mRNA_P-littoralis_Contig146.60.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.60.1
Unique NamemRNA_P-littoralis_Contig146.60.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig146.60.1 vs. uniprot
Match: A0A6H5KFN3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN3_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 6.080e-37
Identity = 65/120 (54.17%), Postives = 89/120 (74.17%), Query Frame = 3 
Query:  492 VDFIFPGRFRWEEWEFKDGDKKGQVDKGKAREKILGWWKDMRSEYRVAVKNVGKSGEHAEHKWSFCGNKFYVMLMIDWYQVRGGHKANDHCQQYFKVKLDEDTGSAFSSLSTEFEQASSD 851
            +D+  P +   EEW FK+G +KG++DK +AREK+ GWW DMR+E R A K   KSG +AEH WSFC  K YV+LM+DWY++RGG  AN++C ++F V+L E+ G AF++LS E EQ+SSD
Sbjct:    8 LDYDDPAKKWREEWTFKEGSRKGELDKARAREKVKGWWTDMRAECRDAKKKKEKSGNNAEHYWSFCNQKLYVLLMMDWYELRGGDSANEYCARHFSVRLSEEDGEAFNTLSMEDEQSSSD 127
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BLAST of mRNA_P-littoralis_Contig146.60.1 vs. uniprot
Match: A0A6H5K9P5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9P5_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 5.860e-34
Identity = 75/156 (48.08%), Postives = 102/156 (65.38%), Query Frame = 3 
Query:  444 GSTARSDDDNLMSPGRVDFIFPGRFRWEEWEFKDGDKKGQVDKGKAREKILGWWKDMRSEYRVAVKNVGKSGEHAEHKWSFCGNKFYVMLMIDWYQVRGGHKANDHCQQYFKVKLDEDTGSAFSSLSTEFEQASSDSDDDTMSCGK---RKLRARG 902
            GSTA        +   +D+  P +   EEW FK+G +KG++DK +AREK+ GWW DMR++   A K   KSG +AEH WSFC  K  V+LM+DWY++RGG  AN+HC +YF V+L E+ G AF++LS E EQ+SSDS +     GK   RK+R +G
Sbjct:  266 GSTAPGVPKMWEALQSLDYDDPAKKWREEWTFKEGSRKGELDKARAREKVKGWWMDMRAD-PDAKKKKEKSGNNAEHYWSFCNQKLNVLLMMDWYELRGGDSANEHCARYFSVRLSEEDGEAFNTLSMEDEQSSSDSGEPPXPKGKPRARKVREKG 420
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BLAST of mRNA_P-littoralis_Contig146.60.1 vs. uniprot
Match: A0A6H5KAH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAH1_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.330e-26
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 3 
Query:  612 MRSEYRVAVKNVGKSGEHAEHKWSFCGNKFYVMLMIDWYQVRGGHKANDHCQQYFKVKLDEDTGSAFSSLSTEFEQASSDSDDDTMSCGK---RKLRARGGG 908
            MR+E+R+A KN  KSG +AEH WSFC  K YV+LM+DWY++RGG  AN+HC +Y  VKL+E+ G AF++LS E +Q+SSDSD+      K   RK R +GGG
Sbjct:    1 MRAEFRIAKKNKEKSGNNAEHYWSFCNQKLYVLLMMDWYELRGGDSANEHCARYLSVKLNEEDGEAFNTLSMEDQQSSSDSDEPLAPKRKPRERKDREKGGG 102
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BLAST of mRNA_P-littoralis_Contig146.60.1 vs. uniprot
Match: A0A6H5J6L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6L5_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.400e-23
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 3 
Query:  612 MRSEYRVAVKNVGKSGEHAEHKWSFCGNKFYVMLMIDWYQVRGGHKANDHCQQYFKVKLDEDTGSAFSSLSTEFEQAS 845
            MR+E+R+A KN  KSG +AEH WSFC  + YV+LM+DWY++RGG  AN+HC +YF V+L E+ G AF++LS E EQ+S
Sbjct:    1 MRAEFRIANKNKEKSGNNAEHHWSFCNQRLYVLLMMDWYELRGGDSANEHCARYFSVRLSEEDGEAFNTLSMEDEQSS 78
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KFN3_9PHAE6.080e-3754.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9P5_9PHAE5.860e-3448.08Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAH1_9PHAE1.330e-2654.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J6L5_9PHAE2.400e-2357.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:193911..196939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1307
Hectar predicted targeting categoryother localisation
Exons2
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789687.1394053-UTR-P-littoralis_Contig146:193910..1942791680789687.1394053-UTR-P-littoralis_Contig146:193910..194279Pylaiella littoralis U1_48UTRP-littoralis_Contig146 193911..194279 -
1680789687.169402-UTR-P-littoralis_Contig146:196463..1969391680789687.169402-UTR-P-littoralis_Contig146:196463..196939Pylaiella littoralis U1_48UTRP-littoralis_Contig146 196464..196939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789687.1489413-CDS-P-littoralis_Contig146:194279..1945881680789687.1489413-CDS-P-littoralis_Contig146:194279..194588Pylaiella littoralis U1_48CDSP-littoralis_Contig146 194280..194588 -
1680789687.1571789-CDS-P-littoralis_Contig146:196310..1964631680789687.1571789-CDS-P-littoralis_Contig146:196310..196463Pylaiella littoralis U1_48CDSP-littoralis_Contig146 196311..196463 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.60.1prot_P-littoralis_Contig146.60.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 194280..196463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.60.1

>prot_P-littoralis_Contig146.60.1 ID=prot_P-littoralis_Contig146.60.1|Name=mRNA_P-littoralis_Contig146.60.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=154bp
MSPGRVDFIFPGRFRWEEWEFKDGDKKGQVDKGKAREKILGWWKDMRSEY
RVAVKNVGKSGEHAEHKWSFCGNKFYVMLMIDWYQVRGGHKANDHCQQYF
KVKLDEDTGSAFSSLSTEFEQASSDSDDDTMSCGKRKLRARGGGKRTLKR
RRP*
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mRNA from alignment at P-littoralis_Contig146:193911..196939-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.60.1 ID=mRNA_P-littoralis_Contig146.60.1|Name=mRNA_P-littoralis_Contig146.60.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3029bp|location=Sequence derived from alignment at P-littoralis_Contig146:193911..196939- (Pylaiella littoralis U1_48)
ACATACAGCCAGCACTGCCCGAAGGAGTTGCAAAATGTGGGAGACACTTC
AGTCGCTCGACTACAAAGCGCCAACTAAAAAGTGATGTGGAACACGCGTA
TTATGTTGTACGAGTATCGTGCATGGGGGTTGATGGTATGATGCGTACTG
GATATCTAGAAGCTACAGCAGTAGCATTGTTGTATGCCTCCAATGATATG
ATGCGTACTGTATGTAGTGTTTCGCTGCTGTGCAAGCTCTCACAGAGCTG
TGGCTTTTGTAGCTGTTTCTGGTGCTGTGTTGTCATCTTTGCCGTTGTTG
TTACGCTGGTGGTGGTGGTGGTGGTGGTGGTGCTGTCTGTTGTGTCTGTG
GTGATGCGCGTGCTCTGCCGTTCCTTTTTTGTTTTTCCTGGATGTTTCGA
TGCTGGTGGAAAATCATGTTGATTCGACACGTACATATCGCACGGCAGCA
CCGCTCGTAGTGACGACGATAATTTGATGTCGCCTGGCCGCGTGGACTTT
ATCTTTCCCGGTCGTTTCAGGTGGGAGGAGTGGGAGTTCAAGGATGGCGA
TAAGAAGGGTCAGGTGGACAAGGGCAAAGCCCGCGAGAAGATACTTGGAT
GGTGGAAGGACATGCGGTCGGAGTACAGGGTGAGAGGCGAGGGTGTGAAG
ACGGTGTGTGCAAACGTGTGTTATTTTTTGCCCCCCTTCCCCCCCGACCT
ACCCCCCTCTCTTTCTGGTTGCGGTGTGTGCGTCGGGTATACTTCGGGCT
ACCTTACGAGCTTTGTTTCATCATACACCGCTGTATACCATTTTTTCATG
GTTGCCGTTGATGTGTAAGTATTACCCTCCATTGTTTTCTCACAAGTCCA
CACAACAGCAGCCCCCCTCTCTGTTTGTTTTTTGTGCACATTTCCAGCCC
TTGTCGGCCTTGAAGCCGGCGTGTATACTTTGTTTTCGGCACGTACGCAA
CCTTAGGACCTGCCTGCAGAGAACAGAAATGAAACGGAGCCACCACTCAC
TACAAATCCAGTACAGGCAGCAGCAGAACAGCGGTATATTGACCTCCACT
ACATATATTTTCTCACAACTCCGTATCACCAGCAGTACACCCCCGCCCCC
TCCCTCTGTTTTTTGTGCGATATTTCCAGCCCTTGTCGGCCTGGGAGCGG
ATTAGATGTTTGTTTCTCTGAACGTGTACAGCTTAAAGACCTGTTTTCAA
AACAGAAATAAACGCTGTCACCTCTCAGTAGAGATCCAGTGACAGGCAGC
TGCAGGACAGCGGTACATCGACGTCCACATTTTTTTTTCTCACAACTCCT
CAACAACAGCAGACCACCCCCCTCCCTCTGTTTTTTGTGCGATATTTCCA
GCCCTTGTCGGCCTGGAAGCGGAGTAGATGTTTGTTTTTCCTGCACGTGC
ACAAAGTTTGGACCTGTCTGCTAATCAAAACAAAAAGTAGCCACCATCAG
TAGAGATCCAGTGACAGGCAGCTGCAGGACGGCGGTACATCGACGTCCAT
ATTTTTTTTCTCACAACTCCCCAACAACAGCAGACCCCCCCCCACCCTCT
CTCTGTTTTTTGTGCGATATTTCCAGCCCTTGTCGACCTGCAAGCGGTAG
ATTATATTTTCATGCACGTGCACAACGTTTGGACCTTTCTGCAAATCAGA
AATGAAACATAGCCACCACTCAGTAGAGATCTAGTGATAGGTAGCTGCAG
GACGGCGGTACATCGACGTCCATATTTGTTTTCTCACAACTCCCCAACAA
CAGAAGCCCCCCCCCCCACCCTCTTTTTGTTTTTTGTGCGATATTTCCAG
CCCTTGTCGGCCTGCAAGCGGTAGATTATATTTTCATGCACGTGCACGTT
TGGACCTGTCTGCAAAACATAAATGACACGTAGCCACCACTCAGTAGAGA
TCCAGTGACAGGCAGCTGCAGGACGGCGGTACATCGACGTCCATATTTGT
TTTCTCACAACTCCCCAACAACAGCAGACCCCCCCCCACCCTCTCTCTGT
TTTTTGTGCGATATTTCCAGCCCTTGTCGGCCTGCAAGCGGAGATTATAT
TTTCATTCACGTGCACAGCGATTGGAACCTGTCTGCAAAACAGAAAAAAA
CGTAGCCACCACTCAGTAGAGATCCAGTGACAGACAGCTGCAGGACAGCG
GTACATCGACTTCCTTATTTTTTTCTCACAACTCCCCAACAACAGAAGCC
CCCCCCTCCCTCTTTTTGTTTTTTGTGCGATACTTCCAGCCCTTGTCGGC
CTGGAAGCGGGGTATTTTTTTCGTGAACAAGCGAGAGACTTCTTTTCACT
TGTCTGACGATCACGACTCTGTTGTATACCCCCGCATATCTGTCGTTTCA
GGTAGCCGTCAAGAACGTTGGGAAGAGCGGAGAACATGCAGAACACAAGT
GGTCCTTCTGCGGCAACAAGTTCTACGTCATGCTGATGATTGATTGGTAC
CAAGTGAGGGGCGGACACAAGGCGAACGACCACTGCCAGCAGTACTTCAA
AGTGAAGCTCGACGAAGACACAGGGTCAGCGTTCAGCTCGCTGTCAACGG
AGTTCGAGCAGGCGTCGAGCGATTCTGATGACGACACGATGTCCTGCGGG
AAACGCAAGCTGCGAGCGAGGGGCGGGGGAAAGCGAACTCTAAAGCGGAG
GAGGCCTTGAACGGACTCGTGGAGGCCCTGAAGTCGTCTGGGGCCGAGGT
AGCTGCGGCGATCGCGAAATTGGCCGACAACGACAAGTTGGCCCCGGCGA
AGGAGATGGTATCTGCCAGCAACCTCGTGGATGATTTGGAAGACGCTTTG
GATGAAGAAATAGAAGGCAAGAACCGTCCCAGGAAGATAGCAAGGATTTG
GGCAAACCTAGAACAGGCAACGGCGGATTACGCCGTTTTGAAGAAAGCCG
CGGGGGGTGGAGCGGGCACTACGGACAAAGCGAATCCGGCTGGCGCCGGA
GAATCGGGCGAAGAAGATTCGGACGAAGATGCTGCGGAGTTGCTATCTTT
GATAGACGCGGCGGGAGAGGAGGAGTGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:193911..196939-

>mRNA_P-littoralis_Contig146.60.1 ID=mRNA_P-littoralis_Contig146.60.1|Name=mRNA_P-littoralis_Contig146.60.1|organism=Pylaiella littoralis U1_48|type=CDS|length=462bp|location=Sequence derived from alignment at P-littoralis_Contig146:193911..196939- (Pylaiella littoralis U1_48)
ATGTCGCCTGGCCGCGTGGACTTTATCTTTCCCGGTCGTTTCAGGTGGGA
GGAGTGGGAGTTCAAGGATGGCGATAAGAAGGGTCAGGTGGACAAGGGCA
AAGCCCGCGAGAAGATACTTGGATGGTGGAAGGACATGCGGTCGGAGTAC
AGGGTAGCCGTCAAGAACGTTGGGAAGAGCGGAGAACATGCAGAACACAA
GTGGTCCTTCTGCGGCAACAAGTTCTACGTCATGCTGATGATTGATTGGT
ACCAAGTGAGGGGCGGACACAAGGCGAACGACCACTGCCAGCAGTACTTC
AAAGTGAAGCTCGACGAAGACACAGGGTCAGCGTTCAGCTCGCTGTCAAC
GGAGTTCGAGCAGGCGTCGAGCGATTCTGATGACGACACGATGTCCTGCG
GGAAACGCAAGCTGCGAGCGAGGGGCGGGGGAAAGCGAACTCTAAAGCGG
AGGAGGCCTTGA
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