis_Contig148:371869..376526- (Pylaiella littoralis U1_48) TTGTGCGGATCAGGGTCATGGACAACAATAGACCGCGGGAGAGGACAAAG
GGAAAACAACCGTGAGTTGTCGTCGTTCGACGTTCTCGGCAGACCGGCGA
ACTTCCAAACTACCGGCACCACCGCACTCGACGATGACGATCCACGCCTC
GTCGGCTCGCACTTACGCCCGGCGCGGTCTCAGCCTTACTATGCGACGTA
TGCTCTCGCAGAGGAAGGATTAGCATCAGGTGAAGTTTCATTTGGAGCTT
GCAAGTGAAGCTTACGGTACGCTGAGTGGTATTCACGAAAAACGCACAAG
GCGACACAACAGCAGTATGATATAATAGTATAAATCTGGAGAGACAATGC
TACACGTCGTGTCCAATCGATTTTTAATAATCTGCCTTGTGTTCCTACCG
TATAATGTGCGCTCGTTGTTCGGTACCTACCTGGGCAGGGTGAGACACTC
TCATCGTGTGAAGATTGGATGTCACACCCAAACTACTTGGCTGTTCCTTT
GCCCATCCATCACGGCCCTTCTTACCGCCCCATATGTTTGCGGAGAACAC
GCCGATGGGCTCGGACGGTGATCACACATTTACCAACAAAACACCCAATC
ACGACGCCTCAGGTACCGCTCGGAGCACAGAGTCTGGTCTTGAGCAAGCT
CTTGGTCGAGAGCGCAACGATTCCGACGAAGAACTAGAAGCGATCCGAGG
CTCGGTACGCAGCCTGCGTGCTCAGCGGGCTGCCGTGGAGAAGCTGAAGG
AGAAGGCGCGGGCAGGGGAGGGTGAAGCGGAGGTGCTCAGGCGCAAGCTT
GCGGAGGCGGAAAATCGAACACAGGAGCTGCGGGCGCAGGGAGGGCGAGA
TGTGGTGCGACGCCTCATGGACGAGGTGCATGATGTGACTGACTTACTGC
TACATTCTGTGAAAATTTTCGGAAAGGACCATTCATGCACATGCAGCGAA
AGAAGTTTGCGTGTACTTGTATGCGGCGTGCAGCAGTCGACCACTACTGC
TGTGCCGTGAAACTTTCTCGGCGGACACGGTACATGTCGGATAGACGCCG
GTGGTGCTGTGGCGATCTGCGGGAAAGTGGCAACCTGTCACCTACATGGG
GTCGAAACTCTCCTATGATCGTGAGCCATAAAGACGCCGTTCTTTCACAC
TGGCTGGCGCTTCGCCGATGACGTATCATACGCACTCAATCAACCCCAAC
GGTCTGGTCTGGCATTCGTCAGGTGACTGAACTGCGCGCTCGGCTCAAGG
CCACTTCTAAAGCCTTTCAGACCCGGGAGAACAGCGTGGCCGAGCTGCGG
GAGGCTGTGGAGAACTTGAGGCTGGATTTACGCGCCGGGCAGGAAAAGTC
GAGAGCGCAGTCTCGAAAGCTCGAACAGCAGGTGGCCGTTTCGTGGTACA
GTGTTGATGTAGGCCTTGAACACCTGGTCGTGAGTCGTGGACCACCCTAT
CAGATGGATCTCCGTCTTGCCGCACGGATTGATGTTCATGTGGCATTGCA
TGCATTTATTTTTATCTTTCATCCCCACAAAAGCGTCGAGACTGGCCTGT
AGTATGAGTCCATCTGGCAAATCACACGCTCCATCCTGAAACAGGTGCGG
TGCAACTATGATAATTTCCCCGTCCCTCCGAAACTTACTGTATTATTACT
TCGTCTACCTTTGTACACACTCCTAACATTTCCTCTTCAAGGGTCAGGAA
TCGCAAGAGCAGCGAGTCACCATCAGTCGCTTGGAAGACGCTTGTGCGAG
GTGCGAAGAAAGAGCAGAGCTGGCAGAGAAGACGGCGGAGCAGAAGGTAC
GACCGGCCGCCGACAGCTTGTACCTTGATTTCCGATGGAGTTTTGGGATT
GATTTGTTTGTGCAACTTGTTTTCAAGTAGGACTCGCTTTTCGGGCGCTC
ACCTTTTTCCCCGAATTCTTTTTGTCCATACCTGACCGCTGGCTGTTCGT
ACCATACCGTTTGCTGCTGCCGCATCGATTTCAGTGCGCGGCGTCCGGGC
GTGAGTTAGCATCGCTGTCGGCGCTCTTGAGAGAGGCCAACGCCACGATC
GACGCTTCCAAAGGGTCAATGCAAACAGCCTTGGCGAAACAAATGGAAAA
GCTCGAAGCAGCGCGCAAGGTGAGCAGTGAGAGGCACCACTCATGCTGTC
AGTCACACATTGGTGGGCTTGGTGCGGAGGAGATAGCTTGCTGCCGCTGC
TACTGCTGTGTTTATGTTGCCCCTCGCCGTGTTTCAAAGGCTTGGATCGT
TGTACATTGTTCTTTTTATACACCGCAGTGAGTTTTCCCGTTTTATGTCA
TTAAGCACCCACGTACGATCGCCGTCCGGGCGAGCGTCGTCTTTGCTGCA
GGTTGACAGTTGTTCTGCATACTGCTGTATTCTGTATTATTCGCGGAAAT
GCTGTGCGAAAAAAGTTCGATCTGTCGAGCTGATTGTGCGTGAGCAAGGA
AACAAACTCACCACCGAAAAACGACCCCAATCGAAAGCACGCAGCAACGA
ATGATCCCTGTATCTGCCCGCGGCAGGAAATAGAGTCCTTGCTGTCCCAT
AAAGGGCAGGCTCAGAAACGCGTGCAGGAACTTACCTCCCTATGCGAGCG
ACAGCGATCGAAGCTCGCTGAAGCGGCGCTTCGAGCGAAAGAGATGGAAC
GCGTGGCATCGGCGGCGAAGGAAGACACCGGACTAGCAGAGGCCCTGGTG
CGTAAGGACGGTGACAGGAATTGGAGGGGTGGGTCGCGTGTTGTGGTGTT
TTCTCCGCCGTGAACAGAGCCTTTGGTTCACGTTCGATGAACCGTGCGTG
CGAGGTGCCGCGAACCACGAAGGGGTGTGTACAGCTTGCATCCAATCACG
CACGTCGTGTCGTACAACGGCGGTATCATGTACTTCGTACGGCAGTAACC
GGGCGTACACACGCCACGAGTGCTGCGACTTATTCCGTGCAGGTCTGTCC
GGCCGGGTTGTCTGTCCCAACACCTCCAGGTGGCAAAGCTGAGAGCAGAG
CTGTCTACAGTAGACCGGTGCAGGAGGGAAGAGGACGCCGCAGCAACGAT
AAAGCTTAGGAGCGCCACCCGCCAAGCGGATGAACTCAAGGCCCAGCTGG
CGAGAGTGCAGTCGGAGGCGGCGGAGCAGGCGCGTCAGCTCGTCAGGCAT
CGCGATGAGGTATTTCACTTTTTTTTTTTTGTAGAGACTATTCAGGAAGC
GACTCTGTATGGAAGGGATGCTGACTTTCCGCGAGGTATCTCACCTCTAT
GCATTTAGTGTTTCTTGCCCGGTCTTTCGGCAATCAACGATCGAAACGAT
TCCTTCAAGGCCATTTGTGTCCCAGGTGATGAGTGCCGGAGGAAAGACAA
TCGCCCCCAATGCTGCTTTCATTCCGGTGTTTCTCCAGATGTCTTCTTTT
CGGATAGACGTGAGCAAACTGCGGGAGGCGGCTGCGCAGCAGGGAGACAT
TCGACAGGCAGTGCGGGATAGGGATGAAACAATCCGAGGTGATCTGTCGA
CCTAGCGACCCACGGTTTCACGGCACGGGGGACGGTTCCGCGACAGCGCG
TCTGACAAAAAATAAGAGGTTTCTGGTTTTGAGTATTACTCTGTCGGTGC
GGACGCAGACTTGGTCGCTTTTTCTAGCCGTGATTTGAGTGCAGCAGGCG
TAGTTCTAACTTGGGACACAGTGTTACGATTGAAAAATAGAGACGTGCAT
TCACCATAACACCCACCCCACCGAGGTAGTGCAAGACGTCCTGCAGCACC
CGTTTTTTATTTTGACGGGAGCTAATCAATTACCCTTTCGCTCTCCCCCC
AGATTTGAGGCAGCGTCTCGAGCTGGAAAGGCGCGAAAGGGGCCAATGGG
GACAAGCCAGGAAGCAACTCCTTTTGGAATTCTGGTACGGTCGACTTTGA
AGCTTTCTCAGCGAGACGTACTCAATGTGACAAAATAGGTACTAGTGATC
TGAACCATATTGCGCTCACCGTGCGGCGTTCGCTGCTCCTCGAACTACAG
ATAGTTCGCGGTGTGGTTGCCTCCCGAAGGGAGATTTTTGGACAAAGTTT
ACGAGCTCTGACATCCTCATCCTCTCGGTCATGCAAAACCCTCGCGGTCA
TGCAAAACCCTCTCACTTTTGCCTACCACCGCCCCCGCTTCGTTCGTTCG
GCTTCCTCCGGGCACATCCAGTGAGGAAGAAAACAAGCTGCGGTCAACGC
TCCAACCCGCTGCCCAGCAAGAGCGACCACAGCCGAAGCAGCAACGTAAC
ACGCGACGACGTCCACAGCAACAGCCCGCGGTCGACCATGCGCTTCCACC
GCGAAGAGATCTTCGTCCGGCGAACGAAAAAACGCTGAGCCGGCATTCGA
CAAGGCATAGCATGAACAGCACTGAACCTTCTGGTGAGAAGGCCGGCGGT
AGTGCCAACAGCTCTTTCAGGGATGGCTTGCGCGTCGATCGTGGCGTGCA
AGAGGAGAAGGGAGCCGGGATCAGTGAAGATGACGGGCTATTCGACTTCG
CGCGGGGGACATATGGAGGGGACAGGGATGGTGCTGACAGCTTCGGTCTA
GGTGATGTGGGTGACCACGCACGGAGAGCCGCGATGGCGGCTGACGACTT
TGGAATGCGGCCAGGGGGCCGATTATCGCAACGAGTTGGCGTTGTGAGAG
TACCTTAA back to topCoding sequence (CDS) from alignment at P-littoralis_Contig148:371869..376526- >mRNA_P-littoralis_Contig148.97.2 ID=mRNA_P-littoralis_Contig148.97.2|Name=mRNA_P-littoralis_Contig148.97.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1911bp|location=Sequence derived from alignment at P-littoralis_Contig148:371869..376526- (Pylaiella littoralis U1_48) TTGTGCGGATCAGGGTCATGGACAACAATAGACCGCGGGAGAGGACAAAG GGAAAACAACCGTGAGTTGTCGTCGTTCGACGTTCTCGGCAGACCGGCGA ACTTCCAAACTACCGGCACCACCGCACTCGACGATGACGATCCACGCCTC GTCGGCTCGCACTTACGCCCGGCGCGGTCTCAGCCTTACTATGCGACGTA TGCTCTCGCAGAGGAAGGATTAGCATCAGGTACCGCTCGGAGCACAGAGT CTGGTCTTGAGCAAGCTCTTGGTCGAGAGCGCAACGATTCCGACGAAGAA CTAGAAGCGATCCGAGGCTCGGTACGCAGCCTGCGTGCTCAGCGGGCTGC CGTGGAGAAGCTGAAGGAGAAGGCGCGGGCAGGGGAGGGTGAAGCGGAGG TGCTCAGGCGCAAGCTTGCGGAGGCGGAAAATCGAACACAGGAGCTGCGG GCGCAGGGAGGGCGAGATGTGGTGCGACGCCTCATGGACGAGGTGACTGA ACTGCGCGCTCGGCTCAAGGCCACTTCTAAAGCCTTTCAGACCCGGGAGA ACAGCGTGGCCGAGCTGCGGGAGGCTGTGGAGAACTTGAGGCTGGATTTA CGCGCCGGGCAGGAAAAGTCGAGAGCGCAGTCTCGAAAGCTCGAACAGCA GGGTCAGGAATCGCAAGAGCAGCGAGTCACCATCAGTCGCTTGGAAGACG CTTGTGCGAGGTGCGAAGAAAGAGCAGAGCTGGCAGAGAAGACGGCGGAG CAGAAGTGCGCGGCGTCCGGGCGTGAGTTAGCATCGCTGTCGGCGCTCTT GAGAGAGGCCAACGCCACGATCGACGCTTCCAAAGGGTCAATGCAAACAG CCTTGGCGAAACAAATGGAAAAGCTCGAAGCAGCGCGCAAGGAAATAGAG TCCTTGCTGTCCCATAAAGGGCAGGCTCAGAAACGCGTGCAGGAACTTAC CTCCCTATGCGAGCGACAGCGATCGAAGCTCGCTGAAGCGGCGCTTCGAG CGAAAGAGATGGAACGCGTGGCATCGGCGGCGAAGGAAGACACCGGACTA GCAGAGGCCCTGGTGGCAAAGCTGAGAGCAGAGCTGTCTACAGTAGACCG GTGCAGGAGGGAAGAGGACGCCGCAGCAACGATAAAGCTTAGGAGCGCCA CCCGCCAAGCGGATGAACTCAAGGCCCAGCTGGCGAGAGTGCAGTCGGAG GCGGCGGAGCAGGCGCGTCAGCTCGTCAGGCATCGCGATGAGATGTCTTC TTTTCGGATAGACGTGAGCAAACTGCGGGAGGCGGCTGCGCAGCAGGGAG ACATTCGACAGGCAGTGCGGGATAGGGATGAAACAATCCGAGATTTGAGG CAGCGTCTCGAGCTGGAAAGGCGCGAAAGGGGCCAATGGGGACAAGCCAG GAAGCAACTCCTTTTGGAATTCTGTGAGGAAGAAAACAAGCTGCGGTCAA CGCTCCAACCCGCTGCCCAGCAAGAGCGACCACAGCCGAAGCAGCAACGT AACACGCGACGACGTCCACAGCAACAGCCCGCGGTCGACCATGCGCTTCC ACCGCGAAGAGATCTTCGTCCGGCGAACGAAAAAACGCTGAGCCGGCATT CGACAAGGCATAGCATGAACAGCACTGAACCTTCTGGTGAGAAGGCCGGC GGTAGTGCCAACAGCTCTTTCAGGGATGGCTTGCGCGTCGATCGTGGCGT GCAAGAGGAGAAGGGAGCCGGGATCAGTGAAGATGACGGGCTATTCGACT TCGCGCGGGGGACATATGGAGGGGACAGGGATGGTGCTGACAGCTTCGGT CTAGGTGATGTGGGTGACCACGCACGGAGAGCCGCGATGGCGGCTGACGA CTTTGGAATGCGGCCAGGGGGCCGATTATCGCAACGAGTTGGCGTTGTGA GAGTACCTTAA back to top
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