mRNA_P-littoralis_Contig146.84.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.84.1
Unique NamemRNA_P-littoralis_Contig146.84.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig146.84.1 vs. uniprot
Match: A0A6H5JGH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.420e-7
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:    1 KLPLLIGGATTSKMHTAVKISPQYASPEVGV 93
            KLPLLIGGATTSKMHTAVKISPQYASPE  V
Sbjct:  191 KLPLLIGGATTSKMHTAVKISPQYASPETPV 221
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BLAST of mRNA_P-littoralis_Contig146.84.1 vs. uniprot
Match: D7FUT0_ECTSI (Methionine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT0_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.700e-7
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:    1 KLPLLIGGATTSKMHTAVKISPQYASPEVGV 93
            KLPLLIGGATTSKMHTAVKISPQYASPE  V
Sbjct:  813 KLPLLIGGATTSKMHTAVKISPQYASPETPV 843
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BLAST of mRNA_P-littoralis_Contig146.84.1 vs. uniprot
Match: A0A6H5KHJ8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.330e-7
Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 2 
Query:  308 DRKDSDHNLVLANIRLLDRVAPNRRVRDTSSSSTSASIDLQRLMADPQLRKEFKRQ 475
            D KDSDHNLVL  +RLL RVAPNRRVR  S SS    I+L+RL  D  LR  F+ +
Sbjct:   96 DFKDSDHNLVLTTVRLLPRVAPNRRVRGNSGSSR-IRINLERLTKDKHLRATFQNR 150
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BLAST of mRNA_P-littoralis_Contig146.84.1 vs. uniprot
Match: A0A7S1HQR1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis cordata TaxID=118079 RepID=A0A7S1HQR1_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 6.420e-6
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:    1 KLPLLIGGATTSKMHTAVKISPQYASPEVGV 93
            KLPLLIGGATTSKMHTAVK++PQY+ P + V
Sbjct:   55 KLPLLIGGATTSKMHTAVKLTPQYSGPIIYV 85
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BLAST of mRNA_P-littoralis_Contig146.84.1 vs. uniprot
Match: A0A8J2X778_9STRA (Methionine synthase n=5 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X778_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.050e-6
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    1 KLPLLIGGATTSKMHTAVKISPQYASPEVGVSWVYRIMCVFALSSRACVDSILNSHVRP 177
            K+PLLIGGATTSKMHTAVK++PQYAS E  V     I  + A  +   V S+L+  ++P
Sbjct: 1712 KVPLLIGGATTSKMHTAVKVAPQYASDEHPV-----IHVLDASRAVTVVSSLLSDELKP 1765
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BLAST of mRNA_P-littoralis_Contig146.84.1 vs. uniprot
Match: A0A2G6J2W7_9PROT (Methionine synthase n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2G6J2W7_9PROT)

HSP 1 Score: 55.5 bits (132), Expect = 1.050e-5
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:    1 KLPLLIGGATTSKMHTAVKISPQYASPEVGV 93
            KLPLLIGGATTSK HTAVKI+PQYASP V V
Sbjct:  853 KLPLLIGGATTSKKHTAVKIAPQYASPTVHV 883
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BLAST of mRNA_P-littoralis_Contig146.84.1 vs. uniprot
Match: A0A396U013_9GAMM (Methionine synthase n=2 Tax=Colwelliaceae TaxID=267889 RepID=A0A396U013_9GAMM)

HSP 1 Score: 55.1 bits (131), Expect = 1.420e-5
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:    1 KLPLLIGGATTSKMHTAVKISPQYASPEVGVSWVYRIMCVFALSSRACVDSILNSHVRP 177
            +LPLLIGGATTSK HTAVKI PQY  P V VS   R + V        V S+L+  +RP
Sbjct:  828 ELPLLIGGATTSKAHTAVKIEPQYEHPVVYVSNASRSVSV--------VSSLLSDELRP 878
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BLAST of mRNA_P-littoralis_Contig146.84.1 vs. uniprot
Match: F2TYS4_SALR5 (Methionine synthase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TYS4_SALR5)

HSP 1 Score: 55.1 bits (131), Expect = 1.420e-5
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:    1 KLPLLIGGATTSKMHTAVKISPQYASPEVGV 93
            KLPLLIGGATTSKMHTAVKI+P+Y+SP V V
Sbjct:  851 KLPLLIGGATTSKMHTAVKIAPKYSSPTVHV 881
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BLAST of mRNA_P-littoralis_Contig146.84.1 vs. uniprot
Match: A0A7S3JTL8_9STRA (Methionine synthase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JTL8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.430e-5
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    1 KLPLLIGGATTSKMHTAVKISPQYASPEVGVSWVYRIMCVFALSSRACVDSILNSHVRP 177
            ++PLLIGGATTSKMHTAVKI+PQYAS E  V     I  + A  +   V S+LN+  +P
Sbjct:  954 QVPLLIGGATTSKMHTAVKIAPQYASDEHPV-----IHVLDASRAVTVVSSLLNADDKP 1007
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BLAST of mRNA_P-littoralis_Contig146.84.1 vs. uniprot
Match: A0A7S1TC03_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TC03_9RHOD)

HSP 1 Score: 54.7 bits (130), Expect = 1.770e-5
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:    1 KLPLLIGGATTSKMHTAVKISPQYASPEVGV 93
            K+PLLIGGATTSKMHTAVKISPQY+ P + V
Sbjct:  268 KIPLLIGGATTSKMHTAVKISPQYSGPVIHV 298
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGH7_9PHAE3.420e-793.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUT0_ECTSI3.700e-793.55Methionine synthase n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KHJ8_9PHAE4.330e-758.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1HQR1_9EUKA6.420e-677.42Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A8J2X778_9STRA8.050e-652.54Methionine synthase n=5 Tax=Pelagomonas calceolata... [more]
A0A2G6J2W7_9PROT1.050e-587.10Methionine synthase n=2 Tax=Proteobacteria bacteri... [more]
A0A396U013_9GAMM1.420e-554.24Methionine synthase n=2 Tax=Colwelliaceae TaxID=26... [more]
F2TYS4_SALR51.420e-583.87Methionine synthase n=1 Tax=Salpingoeca rosetta (s... [more]
A0A7S3JTL8_9STRA1.430e-554.24Methionine synthase n=1 Tax=Aureoumbra lagunensis ... [more]
A0A7S1TC03_9RHOD1.770e-580.65Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:307959..308713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size543
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789685.6006637-UTR-P-littoralis_Contig146:307958..3079971680789685.6006637-UTR-P-littoralis_Contig146:307958..307997Pylaiella littoralis U1_48UTRP-littoralis_Contig146 307959..307997 +
1680789685.6318502-UTR-P-littoralis_Contig146:308485..3087131680789685.6318502-UTR-P-littoralis_Contig146:308485..308713Pylaiella littoralis U1_48UTRP-littoralis_Contig146 308486..308713 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789685.6104236-CDS-P-littoralis_Contig146:307997..3082641680789685.6104236-CDS-P-littoralis_Contig146:307997..308264Pylaiella littoralis U1_48CDSP-littoralis_Contig146 307998..308264 +
1680789685.6201048-CDS-P-littoralis_Contig146:308476..3084851680789685.6201048-CDS-P-littoralis_Contig146:308476..308485Pylaiella littoralis U1_48CDSP-littoralis_Contig146 308477..308485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.84.1prot_P-littoralis_Contig146.84.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 307998..308485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.84.1

>prot_P-littoralis_Contig146.84.1 ID=prot_P-littoralis_Contig146.84.1|Name=mRNA_P-littoralis_Contig146.84.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
MHTAVKISPQYASPEVGVSWVYRIMCVFALSSRACVDSILNSHVRPCLPI
HVYTSWTLSCRTWRFVGELTRLFGENNFFDIESNTRAHIRS*
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mRNA from alignment at P-littoralis_Contig146:307959..308713+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.84.1 ID=mRNA_P-littoralis_Contig146.84.1|Name=mRNA_P-littoralis_Contig146.84.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=755bp|location=Sequence derived from alignment at P-littoralis_Contig146:307959..308713+ (Pylaiella littoralis U1_48)
AAGCTGCCGCTGCTCATCGGCGGCGCGACGACGTCTAAAATGCACACCGC
TGTCAAGATCAGCCCGCAGTACGCCTCTCCGGAGGTGGGTGTATCATGGG
TGTATCGTATCATGTGTGTTTTCGCCCTTTCGTCACGTGCGTGTGTGGAT
AGCATCCTTAATAGCCATGTCCGTCCCTGTTTGCCCATCCACGTATATAC
GTCCTGGACGCTTTCATGTCGTACTTGGAGATTCGTTGGAGAGTTGACTC
GCCTCTTTGGTGAAAATAACTTCTTTGATATAGAGTCAAACACGCGCGCA
CACATACACAAACACACACACACACACACACACACACTGGTGGAATTTGC
AGCAAGCTGTAGGCCTTCCATCTTGGACACCTTTTTCTGCACACCCAAAC
GCGGGATATCAAACTCTTTCGAAAGCTCCAACCGCGGGAAGGGAGAATAC
AGACTCGATTACATCCTGACCCGCCAGGCAGACCTTCGGTTGGTGCGCAA
CGTCTCTGTACGGCGCATCGATCGTAAGGACTCCGACCACAACCTCGTCC
TTGCCAACATCCGCTTGCTTGACCGAGTGGCACCGAATCGACGTGTGAGG
GATACCAGCAGCAGCAGTACCTCCGCTAGCATTGATCTACAACGGTTGAT
GGCGGACCCCCAGCTTCGGAAAGAGTTCAAGAGACAGAATTTCCCCCATC
ACGGAAGGTGTGAATGTGGATGAGCTCGCTTCGGCCTTGACGACTGCTGT
GATGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:307959..308713+

>mRNA_P-littoralis_Contig146.84.1 ID=mRNA_P-littoralis_Contig146.84.1|Name=mRNA_P-littoralis_Contig146.84.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig146:307959..308713+ (Pylaiella littoralis U1_48)
ATGCACACCGCTGTCAAGATCAGCCCGCAGTACGCCTCTCCGGAGGTGGG
TGTATCATGGGTGTATCGTATCATGTGTGTTTTCGCCCTTTCGTCACGTG
CGTGTGTGGATAGCATCCTTAATAGCCATGTCCGTCCCTGTTTGCCCATC
CACGTATATACGTCCTGGACGCTTTCATGTCGTACTTGGAGATTCGTTGG
AGAGTTGACTCGCCTCTTTGGTGAAAATAACTTCTTTGATATAGAGTCAA
ACACGCGCGCACACATACGATCGTAA
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