mRNA_P-littoralis_Contig147.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig147.9.1
Unique NamemRNA_P-littoralis_Contig147.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig147.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig147contigP-littoralis_Contig147:46485..47019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size482
Hectar predicted targeting categoryother localisation
Exons2
Cds size372
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789691.0128105-UTR-P-littoralis_Contig147:46484..465241680789691.0128105-UTR-P-littoralis_Contig147:46484..46524Pylaiella littoralis U1_48UTRP-littoralis_Contig147 46485..46524 +
1680789691.0423024-UTR-P-littoralis_Contig147:46949..470191680789691.0423024-UTR-P-littoralis_Contig147:46949..47019Pylaiella littoralis U1_48UTRP-littoralis_Contig147 46950..47019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789691.025401-CDS-P-littoralis_Contig147:46524..467721680789691.025401-CDS-P-littoralis_Contig147:46524..46772Pylaiella littoralis U1_48CDSP-littoralis_Contig147 46525..46772 +
1680789691.034055-CDS-P-littoralis_Contig147:46825..469491680789691.034055-CDS-P-littoralis_Contig147:46825..46949Pylaiella littoralis U1_48CDSP-littoralis_Contig147 46826..46949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig147.9.1prot_P-littoralis_Contig147.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig147 46525..46949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig147.9.1

>prot_P-littoralis_Contig147.9.1 ID=prot_P-littoralis_Contig147.9.1|Name=mRNA_P-littoralis_Contig147.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=124bp
MNRFSAPDESASLLVTQISRRCCPPVAEKHLVVHIFLPLGVGIAFVCRWP
DGSNTSGKQTRQQGALHQPKKCGYVGTAQCTYRHICTAVCYCCCGREVSH
SSTAVDGGIIHSSTAQYTNAAVL*
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mRNA from alignment at P-littoralis_Contig147:46485..47019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig147.9.1 ID=mRNA_P-littoralis_Contig147.9.1|Name=mRNA_P-littoralis_Contig147.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=535bp|location=Sequence derived from alignment at P-littoralis_Contig147:46485..47019+ (Pylaiella littoralis U1_48)
CGTACACAAACGATTCTGCTACATCATTTTGGGATTTAGGATGAACAGAT
TCTCCGCCCCCGATGAATCTGCATCTCTTCTTGTGACCCAGATATCACGG
CGGTGCTGCCCGCCAGTTGCTGAAAAGCACCTTGTTGTACACATATTCCT
GCCCCTTGGTGTAGGGATTGCTTTTGTCTGTCGCTGGCCCGATGGTTCAA
ACACATCAGGTAAACAAACAAGGCAGCAGGGAGCCTTGCACCAACCGAAA
AAGTGTGGGTACGTGGGCACAGCGCAGTGTACTTACCGGTAGCAGATATG
CAGACAGACCAAAACCCTCGCAGTACAGCAGTGTATATCAGACATATTTG
TACAGCAGTCTGCTACTGCTGCTGTGGCCGGGAGGTATCACACAGCAGTA
CTGCTGTAGACGGAGGCATCATACACAGCAGCACAGCGCAGTACACAAAT
GCAGCAGTATTATAGTACAGGTATGCCGGTCACACGTCGTGAGATCGTAA
AAAATACTTCGAAGTACAAGGTGGGAGGATTGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig147:46485..47019+

>mRNA_P-littoralis_Contig147.9.1 ID=mRNA_P-littoralis_Contig147.9.1|Name=mRNA_P-littoralis_Contig147.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=372bp|location=Sequence derived from alignment at P-littoralis_Contig147:46485..47019+ (Pylaiella littoralis U1_48)
ATGAACAGATTCTCCGCCCCCGATGAATCTGCATCTCTTCTTGTGACCCA
GATATCACGGCGGTGCTGCCCGCCAGTTGCTGAAAAGCACCTTGTTGTAC
ACATATTCCTGCCCCTTGGTGTAGGGATTGCTTTTGTCTGTCGCTGGCCC
GATGGTTCAAACACATCAGGTAAACAAACAAGGCAGCAGGGAGCCTTGCA
CCAACCGAAAAAGTGTGGGTACGTGGGCACAGCGCAGTGTACTTACCGAC
ATATTTGTACAGCAGTCTGCTACTGCTGCTGTGGCCGGGAGGTATCACAC
AGCAGTACTGCTGTAGACGGAGGCATCATACACAGCAGCACAGCGCAGTA
CACAAATGCAGCAGTATTATAG
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