mRNA_P-littoralis_Contig1476.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1476.7.1
Unique NamemRNA_P-littoralis_Contig1476.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1476.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1476contigP-littoralis_Contig1476:8860..9358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789695.8920896-CDS-P-littoralis_Contig1476:8859..89431680789695.8920896-CDS-P-littoralis_Contig1476:8859..8943Pylaiella littoralis U1_48CDSP-littoralis_Contig1476 8860..8943 +
1680789695.9011652-CDS-P-littoralis_Contig1476:9277..93581680789695.9011652-CDS-P-littoralis_Contig1476:9277..9358Pylaiella littoralis U1_48CDSP-littoralis_Contig1476 9278..9358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1476.7.1prot_P-littoralis_Contig1476.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1476 8860..9358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1476.7.1

>prot_P-littoralis_Contig1476.7.1 ID=prot_P-littoralis_Contig1476.7.1|Name=mRNA_P-littoralis_Contig1476.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
NPIFAENGEEEPDLEKTLGKIIATQHVETFFISEANPEYKFAVWRESVGS
LNTDY
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mRNA from alignment at P-littoralis_Contig1476:8860..9358+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1476.7.1 ID=mRNA_P-littoralis_Contig1476.7.1|Name=mRNA_P-littoralis_Contig1476.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=499bp|location=Sequence derived from alignment at P-littoralis_Contig1476:8860..9358+ (Pylaiella littoralis U1_48)
AATCCAATCTTCGCGGAGAACGGGGAGGAGGAACCGGATTTGGAGAAGAC
CCTGGGCAAGATCATCGCCACGCAACACGTTGAGGTGATGTTTGATTTTG
GGTAAGGGTTAGCGTGTGACCACGGCAACTGGCCGTGTACGTTGATCAGT
ACGGACAAAGGGGGTGCTGGATGGAGATATCGGGTTAGGTTTTTAGTGTG
AAGACAACAATGCCACAATTCAAACGTTGGTTTGAAGCTGTGGTGCGTTA
TCGGCGTCGGCCAGCAAAGGCTCAACATTGTATTCGTGTCGACAGATAAG
TTTCCCCATGTACCCCGTCATGAACCTCACATGGCAGAGTGACCATCGAA
CGTAACCCCTCTACTACCTCGTTAACACGGTGGGTTCCCCCTCCTTCCAT
CCCGGCGCGAAACATTAGACGTTCTTCATCAGTGAGGCCAACCCGGAGTA
CAAGTTTGCCGTGTGGCGCGAATCCGTCGGGTCTCTCAACACGGACTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1476:8860..9358+

>mRNA_P-littoralis_Contig1476.7.1 ID=mRNA_P-littoralis_Contig1476.7.1|Name=mRNA_P-littoralis_Contig1476.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig1476:8860..9358+ (Pylaiella littoralis U1_48)
AATCCAATCTTCGCGGAGAACGGGGAGGAGGAACCGGATTTGGAGAAGAC
CCTGGGCAAGATCATCGCCACGCAACACGTTGAGACGTTCTTCATCAGTG
AGGCCAACCCGGAGTACAAGTTTGCCGTGTGGCGCGAATCCGTCGGGTCT
CTCAACACGGACTAC
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