mRNA_P-littoralis_Contig146.23.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.23.1
Unique NamemRNA_P-littoralis_Contig146.23.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig146.23.1 vs. uniprot
Match: A0A6H5L1B6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1B6_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.230e-37
Identity = 81/141 (57.45%), Postives = 89/141 (63.12%), Query Frame = 2 
Query:  536 MDGEPPGCQGLDARGGDICPPTWATKP*RQETILLAVRPST*PTPSNHGPVTDTELQEPAPVVHNISDSDTXXXXXXXXXXXXAADAEVAQTDRRRR-NSNGGPVGPLTRVRAKKIKRLSDHLPPAMSWKLAMRRLHDHND 955
            MDGEPPGCQGLDARGG ICPPTWAT P   ET   +   S  P+ +     T TE++EPAP  H                   AADAEVAQTDRRRR NSNGGPVGPL R  AK  +RLSDHL PA+S KLA  RLHDH +
Sbjct:    1 MDGEPPGCQGLDARGGGICPPTWATGPSGWETTQTSNFKSRLPSSTTSPIATQTEMEEPAPAFH-------------------AADAEVAQTDRRRRRNSNGGPVGPLIRAWAKHTRRLSDHLAPAVSCKLATCRLHDHME 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1B6_9PHAE1.230e-3757.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:119422..125098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1094
Hectar predicted targeting categoryother localisation
Exons7
Cds size207
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.23.1prot_P-littoralis_Contig146.23.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 119552..119758 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789686.3514872-UTR-P-littoralis_Contig146:119421..1195511680789686.3514872-UTR-P-littoralis_Contig146:119421..119551Pylaiella littoralis U1_48UTRP-littoralis_Contig146 119422..119551 -
1680789686.3782763-UTR-P-littoralis_Contig146:119758..1198951680789686.3782763-UTR-P-littoralis_Contig146:119758..119895Pylaiella littoralis U1_48UTRP-littoralis_Contig146 119759..119895 -
1680789686.3899343-UTR-P-littoralis_Contig146:120597..1207711680789686.3899343-UTR-P-littoralis_Contig146:120597..120771Pylaiella littoralis U1_48UTRP-littoralis_Contig146 120598..120771 -
1680789686.401212-UTR-P-littoralis_Contig146:121451..1214971680789686.401212-UTR-P-littoralis_Contig146:121451..121497Pylaiella littoralis U1_48UTRP-littoralis_Contig146 121452..121497 -
1680789686.4107506-UTR-P-littoralis_Contig146:121951..1220421680789686.4107506-UTR-P-littoralis_Contig146:121951..122042Pylaiella littoralis U1_48UTRP-littoralis_Contig146 121952..122042 -
1680789686.421616-UTR-P-littoralis_Contig146:122336..1224251680789686.421616-UTR-P-littoralis_Contig146:122336..122425Pylaiella littoralis U1_48UTRP-littoralis_Contig146 122337..122425 -
1680789686.4330635-UTR-P-littoralis_Contig146:123147..1233121680789686.4330635-UTR-P-littoralis_Contig146:123147..123312Pylaiella littoralis U1_48UTRP-littoralis_Contig146 123148..123312 -
1680789686.4413674-UTR-P-littoralis_Contig146:125043..1250981680789686.4413674-UTR-P-littoralis_Contig146:125043..125098Pylaiella littoralis U1_48UTRP-littoralis_Contig146 125044..125098 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789686.3649821-CDS-P-littoralis_Contig146:119551..1197581680789686.3649821-CDS-P-littoralis_Contig146:119551..119758Pylaiella littoralis U1_48CDSP-littoralis_Contig146 119552..119758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.23.1

>prot_P-littoralis_Contig146.23.1 ID=prot_P-littoralis_Contig146.23.1|Name=mRNA_P-littoralis_Contig146.23.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
MEEPAPAFHAADAEVAQTDRRRRNSNGGPVGPLTRVRAKKIKRLSDHLPP
AMSWKLAMRRLHDHNDPA*
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mRNA from alignment at P-littoralis_Contig146:119422..125098-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.23.1 ID=mRNA_P-littoralis_Contig146.23.1|Name=mRNA_P-littoralis_Contig146.23.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5677bp|location=Sequence derived from alignment at P-littoralis_Contig146:119422..125098- (Pylaiella littoralis U1_48)
GCAAAAGTGAAGGAAAGCATCAGCGCACCACTGCCAACCCTCAGAGCGAC
CAAAGGTGTGTCTACCCGCTCTCTCTTTCCCACGCTCTCTCTCTCTCCCA
CGTCCTCCCCCGCCGCCGGTGCACCTGTAAAAAGTTGTGGTCGTCGTGTA
GACCACGAGATACCCCTCCACCTCCCAGAAACGGTTGGAATATGGTCCTA
GAACATATCCAAAGGCTTTCTGCATCAAAGCTTTTTATTTTTGCGGCCGG
TGTGCGGACCTCCGTTTTGGTGCTATGCACGCAAACCGTTGTAGAATACG
CAAGAAACACCCCCCCCCTCCCCCCTGCTTTTTGAGCGATTCTGTGGAGG
CAGAGTGGTAGCATCACCCCCCACCCTGCCCAAAACTCATTTTTGAGCAC
GGGCCAGCCCCTCCTGTACTAAATTAATGACGTGTGGGCTGAAGGTGGTT
TCTACAGCACCATCGGGCAAATAAATTGCTTGATCGCCCACGGGGCTGCG
GAGCTGGCACGTTTTTTCTGATATCGCGGCGCCAAATCGCCGGACGAAGC
TCTTCTTTTGCACAGACCTTTGTCTTGGGTGGGTAAAAGGTCACCCAGCG
GCAGATTAGTTTACGAAGAATTGGATTTTCAAAGCTTGATTTAGTGTTTT
GGTCAGAAAGTGTACCTGGTAAACGTTTTGCTGCACCAACGTTCACCATT
TTGTCCGATGGCCCTGACCTTTTGCACGGATGACCGCCTAACCCATGCCG
AATCACAAAAAAAAAACAAGCCGAGCGGAGTCGATGCCGGGATTTGGCCC
CCGATTAAATATCCACGGAAGTACATGTGCACCCCACACCTCTGTGCGCT
GCCCAAAGTTGTTCACCGGCCCTAAAAAAATTCCAAAACGTGCGCCCGAC
CATCTCCAGCCATCTGCGCAAAACAAACGAGCAAAATCGAAGCACTTTGC
GCTGATCTGCCCTTTTTTGAGTGTGCCGTGTGACGGTGGATGGCACCACC
CTCCCCGTACATCCCCCACACTGCTGTACGCTGCCCAAAACTCTTCACTG
GCCCTATATATTTACCAAAACCTGCGCCCGACCCATCTCCGGCCATCTGC
GCAAAAGAAAAACGAGCAAAATCGAAGCACTTGGCGCTGATCTGCCCTTT
TTTGAGTGTGCCGTGTGACGGTGGATGGCACCACCTTCCCCGTACATCCC
CCTTTGACCGCCAAGCGTGCCCTCCTGTTATGAATGGCGCAACGACATCA
AATGTGTGCATTGTATGCATCCCTTCCCTTCTGCTGTCCATTGCATGCTG
GACGATTGAAAAAAACATGGGTGCCCACGGGGAACGCGCCCCGCCCGCCG
ATGGGACGCCCAAATAGTGTACTGTAGTGTAGCATAGAGGACCCCAGGGC
AAAGTTGTACGATTGCCAGCCAATCAGCAATCGTACACGTATCGTACATA
GTCGTGCTACAGTATTTTCAAGTGTTTTGTACGATTGGAGCATGGTTCAA
GTTTTCCAGCAAACCTTTAGAGCTCCTTATACAGTAGGTTCTTGCTGTGG
ATTGGAGGAGACCCGTAAGAGCCCTTATTGTCAGTGGACTTTGTGCGTCG
TTGAAGAGCACAGAAATACAAGATCCAGCGCCACGGTTCTCAATCGTGCA
CATGCCTGGGTTTGACAATCTGTTTTTGACGCTGCTGTCAGCTTCCGATG
AGAGTGAGACAGGTATACCTTTGGTAAGTTTGTATGTGAGGCTGATTTTC
GAATCTTTTCTGGCCCTTTTCCCGCCCCCTCCGCAGGTTTTGGAGAAGAA
CGCCACGCGCGACACCTGCTCTCTCCACCTATCCCCTTTTGAATTTTGCG
GCCGGGTTTGTGCGATTGGATCCTCCGGGGATTCATCTGGTGCTGACCGG
CGGTCGTCCCATTTTCCGCCCGGAGCATCTCGTGTGGTAAAAGCGTAGCA
GGTGAAATTCGGGTTGCGTGGTTTCATTGTTGATCGTGCTCGCTTGTGGC
ACGATACCATTGGACTACCTTGGCCTCGGAAAGCTCTCATTCAATCGCTT
TTCTCAGCCGCTTTGCTGTGTCAGGAGCCTAATTAGCTTGGGAAATAGCT
GTTTCTGCCCCCATTGTTTTTTCCACAGTACGTTCCAGTTTGTGTTGTCG
ACGTTTTCACGCGTTTTTTCAAGAACCAGCAATACTGATGCTGGATGGGA
AAACCTGTGCGCGCAACCAGTGTGAAAATGCCTTTGAACGTCTTGGTTTG
GTCGCAAATACTTTGTTCCTACTCCACCGTGGCTTCTGTGGATTGCAAAT
ATGTGTAAAGAAGTTGAGGTGAAAGCAGTCATATTCCGCAAAGTGTTTTC
TGTGAGTCTCTCCGTTTGCCATTATGACACGACCATTCCATGTGGTTGTT
CTACCCGCCGAGCCTTTTCTTGTGCCGACAAAATCTATCCAAGAATGAGG
ACAGACGAGAGCGAACAACCACGTGCAGGAAATCATTTGTGGAGTAGTGT
GCTCTTCGCGTCCGTTTTGCGTACTCCTCCCCCGCTGTGGATCTTGCCTT
TGCAGTCTGTTTTTGGGCTTCTATTTTCTGCGCCATCGCTTTTACTGTCA
CGCTTGTTAACGTATGCTCCTGTCCTCGTTGAAGAACCTCTGCCCCTCTT
TTTCTCTCGTTGTCTTTTCTTAGGTGTCCCAGCAGGCACGCACCACGGAG
AGCGCCCGTGCCCTCTCGCTCATTTGTTGCTGCTGGTCGGACAGATGGAT
CTGGCGAAAACGGTGAGAGCCCTTCTTTTATTTCGTGCCTCGTGTGTCGT
TGAAGTGCAGGGGACTCATAGGACCAACGATGCCCACGGTACCATGGTTC
TTCGTCACGCCTGTCGCGGGGTATTACGAACTGTTCGTGCGCTGTTTTCG
GCGCTGCTGTTTGTATTCGTCAAGCTTTGCGAGGGACAGGCAGATATGAA
TCTTGTTGGCTGTACGTGAGGCTAACTCCTCTTGCCTCCTTACGCTCTCT
CGCTTACACGCCACGCGTGAATACCTACACCCATCACCTGTCCCTCTTCT
GCGCAGGTGGTTCACGCGCTTGGATGATTTCTGGATTCGCCTGCTGCCGA
TCGGCGGAGGGGAAACGAGGAGCCAGTGTCAGTGGGAAGCATGGCGGGTG
AGAGTCGGCAGGCGCAAGCGGCGGCACGGGCACGCGCCTATCAAACCACA
GGCAGTTGTTGGCCTCGGAAAGCTTGCTGCCCCTTTGTTGAGTTGGGGCA
CCTGAATTCCTCCTCAAACAATGTTTCGTCCACCTCTGCGTTGACCCGTA
AGAAAACACCACGCCTCCGTCTGGTTGTAGCTAACTCACTGTGAGTAGGC
AGGTGTCTGAACCAGCTTATAGTTTTCTTCCGTGGCTCATTATACGTGTG
GTTTTGCAAAGTCATTGTCGGTGAGCTCTTCCTTACTACCAAAACCATAT
ACGTTCCGGGCGATTGGCCGTTTTCTGACACAGCTATGGATGTCCGAGTA
TTGAATTGTCGTAGCTCCTATTTTCACAATGCTTTCCCGATCTGCCACTT
ATTTCCTTCGCCGGTGCCCTCTCACTCTTCCTCACCGACACGGGGCAACA
GAAGACAAACAGAGGCACGCGGATTTCCTGCTGAGTGGTGACAACTGGTG
AGCAAGTGCTTTGCGGCGTGTCTAGTGTGCTTTTCCCAAGAGGGCAGAGA
GAGAGAGGTAACATGCAGGAGATATGTGTATATCAATCAACGAGAGGGAG
TAGAGTAGGAGAAGAGAAAGCGTACTATATTCCTCGATCCTATCGCCGTC
GTACACGGGCGTGCGTGCACCGTCCTACTATTCAAAGTTTGAACCAAAAC
CCGCTCACTTTTTGCCACCTCGAGAATCTCTGGTAGGCATGGTTCACCGA
GATATGCTCAAAATCATTTGAAGAGTGTAGAGAATCTCGTTCTGCCCTAA
CACCAGTCGCGCGGGCGTCCCTTTTCCCTTGTATCTCACCTCGTCCCACC
CCTTTCAAACCTACCCGAAACAAAGCTTCCTTTCGTCCCACAAACGCCCG
TCAAGTTTCGCACAAGATTCAATTATGTGGCCAGCTGTAGCGTTTCCGCG
CCCTTTCGCCTCATACTCTCCCCACGCCCTTTCACTTGTGCTCTCCCATC
ACAGGCCAGCGATATTATGCACCCTGCGCGCTCTTCACCCGTGCCCTTTG
TCGGCACTGCTGTGTAGCCCAACCGCGCACATCGTCCTTTATTTTCTTTG
CCTGTTAATTCCCCTATTTTGTGCGCCTCGCAATTTTCACGCTCTGTCTC
TCCACCCTCCCTCTACCCGCACTGCAGACCCGTGCCCCTCTTCGGCGCGG
CTCTTGGATCTACGTGGACGCGAAGGCGTGTGTGTGAGATGGGCGGGCCT
TGCAGCTTGGGAATATATGGACGGAGAGCCACCGGGATGCCAAGGATTGG
ATGCGAGAGGTGGTGATATTTGCCCGCCTACGTGGGCCACAAAACCTTAA
CGTGAGAGAAAAAATTGGAAAAACAGCAACACAGAAGGGCCTTTAGGTTC
ATCGTGAATGGGGACAGAGGTCTGTCGTCCCCGACACACAGTACAGCGGA
GCTTTGACGAGCACGTGTATACTTGTTTTGTTTTTCTTGAGTGTGAGAAG
ACCTTTGCACCTTTTCTGCTGCTATCCATCCTGCTGCATGTGCTCCTACA
GGTGTGCTATACCACATGAGTTGTTTTGGAATCACTCGGTTAGGTGTTTT
GTCCCGGGATTGGAACTTTCATCCCTCTCTCATCTTCAGCTATGGTGTGT
GTGGAACCCGTGTGTTGAAAACATGGAATATATCAGCAGATTGGTCTGGC
TTGTTTCATCGGCTCCATAGCTTTCCCTTCACATTGAAGCACGTGTTTTG
GGAGATTATGTTCACGTGTTTACACGATGCATACACTGTCATTGCCAAAA
TTAAATACGTGCGATCCTCCTTTCCGCCCAAATTGCGGTTTTGGCGGCAA
AGCGGAAAACATTCCATTGTATGTGCGTGTGTTCTCCGCGCTCTTTTTTT
TCTTGGAATTATCAAAGTGTGGGTTTAGGTAGCAACACTGGTTCCGCCTG
TATGCAACAGCAGACACCCAACATCTAAGACCCACACACTACGTGTCGAA
GGATCTTATCACACGACTTTCTGTACAAATCAAACTCATCGTCATAAATT
CAGGACAGGAAACAATATTGCTGGCGGTGAGGCCATCGACCTAACCAACT
CCGAGCAATCACGGCCCGGTCACAGACACCGAACTTCAAGAGCCGGCTCC
CGTCGTCCACAACATCTCCGATAGCGACACAGACACAGAAATGGAGGAAC
CTGCGCCCGCCTTCCACGCAGCCGATGCGGAAGTAGCACAGACTGACCGC
CGCCGCCGCAACAGCAACGGCGGTCCCGTCGGCCCCCTCACTCGTGTACG
GGCCAAGAAAATCAAGCGGCTGAGCGACCACCTCCCCCCGGCCATGTCGT
GGAAGCTGGCGATGCGTCGCCTCCACGACCACAACGACCCTGCCTGATTT
GTCCTTGTTTTTATGTTGTGCAGAGTTGTTGGTTGATACGGGGAAAGCTA
TCTGGCGCGATCAGTTATGCGCGATGCGCAAGTTTCCCGTTGATACCAGA
GCGTGGAAATAAGTGGCGAGAATTCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:119422..125098-

>mRNA_P-littoralis_Contig146.23.1 ID=mRNA_P-littoralis_Contig146.23.1|Name=mRNA_P-littoralis_Contig146.23.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig146:119422..125098- (Pylaiella littoralis U1_48)
ATGGAGGAACCTGCGCCCGCCTTCCACGCAGCCGATGCGGAAGTAGCACA
GACTGACCGCCGCCGCCGCAACAGCAACGGCGGTCCCGTCGGCCCCCTCA
CTCGTGTACGGGCCAAGAAAATCAAGCGGCTGAGCGACCACCTCCCCCCG
GCCATGTCGTGGAAGCTGGCGATGCGTCGCCTCCACGACCACAACGACCC
TGCCTGA
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