mRNA_P-littoralis_Contig146.124.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig146.124.2 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI) HSP 1 Score: 374 bits (961), Expect = 1.620e-122 Identity = 189/217 (87.10%), Postives = 203/217 (93.55%), Query Frame = 1
Query: 34 TQMFLGTAATLIASSSAFVAPMAVRSVAPAAPSSSLKMSAGSDYVATLPGAPFGDGKIFDPLGLSDGAEPEDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARYPEFWVFSLLGMAFIEYNTITKAYETPSAVTGEGGLKEDYSPGNLGFDPLGIKPKTEEDLAVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 684
TQ+FLG+AATLIASS+AFVAPMAVRS APA+ SS+LKMSAGSDYVATLPGAPFGDGKIFDPL LSDGA+P DIK WREAEIKHGRVAMLASLGVLVAE+YHP FMGPDYIGPAVDHFQEISA+YPEFWVFSLLGMAFIEYNTI A+ETPSAVTGEGGLKEDY PG+LGFDPL +KP+ E L VM+TKELNNGRLAMIGIAGMLVQEL+NPADILG
Sbjct: 4 TQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
BLAST of mRNA_P-littoralis_Contig146.124.2 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI) HSP 1 Score: 366 bits (939), Expect = 3.300e-119 Identity = 183/215 (85.12%), Postives = 200/215 (93.02%), Query Frame = 1
Query: 40 MFLGTAATLIASSSAFVAPMAVRSVAPAAPSSSLKMSAGSDYVATLPGAPFGDGKIFDPLGLSDGAEPEDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARYPEFWVFSLLGMAFIEYNTITKAYETPSAVTGEGGLKEDYSPGNLGFDPLGIKPKTEEDLAVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 684
MFLGTAATLIASS+AFVAPMAVRS APA+ +S+LKMSAGSDYVATLPGAPFGDGKIFDPL LSDGAEP +IKLWREAEIKHGRVAMLA++GV+VAE+YHP FMGPDYIGPAVDHFQEISA++PEFW FSLLGMAFIEYNTITKAY PS VTGEGGL+++YSPG+LGFDPL +KPK + L MQTKELNNGRLAMIGIAGMLVQELVNPADILG
Sbjct: 7 MFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
BLAST of mRNA_P-littoralis_Contig146.124.2 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI) HSP 1 Score: 345 bits (885), Expect = 4.290e-111 Identity = 176/215 (81.86%), Postives = 191/215 (88.84%), Query Frame = 1
Query: 37 QMFLGTAATLIASSSAFVAPMAVRSVAPAAPSSSLKMSAGSDYVATLPGAPFGDGKIFDPLGLSDGAEPEDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARYPEFWVFSLLGMAFIEYNTITKAYETPSAVTGEGGLKEDYSPGNLGFDPLGIKPKTEEDLAVMQTKELNNGRLAMIGIAGMLVQELVNPADIL 681
QMFLGTAA LIASS+AFVAP+AVRS APA+ +S+LKMSAGSDYVATLPGAPF DGKIFDPL LSDGA P DIK WREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISA++PEFW FSLLGMAFIEYNTI A++TPSAVTGEGGLKEDY PG+LGFDPL +KP E L VM+TKELNNGRLAMIGIAGML QELVN DIL
Sbjct: 5 QMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
BLAST of mRNA_P-littoralis_Contig146.124.2 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI) HSP 1 Score: 329 bits (843), Expect = 6.330e-105 Identity = 167/221 (75.57%), Postives = 194/221 (87.78%), Query Frame = 1
Query: 22 VATTTQMFLGTAATLIASSSAFVAPMAVRSVAPAAPSSSLKMSAGSDYVATLPGAPFGDGKIFDPLGLSDGAEPEDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARYPEFWVFSLLGMAFIEYNTITKAYETPSAVTGEGGLKEDYSPGNLGFDPLGIKPKTEEDLAVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 684
+A ++ MFLGTAATLIASS+AFV PMAVRS APA+ +S+LKMSAG+DY+ATLPGA +GKIFD L L+DGA+P +IKLWREAEIKHGRVAMLA++GV+VAE+YHPFFMGPDYIGPAVDHFQEI+A++P+FW +SLLGMAFIEYNTI KAY PS VTGEGGL+++YSPG+LGFDP IKPK + L MQ KELNNGRLAMIGI GMLVQELVN DILG
Sbjct: 1 MAASSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
BLAST of mRNA_P-littoralis_Contig146.124.2 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE) HSP 1 Score: 289 bits (739), Expect = 6.940e-90 Identity = 158/216 (73.15%), Postives = 166/216 (76.85%), Query Frame = 1
Query: 37 QMFLGTAATLIASSSAFVAPMAVRSVAPAAPSSSLKMSAGSDYVATLPGAPFGDGKIFDPLGLSDGAEPEDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARYPEFWVFSLLGMAFIEYNTITKAYETPSAVTGEGGLKEDYSPGNLGFDPLGIKPKTEEDLAVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 684
QMF+GTAATLIASS+AFVAPMAVRSV S LKMSAGSDYVATLPGAPF DGKIFDPLGLSDGA P DIK WREAEIKHGRVAMLASLGV+VAE FW FSLLGMAFIEYNTI A++TPSAVTGEGGLKEDY PG+LGFDPL +KP E L VM+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct: 5 QMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
BLAST of mRNA_P-littoralis_Contig146.124.2 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI) HSP 1 Score: 285 bits (729), Expect = 2.390e-88 Identity = 136/161 (84.47%), Postives = 147/161 (91.30%), Query Frame = 1
Query: 202 KIFDPLGLSDGAEPEDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARYPEFWVFSLLGMAFIEYNTITKAYETPSAVTGEGGLKEDYSPGNLGFDPLGIKPKTEEDLAVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 684
+IFDPLGLSDGA P DIK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISA++PEFW FSLLGMAF+EYNTI A++TPSAVTGEGGLKEDY PG+LGFDPL +KP E L VM+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct: 36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
BLAST of mRNA_P-littoralis_Contig146.124.2 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE) HSP 1 Score: 290 bits (743), Expect = 1.280e-87 Identity = 185/388 (47.68%), Postives = 197/388 (50.77%), Query Frame = 1
Query: 37 QMFLGTAATLIASSSAFVAPMAVRSVAPAAPSSS-LKMSAGSDYVATLPGAPFGDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLGLSDGAEPEDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARYPEFWVFSLLGMAFIEYNTITKAYETPSAVTGEGGLKEDYSPGNLGFDPLGIKPKTEEDLAVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 684
QMF+GTAATLIASS+AFVAP+AVRSVA PSSS L MSAGSDYVATLPGAPF DGK IFDPLGLSDGA P DIK WREAEIKHGRVAMLASLGV+VAE+YHPFFMGPDYIGPAVDHFQEISA++PEFW FSLLGMAFIEYNTI A++TPSAVTGEGGLKEDY PG+LGFDPL +KP E L VM+TKELNNGRLAMIGIAGML QELVNPADILG
Sbjct: 5 QMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
BLAST of mRNA_P-littoralis_Contig146.124.2 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI) HSP 1 Score: 276 bits (706), Expect = 3.190e-85 Identity = 133/160 (83.12%), Postives = 143/160 (89.38%), Query Frame = 1
Query: 202 KIFDPLGLSDGAEPEDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARYPEFWVFSLLGMAFIEYNTITKAYETPSAVTGEGGLKEDYSPGNLGFDPLGIKPKTEEDLAVMQTKELNNGRLAMIGIAGMLVQELVNPADIL 681
KIFDPLGL+DGAE DIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISAR+PEFW FSLL +A IEYNTITKAY PS VTGEGGL+++YSPG+LGFDPL +KP + L MQTKELNNGRLAMIGIAG LVQELVNP +IL
Sbjct: 15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
BLAST of mRNA_P-littoralis_Contig146.124.2 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI) HSP 1 Score: 267 bits (683), Expect = 1.760e-80 Identity = 132/222 (59.46%), Postives = 171/222 (77.03%), Query Frame = 1
Query: 19 MVATTTQMFLGTAATLIASSSAFVAPMAVRSVAPAAPSSSLKMSAGSDYVATLPGAPFGDGKIFDPLGLSDGAEPEDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARYPEFWVFSLLGMAFIEYNTITKAYETPSAVTGEGGLKEDYSPGNLGFDPLGIKPKTEEDLAVMQTKELNNGRLAMIGIAGMLVQELVNPADILG 684
++ T+T +G A+ AS AF+ P +++ S++ +MSAGSDYV+TLPGAPF DGK++DP+GLS A+PEDIK WREAEIKHGRVAMLAS+GVLVAE +HP F+GPDYIGPA+ HF+EI+AR+P+FW +LL +A++EY I + VTGEGG++ DY PG+LGFDPLG+ P+ E +L VM+TKELN+GRLAMIGI GM+VQELV P I G
Sbjct: 51 VMVTSTGALVGMASWCFASCEAFIVPTPT-TLSARPTSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
BLAST of mRNA_P-littoralis_Contig146.124.2 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI) HSP 1 Score: 254 bits (650), Expect = 3.200e-76 Identity = 136/222 (61.26%), Postives = 171/222 (77.03%), Query Frame = 1
Query: 31 TTQMFLGTAATLIASSSAFVAPMAV--RSVAPAAPSSSLKMSAGSDYVATLPGAPFG---DGKIFDPLGLSDGAEPEDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARYPEFWVFSLLGMAFIEYNTITKAYETPSAVTGEGGLKEDYSPGNLGFDPLGIKPKTEEDLAVMQTKELNNGRLAMIGIAGMLVQELVNPADIL 681
T+Q+FLGTAATLIASS+AFVAP+A S+A A SS+ KM+AGSDY A+LPGAPFG +GK FDP GL+ +PE IK WREAE+KHGRV+MLA++G+LV+E +HP FMGP YIGPAV+H Q+I+ YP FWV SL +AFIE TI A+ T S VTG G LK +Y PG+LGFDPLG+ PK ED ++Q++EL+ GR AMIG+ GM+VQE+V+ IL
Sbjct: 3 TSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.124.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig146.124.2 >prot_P-littoralis_Contig146.124.2 ID=prot_P-littoralis_Contig146.124.2|Name=mRNA_P-littoralis_Contig146.124.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=223bp MVATTTQMFLGTAATLIASSSAFVAPMAVRSVAPAAPSSSLKMSAGSDYVback to top mRNA from alignment at P-littoralis_Contig146:480601..485582- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig146.124.2 ID=mRNA_P-littoralis_Contig146.124.2|Name=mRNA_P-littoralis_Contig146.124.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4982bp|location=Sequence derived from alignment at P-littoralis_Contig146:480601..485582- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig146:480601..485582- >mRNA_P-littoralis_Contig146.124.2 ID=mRNA_P-littoralis_Contig146.124.2|Name=mRNA_P-littoralis_Contig146.124.2|organism=Pylaiella littoralis U1_48|type=CDS|length=669bp|location=Sequence derived from alignment at P-littoralis_Contig146:480601..485582- (Pylaiella littoralis U1_48)back to top |