mRNA_P-littoralis_Contig146.108.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.108.1
Unique NamemRNA_P-littoralis_Contig146.108.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:426542..428492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size493
Hectar predicted targeting categoryother localisation
Exons3
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789685.6595025-CDS-P-littoralis_Contig146:426541..4267901680789685.6595025-CDS-P-littoralis_Contig146:426541..426790Pylaiella littoralis U1_48CDSP-littoralis_Contig146 426542..426790 +
1680789685.6732874-CDS-P-littoralis_Contig146:427474..4275681680789685.6732874-CDS-P-littoralis_Contig146:427474..427568Pylaiella littoralis U1_48CDSP-littoralis_Contig146 427475..427568 +
1680789685.6825795-CDS-P-littoralis_Contig146:428343..4284921680789685.6825795-CDS-P-littoralis_Contig146:428343..428492Pylaiella littoralis U1_48CDSP-littoralis_Contig146 428344..428492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.108.1prot_P-littoralis_Contig146.108.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 426542..428492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.108.1

>prot_P-littoralis_Contig146.108.1 ID=prot_P-littoralis_Contig146.108.1|Name=mRNA_P-littoralis_Contig146.108.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=164bp
SIPHSSTFAIDDTSAALFSRITTPHNRYPMENHHLCQASIVIQQPTSVTA
LESGAVFQEAGGYCSTTGGPSHVPTTASTGVEATRIMSKVIVIVNSIVLA
FYVFMHIGGDFAGPIVALHVLSSVIGIAIGRKARRSFSKSSFKLAALVFA
LEFAMYAVFLWIW*
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mRNA from alignment at P-littoralis_Contig146:426542..428492+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.108.1 ID=mRNA_P-littoralis_Contig146.108.1|Name=mRNA_P-littoralis_Contig146.108.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1951bp|location=Sequence derived from alignment at P-littoralis_Contig146:426542..428492+ (Pylaiella littoralis U1_48)
AGCATTCCTCACAGCAGCACATTCGCGATTGACGATACATCAGCAGCACT
CTTTTCTCGGATTACAACACCACATAATCGGTATCCTATGGAAAACCACC
ACCTATGCCAGGCTTCGATCGTGATCCAACAGCCAACGAGCGTGACTGCC
CTCGAGTCAGGGGCGGTCTTTCAAGAAGCCGGCGGCTACTGCTCCACAAC
CGGGGGTCCGTCCCATGTTCCGACCACTGCTTCGACTGGTGTTGAAGCGG
TGAGAATTCGTGCCTTCCCTCCAGATGAGCACTCGTTAGGCGAGATAGAG
AGGAAAGGCATGGATACTATAATACACCCCCCCAAGGTGTTGACATTACA
CAACAAGTTTGACTAAAAAATGAGGTCCTGATTTATGTTCATTTAGACAT
GATTGCAGGGAGGGGATCCCGGTTTGGGCAGATGAATACGCGAGGAGAAT
TCCGCAGTTTTTAGTTTAGACGGTGAGTGCGAGCCACACGATCGGGTGGG
GTATGCTTTGATGTGTAGCTGTATCGAAACACTCGATACTGCTGAGGGTA
AACAATTAAAGTTAACGTTTCCCCCTCTGTCTCAGTTTATGAATTACGCT
TGCGCTCGTAACGACTTTGGGTTGAGAGGCTTTCAGAGAAAATACACCGA
ACCTTCCCTTTCGTCTTGGAGGGGCGGGCAGAAGCTCCCCCACCACACAC
CCAAACGATATGCTGTCTTGATGAGCAACTTTTTCGCATGCGCCTCCTTC
GCGTTTTCGATAAAGCGAGTGAGAAAGCTATATAACCTACTCTCGTTCTT
CCGGAAAACGGAACGAAAAAAATACTTCAGGGACGCGTGTAAAATAATCC
CAGGTATGTACATTATAGGCAAGCAATAATCCCCTTCTCCCCGACCGCCC
ACGTCGTGCCCTGCTTATACCTCGCCCGCCTAGACGAGGATAATGTCCAA
AGTCATCGTCATCGTCAACAGCATCGTTCTGGCCTTCTATGTTTTCATGC
ACATCGGGGGCGACTTTGCTGGTCCAAGTACGTGTGCTGCTATCACTTAA
ACTGTGCTGTCATGAATAGAGGGATTCTGTGACGGAAGACTCACTCCCTT
TTCCTCACCATTCACGAGTGATGAGAGGCGTTCACCACAAACGTAGCCCC
CACAACCCCGAGAATCAGTATCGACCACAGTACCATCAAGAGTCGGGTCC
TCTAGTGAGTCAAAGGCACGTGTTAAACATATAAAAAGTACGAAGTATCA
TTCATCTTGCATCACCCCCTGACTCTGTTTTGTATCATACGCCCACTCCG
GAGGGGAATCTTGTACATACACGTATATTTCGAAGAATTTTTTGGATGCT
GCTTTTGACTTTGAGCTGTGGGTCGAGGATGGGCTGATACAATAGTGGCG
TGTTGCACTGATCGCACAATATGTGTTTGTTTGCTGTGGTACCCGACGTA
CTGGATAGTGCACATGTGTTTCACGTACCTTGAACTCATTATTTCTTTGC
TAGCCCAAACGCTCTCTTCTCCATTTCCTCTGGTGGCATATTTTTAGTAG
AGGTAGCAAAGCACCGGCTTCAACACCGAACGGTCGCCTCCCCGAGGCCC
GCCAACCTGTTTTATAGGGTCATCATCCACAGCCGCCAACCGTCCATCTG
CGATACAGCGGGAAAACCTGCCTTTTTTTTTTTTGTCACACCTGGGGCCC
ATGTGCATTTTGGTGAACATACACCCTTACGCTATAAATCTTAACTGAAA
CAACCTCTCGAAACGGTCCATCGCGTGTGCCCCCCCCCCCCTGCATGCTC
AGTCGTTGCATTACATGTGCTTTCCAGCGTGATTGGGATCGCCATCGGCA
GGAAAGCACGGCGATCGTTCTCCAAGTCGTCTTTCAAGCTTGCCGCACTT
GTGTTTGCCCTGGAGTTTGCCATGTACGCCGTTTTCCTGTGGATTTGGTG
A
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:426542..428492+

>mRNA_P-littoralis_Contig146.108.1 ID=mRNA_P-littoralis_Contig146.108.1|Name=mRNA_P-littoralis_Contig146.108.1|organism=Pylaiella littoralis U1_48|type=CDS|length=492bp|location=Sequence derived from alignment at P-littoralis_Contig146:426542..428492+ (Pylaiella littoralis U1_48)
AGCATTCCTCACAGCAGCACATTCGCGATTGACGATACATCAGCAGCACT
CTTTTCTCGGATTACAACACCACATAATCGGTATCCTATGGAAAACCACC
ACCTATGCCAGGCTTCGATCGTGATCCAACAGCCAACGAGCGTGACTGCC
CTCGAGTCAGGGGCGGTCTTTCAAGAAGCCGGCGGCTACTGCTCCACAAC
CGGGGGTCCGTCCCATGTTCCGACCACTGCTTCGACTGGTGTTGAAGCGA
CGAGGATAATGTCCAAAGTCATCGTCATCGTCAACAGCATCGTTCTGGCC
TTCTATGTTTTCATGCACATCGGGGGCGACTTTGCTGGTCCAATCGTTGC
ATTACATGTGCTTTCCAGCGTGATTGGGATCGCCATCGGCAGGAAAGCAC
GGCGATCGTTCTCCAAGTCGTCTTTCAAGCTTGCCGCACTTGTGTTTGCC
CTGGAGTTTGCCATGTACGCCGTTTTCCTGTGGATTTGGTGA
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