mRNA_P-littoralis_Contig147.40.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A6H5KX44_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX44_9PHAE) HSP 1 Score: 328 bits (842), Expect = 1.060e-109 Identity = 150/202 (74.26%), Postives = 177/202 (87.62%), Query Frame = 3
Query: 60 SRGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQA---AEQEQ 656
SRGWT GE++LR+PLDNWDGY EMLRQ+PV VKACTSGIVYA+GD VAQ++EGTEL++I R+RV+RSA+AGLLLHGPLSHVWY VCEGLFD VGWN+YWWV PKI+TDQL+WGP WNA+YI+ +L +DS I A+ STA+PL++AG+RLWPLAH+VTYGL+P ENRLLWVDAVEIVWVTILS QAAEQA AEQE+
Sbjct: 140 SRGWTIGEYILRVPLDNWDGYSEMLRQSPVQVKACTSGIVYALGDLVAQSMEGTELAEIERQRVVRSAMAGLLLHGPLSHVWYNVCEGLFDIVGWNEYWWVPAPKIITDQLLWGPAWNAVYIAFLGVLNKDSSAVIWEAITSTALPLVIAGIRLWPLAHVVTYGLVPKENRLLWVDAVEIVWVTILSSQAAEQARSPAEQEE 341
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A836C8Z2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Z2_9STRA) HSP 1 Score: 288 bits (736), Expect = 5.720e-94 Identity = 131/203 (64.53%), Postives = 158/203 (77.83%), Query Frame = 3
Query: 45 STQDDSRGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQAAEQE 653
ST D SRGWT E LLRLP DNW GY++MLR +PVLVKA TSG VYA+GDW AQT GT L+++ R RV RSA AG + HGPLSH WY VCE LF A+GWN WWV +PKI+TDQL+WGP+WNA Y+ + +++RD+ + AV ST VPL+V+GL+LWP HLVTYGLIP ENRLLWVD VEI+WVTILSKQAA++A +
Sbjct: 82 STLDASRGWTAEEVLLRLPQDNWQGYMDMLRSHPVLVKAVTSGTVYALGDWTAQTTNGTPLAELDRWRVARSAAAGFVGHGPLSHCWYEVCEALFSAIGWNGAWWVTLPKIMTDQLVWGPIWNATYVVLVGLMKRDAPARVWEAVTSTMVPLVVSGLKLWPAVHLVTYGLIPPENRLLWVDTVEILWVTILSKQAADEAKRDQ 284
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A7S1VV68_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VV68_9STRA) HSP 1 Score: 238 bits (607), Expect = 4.450e-74 Identity = 113/200 (56.50%), Postives = 140/200 (70.00%), Query Frame = 3
Query: 51 QDDSRGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQAAEQ 650
QD RGWT E L R+ LDNW Y E+L P+ KA TS VYA+GD +AQ EG + ++ R R LRS LAGL+ HGPLSHVWY V E LF A+ WN+ WW PK++ DQL WGP WN +YI + I++ +S++T+ + T VPLIV+GL+LWPLAH VTYGLIP ENRLLWVD VEI WVTIL+ QA+ AE+
Sbjct: 131 QDMMRGWTAAESLTRISLDNWADYSEILNAAPLQTKAITSATVYAIGDIIAQRTEGVSMGELDRPRTLRSLLAGLIGHGPLSHVWYDVSEELFTALHWNE-WWGFFPKVMVDQLTWGPFWNNMYIVLLGIMKMESWETMWGDIKRTTVPLIVSGLKLWPLAHCVTYGLIPVENRLLWVDVVEIAWVTILASQASGAGAEE 329
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: W7TQH1_9STRA (Peroxisomal membrane 22 kDa (Mpv17 pmp22) family protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQH1_9STRA) HSP 1 Score: 237 bits (604), Expect = 1.240e-72 Identity = 111/198 (56.06%), Postives = 137/198 (69.19%), Query Frame = 3
Query: 63 RGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQAAEQEQ 656
RGWT E R+PLDNWDGY+ +L +PV VKA TSG VY +GD VAQ EG L +I R RV RS +AG + HGPLSH WYGV E F +GW WW PKI DQL+W P+WN YI + ++R++ I V ST+ LI +GL+LWPLAH+VTYG+IP ENRLLWVD VEI+WVTILS++AA AE+ +
Sbjct: 152 RGWTPAEIFTRIPLDNWDGYMNVLSLHPVFVKAVTSGSVYTLGDGVAQLYEGKTLGEIDRGRVARSGIAGFVGHGPLSHWWYGVSEDFFGWLGWEG-WWTTFPKITVDQLVWSPIWNGCYIFLLGAMKREALGEIVNTVKSTSFSLITSGLKLWPLAHVVTYGVIPVENRLLWVDLVEILWVTILSREAANADAEKAE 348
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: B7G9T7_PHATC (Predicted protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9T7_PHATC) HSP 1 Score: 229 bits (585), Expect = 2.190e-72 Identity = 104/196 (53.06%), Postives = 137/196 (69.90%), Query Frame = 3
Query: 60 SRGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQAAE 647
SRGWT+ E R+P+D W GY ++L +PV KA TS VY +GD++AQ +G + D+ R R++RS LAGL+ HGPLSH WY VC+ FD V WW PK+V DQ WGP+WN YI + +++ + +TI + + T VPLI++GL+LWPLAH VTYGL+P ENRLLWVDAVEI+WVTIL+ AAE A+
Sbjct: 26 SRGWTSEELAARIPMDVWAGYSQVLENSPVATKAATSATVYTIGDFIAQRTQGAAMGDLDRGRIVRSMLAGLIGHGPLSHFWYNVCDHFFDNVLHWTAWWSFFPKVVVDQTTWGPIWNNTYILLLGLMKLEKLETIWSDMKRTTVPLILSGLKLWPLAHCVTYGLVPVENRLLWVDAVEILWVTILATTAAEAHAD 221
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A6V2I5L6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2I5L6_9STRA) HSP 1 Score: 218 bits (556), Expect = 1.730e-66 Identity = 100/191 (52.36%), Postives = 128/191 (67.02%), Query Frame = 3
Query: 60 SRGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAA 632
+RGWT E R+P+DNW GY L +P+ KA TS VY +GD +AQ EG + ++ R R++RS LAGL+ HGP+SH WY E FD V WW PK+ DQ WGPLWN YI + +++ DS++ I + T +PLIV+GL+LWPLAH VTYGLIP ENRLLWVD VEI+WVTIL+ QA+
Sbjct: 125 TRGWTPEEIATRIPIDNWIGYSSTLHNSPISTKAITSASVYTIGDVIAQKTEGAGMGELDRPRIIRSLLAGLIGHGPMSHFWYEYSEDFFDNVLHLTEWWSFFPKVAIDQATWGPLWNNTYILLLGLMKLDSWERIWGDMKRTTIPLIVSGLKLWPLAHCVTYGLIPVENRLLWVDLVEIIWVTILANQAS 315
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A7S2LHE2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LHE2_9STRA) HSP 1 Score: 218 bits (555), Expect = 2.060e-66 Identity = 101/198 (51.01%), Postives = 132/198 (66.67%), Query Frame = 3
Query: 63 RGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAV-GWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQAAEQE 653
RGW+T E R+PLDNW+ Y +L P+ K+ TS VYA+GD +AQ EGTE+ ++ R R+ RS AGL+ HGPLSH WY + E F+ V W D WW +PK+V DQ +WGP WN YI + +++ + A + T +PL+V+GL+LWPLAH +TYGL+P ENRLLWVD VEIVWVTIL+ QAA E
Sbjct: 132 RGWSTEEIAYRVPLDNWNSYNAILAAAPIQTKSITSATVYAIGDTIAQRTEGTEIGELDRGRIGRSLAAGLIGHGPLSHFWYQISEDFFNNVLMWTD-WWSFIPKVVIDQTLWGPFWNNSYIVLLGVMQFQKPSQVWADIKRTTIPLVVSGLKLWPLAHCITYGLVPVENRLLWVDMVEIVWVTILATQAAGSVESNE 328
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A7S2HYH1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HYH1_9STRA) HSP 1 Score: 218 bits (554), Expect = 3.270e-66 Identity = 100/192 (52.08%), Postives = 127/192 (66.15%), Query Frame = 3
Query: 60 SRGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAV-GWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAA 632
+RGWT E R+P+DNW Y +L P+ KA TS VY +GD +AQ EG + D+ R R+LRS LAGL+ HGPLSH WY E FD V W + WW PK++ DQ WGP WN YI + ++ D ++ I + T +PL+V+GL+LWPLAH VTYGL+P ENRLLWVD VEIVWVTIL+ QA+
Sbjct: 126 TRGWTPEEVAARIPMDNWSSYSAVLEDAPISTKAITSASVYTIGDVIAQRTEGNSMGDLDRPRILRSLLAGLIGHGPLSHFWYDYSEAFFDDVLKWTE-WWSFFPKVILDQTTWGPFWNNTYIILLGAMKLDKWENIWGDIKRTTIPLVVSGLKLWPLAHCVTYGLVPVENRLLWVDLVEIVWVTILATQAS 316
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A7S2KHW9_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KHW9_9STRA) HSP 1 Score: 214 bits (545), Expect = 1.010e-64 Identity = 99/198 (50.00%), Postives = 131/198 (66.16%), Query Frame = 3
Query: 60 SRGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLFDAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQAAEQE 653
+RGWT E LR+PLDNW Y +L P+ KA TS VY +GD +AQ EG ++ + R R+LRSALAGL+ HGP+SHVWY V E FD + WW VPKIV DQL++GP+WN YI + I++ I + + +PL+++GL+LWP H +TYGLIP ENRLLWVD VEI+WVTIL+ +A +E +
Sbjct: 147 TRGWTAEEIALRIPLDNWRSYTNILSMAPIETKAVTSATVYTIGDIIAQKTEGLDIGKLDRGRILRSALAGLIGHGPMSHVWYHVSEDFFDNILHLHAWWDFVPKIVVDQLVFGPIWNNSYILLLGIMQLQKPGQIFGDMKRSTIPLLISGLKLWPFVHCITYGLIPVENRLLWVDLVEILWVTILANEANANNSEAQ 344
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Match: A0A7S2PLY5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PLY5_9STRA) HSP 1 Score: 213 bits (541), Expect = 1.810e-64 Identity = 102/195 (52.31%), Postives = 126/195 (64.62%), Query Frame = 3
Query: 63 RGWTTGEFLLRLPLDNWDGYIEMLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLLHGPLSHVWYGVCEGLF-DAVGWNDYWWVAVPKIVTDQLIWGPLWNAIYISVTSILERDSFDTIKAAVISTAVPLIVAGLRLWPLAHLVTYGLIPTENRLLWVDAVEIVWVTILSKQAAEQAA 644
RGWT E +R+P+DNW Y +L P+ KA TS VY +GD +AQ EG D+ R RVLRS LAG + HGPLSHVWY E +F + W + WW PK+ DQ+ WGP WN YI + I++ I + T VPLIV+GL+LWPLAH VTYGL+P ENRLLWVD VEIVWVTIL+ AAE ++
Sbjct: 116 RGWTAAEMAVRIPVDNWASYESILHAAPISTKAVTSATVYTIGDIIAQRTEGKSYGDLDRWRVLRSLLAGCIGHGPLSHVWYDWSEDVFTEQFHWTE-WWSFFPKVAIDQMTWGPFWNNTYILLLGIMQFRPLKDIWTEIKETTVPLIVSGLKLWPLAHCVTYGLVPVENRLLWVDLVEIVWVTILASAAAEASS 309 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig147.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig147.40.1 >prot_P-littoralis_Contig147.40.1 ID=prot_P-littoralis_Contig147.40.1|Name=mRNA_P-littoralis_Contig147.40.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=177bp MLRQNPVLVKACTSGIVYAVGDWVAQTIEGTELSDIRRRRVLRSALAGLLback to top mRNA from alignment at P-littoralis_Contig147:248450..251230- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig147.40.1 ID=mRNA_P-littoralis_Contig147.40.1|Name=mRNA_P-littoralis_Contig147.40.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2781bp|location=Sequence derived from alignment at P-littoralis_Contig147:248450..251230- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig147:248450..251230- >mRNA_P-littoralis_Contig147.40.1 ID=mRNA_P-littoralis_Contig147.40.1|Name=mRNA_P-littoralis_Contig147.40.1|organism=Pylaiella littoralis U1_48|type=CDS|length=531bp|location=Sequence derived from alignment at P-littoralis_Contig147:248450..251230- (Pylaiella littoralis U1_48)back to top |