mRNA_P-littoralis_Contig146.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.20.1
Unique NamemRNA_P-littoralis_Contig146.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig146.20.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 1.350e-84
Identity = 124/182 (68.13%), Postives = 151/182 (82.97%), Query Frame = 3
Query:  276 VRANKATAVNADTITVFVHPLGKESLQHITSKFIADLLKTLPGVDVFHKFGLKLYSSEQNVSFRARKGDKKVRLCCSRKGWITVPKEEAYDDILKTLVDKTQEAVRMFSGVISPSYIDHFEKHAESILDFKDSPVPDQRKLYERRRNKVLNNIAVTVTDNLSRLSNWSDKKRKLVYSAPPTK 821
            VR NK   + +DT  VFV+PLGKESL+HI+  ++ADLL+ LPG+DVF+KFGLKLYS  QN++FRARKGDK  R+CCSRKGWITVP++EAYD+IL+ LV+KT+EAV MF   I   Y DHF+ H++SIL +KDS VP+QRKLYERRRNKVLNNIAV+VTDNL R+  WSDKKRKLVY A PT+
Sbjct:   92 VRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 273          
BLAST of mRNA_P-littoralis_Contig146.20.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K)

HSP 1 Score: 266 bits (680), Expect = 2.500e-84
Identity = 128/182 (70.33%), Postives = 151/182 (82.97%), Query Frame = 3
Query:  276 VRANKATAVNADTITVFVHPLGKESLQHITSKFIADLLKTLPGVDVFHKFGLKLYSSEQNVSFRARKGDKKVRLCCSRKGWITVPKEEAYDDILKTLVDKTQEAVRMFSGVISPSYIDHFEKHAESILDFKDSPVPDQRKLYERRRNKVLNNIAVTVTDNLSRLSNWSDKKRKLVYSAPPTK 821
            VR NK   V ADT  VFV+PLGKESLQHITS ++ADLL+ LPG+DVF+KFGLKLYS  QN++FRARKGDK  R+CCSRKGWITVP++EAYD+IL+ LV+KT+EAV MF   I   Y DHF+ +++SIL  KDS VP+QRKLYERRRNKVLNNIAV+VTDNL R+  WSDKKRKLVY A PT+
Sbjct:  190 VRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 371          
BLAST of mRNA_P-littoralis_Contig146.20.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 1.300e-69
Identity = 116/180 (64.44%), Postives = 134/180 (74.44%), Query Frame = 3
Query:  276 VRANKATAVNADTITVFVHPLGKESLQHITSKFIADLLKTLPGVDVFHKFGLKLYSSEQNVSFRARKGDKKVRLCCSRKGWITVPKEEAYDDILKTLVDKTQEAVRMFSGVISPSYIDHFEKHAESILDFKDSPVPDQRKLYERRRNKVLNNIAVTVTDNLSRLSNWSDKKRKLVYSAPP 815
            V  NK   V A+T  VFVHPLGKESLQH TS FIADLL+ LPG+DVF+KFGLKLYS  QN++FR RKGDK  R+CCSRKGWITVP+EEAYD+IL+ LV KT+EAV +                   IL +KDS  P+QRKLYERRR  +LNNIAV+VTDN+ R+S WSDKKRKLVY APP
Sbjct:   92 VCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVSI-------------------ILAYKDSAFPEQRKLYERRR--ILNNIAVSVTDNMRRMSGWSDKKRKLVYKAPP 250          
BLAST of mRNA_P-littoralis_Contig146.20.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.740e-42
Identity = 86/166 (51.81%), Postives = 113/166 (68.07%), Query Frame = 3
Query:  291 ATAVNADTITVFVHPLGKESLQHITSKFIADLLKTLPGVDVFHKFGLKLYSSEQNVSFRARKGDKKVRLCCSRKGWITVPKEEAYDDILKTLVDKTQEAVRMFSGVISPSYIDHFEKHAESILDFKDSPVPDQRKLYERRRNKVLNNIAVTVTDNLSRLSNWSDKK 788
            +T   ADT T+ V+PLG+ESLQHIT +++ DLLK    V VF KFGLKLYS  QNV+FR RK    VR+    K WITV K+EAYD+IL  LV+KT EAV M+   +S   ++HF      +L+ +DS VP+++KLYE+RRNK L+ IAV+V   LS+L  W  K+
Sbjct:   99 STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDK-WITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKR 263          
BLAST of mRNA_P-littoralis_Contig146.20.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.260e-41
Identity = 86/166 (51.81%), Postives = 113/166 (68.07%), Query Frame = 3
Query:  291 ATAVNADTITVFVHPLGKESLQHITSKFIADLLKTLPGVDVFHKFGLKLYSSEQNVSFRARKGDKKVRLCCSRKGWITVPKEEAYDDILKTLVDKTQEAVRMFSGVISPSYIDHFEKHAESILDFKDSPVPDQRKLYERRRNKVLNNIAVTVTDNLSRLSNWSDKK 788
            +T   ADT T+ V+PLG+ESLQHIT +++ DLLK    V VF KFGLKLYS  QNV+FR RK    VR+    K WITV K+EAYD+IL  LV+KT EAV M+   +S   ++HF      +L+ +DSPVP+++KLYE+ RNK L+ IAV+V   LS+L  W  K+
Sbjct: 2227 STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDK-WITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKR 2391          
BLAST of mRNA_P-littoralis_Contig146.20.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 8.790e-36
Identity = 79/135 (58.52%), Postives = 87/135 (64.44%), Query Frame = 3
Query:  369 KFIADLLKTLPGVDVFHKFGLKLYSSEQNVSFRARKGDKKVRLCCSRKGWITVPKEEAYDDILKTLVDKTQEAVRMFSGVISPSYIDHFEKHAESILDFKDSPVPDQRKLYERRRNKVLNNIAVTVTDNLSRLSN 773
            +FIADLL TL GVDVF+KFG+KLY  EQNV+FRARKGDK+V                                    SGV+   +IDHFEK AESILD KDS VP+QRKLYER RNKVLNNIAV VTDNLSRLSN
Sbjct:   98 EFIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRV------------------------------------SGVLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRLSN 196          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LP42_ECTSI1.350e-8468.13EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QN59_ESV1K2.500e-8470.33EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5K0V6_9PHAE1.300e-6964.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC66_9PHAE2.740e-4251.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JH58_9PHAE2.260e-4151.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K135_9PHAE8.790e-3658.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:88290..89110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size821
Hectar predicted targeting categoryother localisation
Exons1
Cds size390
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789686.3023727-UTR-P-littoralis_Contig146:88289..887201680789686.3023727-UTR-P-littoralis_Contig146:88289..88720Pylaiella littoralis U1_48UTRP-littoralis_Contig146 88290..88720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789686.3138204-CDS-P-littoralis_Contig146:88720..891101680789686.3138204-CDS-P-littoralis_Contig146:88720..89110Pylaiella littoralis U1_48CDSP-littoralis_Contig146 88721..89110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.20.1prot_P-littoralis_Contig146.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 88721..89110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.20.1

>prot_P-littoralis_Contig146.20.1 ID=prot_P-littoralis_Contig146.20.1|Name=mRNA_P-littoralis_Contig146.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
MALRHRKLRVKANPSCLDLSTLLEPVLSRFPNLIYVGIWYHDGKVLLYIQ
NDHNMSALTLGEQVEKAHVDIVDISSYSTTEGELQEEWRSSLFVQTRPLP
STPTLSLYSCTLWARSLFNTSPASSSRIC*
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mRNA from alignment at P-littoralis_Contig146:88290..89110-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.20.1 ID=mRNA_P-littoralis_Contig146.20.1|Name=mRNA_P-littoralis_Contig146.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=821bp|location=Sequence derived from alignment at P-littoralis_Contig146:88290..89110- (Pylaiella littoralis U1_48)
ATGGCGCTGCGTCACAGGAAGCTCAGGGTGAAGGCGAACCCATCGTGCCT TGACTTGAGCACCTTGCTGGAACCTGTCCTTTCGAGGTTTCCGAATCTCA TATACGTTGGGATCTGGTATCACGACGGTAAAGTGCTTCTCTACATACAA AACGATCACAACATGTCAGCTCTCACGCTCGGCGAACAAGTAGAGAAGGC ACATGTAGACATTGTTGATATCTCGTCGTATTCTACCACGGAAGGCGAGC TGCAAGAGGAGTGGCGATCTAGTCTGTTCGTGCAAACAAGGCCACTGCCG TCAACGCCGACACTATCACTGTATTCGTGCACCCTCTGGGCAAGGAGTCT CTTCAACACATCACCAGCAAGTTCATCGCGGATTTGCTGAAAACTCTTCC TGGAGTCGATGTCTTTCACAAATTTGGGTTAAAGCTGTACTCCTCAGAAC AGAACGTCAGCTTCCGGGCACGCAAAGGGGACAAGAAAGTCAGGTTGTGT TGTAGCCGCAAAGGATGGATCACCGTCCCAAAGGAAGAGGCATATGACGA CATCTTGAAAACCCTAGTTGACAAGACCCAGGAAGCTGTACGCATGTTTA GCGGGGTAATCTCGCCTTCCTACATCGATCATTTCGAGAAGCACGCAGAA AGTATCCTTGACTTCAAGGACTCCCCTGTTCCCGATCAGAGGAAGTTGTA TGAGAGAAGGAGGAACAAGGTGCTGAACAACATCGCTGTTACCGTGACCG ACAACTTGAGTCGGCTGAGTAACTGGAGCGACAAGAAGCGCAAGCTCGTC TACAGCGCGCCGCCCACGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:88290..89110-

>mRNA_P-littoralis_Contig146.20.1 ID=mRNA_P-littoralis_Contig146.20.1|Name=mRNA_P-littoralis_Contig146.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig146:88290..89110- (Pylaiella littoralis U1_48)
ATGGCGCTGCGTCACAGGAAGCTCAGGGTGAAGGCGAACCCATCGTGCCT
TGACTTGAGCACCTTGCTGGAACCTGTCCTTTCGAGGTTTCCGAATCTCA
TATACGTTGGGATCTGGTATCACGACGGTAAAGTGCTTCTCTACATACAA
AACGATCACAACATGTCAGCTCTCACGCTCGGCGAACAAGTAGAGAAGGC
ACATGTAGACATTGTTGATATCTCGTCGTATTCTACCACGGAAGGCGAGC
TGCAAGAGGAGTGGCGATCTAGTCTGTTCGTGCAAACAAGGCCACTGCCG
TCAACGCCGACACTATCACTGTATTCGTGCACCCTCTGGGCAAGGAGTCT
CTTCAACACATCACCAGCAAGTTCATCGCGGATTTGCTGA
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