mRNA_P-littoralis_Contig146.106.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig146.106.1
Unique NamemRNA_P-littoralis_Contig146.106.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig146.106.1 vs. uniprot
Match: A0A6H5KHG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG3_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 4.460e-15
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   22 AGIRMQDVLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVFA 207
            AG+  + VLDRQ     D GYCLA RVRNQVY++ + DL C+G GNQC A  CM AAL VFA
Sbjct:  101 AGVLSRKVLDRQMTHDGDPGYCLAKRVRNQVYYDTSIDLDCHGKGNQCSAGTCMKAALQVFA 162
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BLAST of mRNA_P-littoralis_Contig146.106.1 vs. uniprot
Match: A0A6H5KG83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG83_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.870e-15
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    1 LHQAN--IIAGIRMQDVLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVFA 207
            LHQ+   ++A +R+QDV  R     +D GYC+A RVRNQ Y++ AKDLGC+G GNQ KA +CM AA  VFA
Sbjct:   95 LHQSASAVLAAVRLQDVFTRYK---DDPGYCVAKRVRNQGYYDTAKDLGCFGRGNQLKAGECMCAATKVFA 162
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BLAST of mRNA_P-littoralis_Contig146.106.1 vs. uniprot
Match: A0A6H5KKJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKJ8_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.250e-14
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   31 RMQDVLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVFA 207
            R QDV  R     +D GYC+A RVRNQVY++ AKDLGC+G GNQ KA +CM AA  VFA
Sbjct:   16 RQQDVCTRYK---DDPGYCVAKRVRNQVYYDTAKDLGCFGRGNQLKAGECMRAATKVFA 71
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BLAST of mRNA_P-littoralis_Contig146.106.1 vs. uniprot
Match: D7G5X1_ECTSI (Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X1_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 6.010e-13
Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:   34 MQDVLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVFA 207
            +Q VLDR+  R  D GYCLA RVR+QVY+ A+ DL C G GNQC A  CM AA  V+A
Sbjct:   63 VQKVLDREVSRDGDAGYCLAKRVRHQVYYGASADLLCKGMGNQCTAGACMRAAAQVYA 120
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BLAST of mRNA_P-littoralis_Contig146.106.1 vs. uniprot
Match: A0A6H5KBF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF5_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.490e-12
Identity = 33/54 (61.11%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   43 VLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVF 204
            VLDRQ  R  D GYCLA RVR QVY+EA+ DL C G  NQC A  CM AA  V+
Sbjct:    3 VLDRQVSRDGDAGYCLANRVRYQVYYEASADLLCKGMDNQCTAGACMRAAAQVY 56
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BLAST of mRNA_P-littoralis_Contig146.106.1 vs. uniprot
Match: A0A6H5JMB2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.760e-11
Identity = 32/51 (62.75%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   52 RQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYGAGNQCKAAKCMSAALGVF 204
            RQ +   D GYCLA RVRNQVY++   DL   GAGNQC AA+CM AAL VF
Sbjct:    9 RQLKLDGDPGYCLAKRVRNQVYYDTPTDLLAKGAGNQCTAAECMVAALKVF 59
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig146.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KHG3_9PHAE4.460e-1559.68Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG83_9PHAE5.870e-1554.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKJ8_9PHAE2.250e-1461.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5X1_ECTSI6.010e-1358.62Ubiquitinyl hydrolase 1 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBF5_9PHAE1.490e-1261.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMB2_9PHAE3.760e-1162.75Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig146contigP-littoralis_Contig146:373659..377937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size209
Hectar predicted targeting categoryother localisation
Exons2
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789689.0189703-CDS-P-littoralis_Contig146:373658..3736971680789689.0189703-CDS-P-littoralis_Contig146:373658..373697Pylaiella littoralis U1_48CDSP-littoralis_Contig146 373659..373697 +
1680789689.029872-CDS-P-littoralis_Contig146:377768..3779361680789689.029872-CDS-P-littoralis_Contig146:377768..377936Pylaiella littoralis U1_48CDSP-littoralis_Contig146 377769..377936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig146.106.1prot_P-littoralis_Contig146.106.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig146 373659..377936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig146.106.1

>prot_P-littoralis_Contig146.106.1 ID=prot_P-littoralis_Contig146.106.1|Name=mRNA_P-littoralis_Contig146.106.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
LHQANIIAGIRMQDVLDRQTQRGEDVGYCLATRVRNQVYHEAAKDLGCYG
AGNQCKAAKCMSAALGVFA
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mRNA from alignment at P-littoralis_Contig146:373659..377937+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig146.106.1 ID=mRNA_P-littoralis_Contig146.106.1|Name=mRNA_P-littoralis_Contig146.106.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4279bp|location=Sequence derived from alignment at P-littoralis_Contig146:373659..377937+ (Pylaiella littoralis U1_48)
CTTCACCAGGCTAACATCATAGCCGGGATACGCATGCAGGTTGGTCAAGC
AAAAAATAAAAGCATACCGCCGGAACAACAGCAGCAGCAGCAGACTTATT
CAGTTGAAAACATACCGTCCAATGTATAGTAGTGGCACATGAACATGAGC
ATCACATGTGGTATACACTGAGACATCATAGGCTTGTACTTCGAGTATGT
ATGTGTAGTTAGGAGTATGTATGTATTTTTAATTAGCAATATGTTTATGT
TTAAGTATGTACTTCGTATGTGCGGCTGTACTGCTGTATACTCCGTACGA
GTATTTATATTACACGTTATCTACAGCAGCTGTACTGCTGTATGTAAATA
TTATATCATACACGCAGTATACTTCGTGTACGATGTACTGCTGTATGTTA
AGTCCGGGCTTGAAAATGCGGTGGCGGCAGTGGGGGACTGTTTGCACTGT
CCTAAAGTAAAAAGAGCTTTTGTTATTGTTGTTGTTGTTGATTCTCACAT
TAGCTCACTACCGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCACATAT
CGTGCTAGGAGGAAAAAAAATAAAAAAATAAAATATATGGACTATGATCA
CCCACAGTCAGATCAGACGGGGTACCGTTGGGGTACCATCTGTGGTGGCC
AGGATACCAAACAAATACAGAAAAAATAATAACAGGCTCGAAAGAAAAAC
AAAAATTGGAAACAGTCCGACAAACAAAAAATAACCAAGACAAACCTCAA
CCATAACCATATACTTCGAAGTACTTCGTGCATCGAACCAGGGCCCAGGG
CCATGACAGACCAAAGCAGACGCAAACCAGGGCGATGGCCCAGTAACTAT
ATGATCAACAGACGAAAGACAAAAATAAAATAAAAAAGAAGAAGATACAG
GGAGGGCACAAAGACTGAGGGAGTGCATTCGTACACAAACATAACAAACA
GGCCGCCGCCAAACAAAGAGGAAGCAGGGGAACGAAAAGGGAAAAGAAGA
TCGGAAGTACCGGAAGTCGGGGGGGGGGCGGGAGGGGAAGGTGATAAAAA
TAAAACAAAAGGCATGCAATCAATCGCAAACGTGTCTTGCCACGAGGTCT
GCCTGTTCACGCTTGCTCTCCTCAGTCGCACTCATGCCTCCTGCTCCTGG
CACCACCGTACCCAGTTGTTTCTGCCCCACATCTTTGGCAGCAGCTACAC
CACCACTCCGCCCTACAGGTTTTCCACTCCGGCCACCCCGTAGCTTGGCA
TTGGACTGCTTCTTCTTGTGCTGTGCAACTCCAACCCCACTACCCCGCTG
CCCTTGTGCCCCCCGTACTCCTCCTCTCGTTTACCCCCGCCATCCGTTCT
CCCTCTTTTAGTCAAGGCCTGCCTCTCAGCCGCGTCCTCTCTCTTTTCCG
TCGACGTGTCTCTGATAGGTCTCCTCTTTCTTGAGCCACTCGTCCGTGAA
CCGCCGCGCACCCTCGTCGACCCTGTCGTACCACTCGTCAGCTCTCTTGG
CACTTGCCTCCCACCCCTCCTTTTTGTCGACCACGATGTCGAACGCTTCG
AGGTCCTCCCGCATTCGCCTCAGCCAGTCAAACTCTTGCCCCCCCAGATA
CCTTGCTCCCCCTGCAATTCTCCCAAGAGAGCAATTTTCGGGAGTCTCTC
GTCTCTCATGCGCGCAACGAATCCTGCGAAGCACAGTCGCCGCTTGCGCA
CGGTGGCCTCAACGCTCTCGTTGCAACCCGCGGTGATCAGGGCTTTGGCG
TAGGAGAGGGGTCGGTCTGTTTTCTCCCTCTTTTTCCATCCGATGCAGCG
AAGGAGGAAGAAGTGGTGGGCTGACCGAAGCTTGCGGTACTCCGCTGGCT
TCAGATTCCATGTGACACACCCGTAGAGTAGGGTCTCCACGACTTCAGCT
TGGAGGAGTCGTACTTTTAGTCGAAGAGGGCCCCGGGCGGTCGTACATTG
CCTGGCTGTTGCGCCGGAAGCAGGCGTGCGCTCGCTGCACTCGGTGGTTA
ATCTCGCCCTCAATGCTGCCGTCCTCACAAATCTTACCCCCGAGATACAC
AAAGTCTTTCTTCTGCTTGAAGACCATCCCGGCAGCGTCGATCGTGAACG
AGCACGCCTCCATCCCTTTCGCGAGCATACACATGGTCTCCGTCTTGGGT
TCTGACACCAACAGCCCAAACCGCCCGGCCACACGTACGATGATCGACAT
CATCTTCTCAAGGCTCCCAGGTGATTGAGATACAATACAGGCGTCGTCGG
CGTAGAGCATACTCCAGATGGACTTCACTGCCTCCACCAGTCGGGCGTTC
CTCCCCTTCCCCTTCGTCACCTTCCTCTTGACCTTGGCCATGTCCGCCAT
CACCTCCGCATCCTTGCTGATCTCGGCAAAGGCCACCATGAGCATCGCAG
CAAAGAAAAGGTTGAACAGCAGGGGTGCCAGATTACATCCCTGTCGGAGT
CCCTGCCCCACATTATATATACACATGGTCCAGGCAGAAGAATTTTTCCA
AAGGGGGTACCGGTTTTTTCTCCGTCATTTTAAGGAGTTGACAGGTGAAA
CAAACTTTTCCAGAATCGCGCGGCCGAGAGGAACCCAAAACCAGTCTTAA
AGAAAATTCCATGAACAATGGCCATTTTCGACTTTTTTGGGGATTTTTTT
TTTTTTCCCTTTTTTTTCCTTTCTTTTTTATCCTGAAACCGCAAAAAAAA
AATGCCCCTAATCGAAACTGAATTAACCCCAATCCACCACCCAATCCATG
ACCGACTTGTCGAGAAGACACTTCGTAATAGCGAAGCAAGGTACTTCTGT
AGTTCTACATATATATTTAAATACATATCATATACTAGCAGAGATTGGAA
CGATTTTTAATGTGAAGAAAACACACACACACACAGCAGTAGGTAATATA
CCTGGTATATATATAAAAGTAAAATACACAACATCAACTTTGCGTAGGAG
CCGACGCCACCGTCTCCAAACTCGTGTCCAAGCGCGAGTCGTTCAAGTGC
TTTAATGATTTGTTCAAGTGTTTCATAGAGTCTATCCTGGCTTCCCGCGA
GGCTGCAAGTGCCGTCTACTCGTTTTTCTTGCGCTCCTCGGGTGATGCGG
CCGTGCTCTTTGCCATCAACACGGCATCAACCCGGTCAGTAGATGAGCGG
TGGCTCGTCCACTTCTTTAGGTCTCTGTATTGCATGTAACCGTACTTCTT
CTTTGGTGGGCACCCGCCGGGCATGGTCCTCGTGTGTGGGTGTGTGGGTG
TGTACACCAGTACACCAACGTGTGTGTGCCACCTGGTGTGTACTTCGTGG
TTGTGCCCTGTTGGTACTCTAACTTCAAGTGTTAATTATTCAAAAAAAAA
AACTGATGGCGCCATTTTTCACAACGGCTTTTCTCGGCCCACAGAGTTTT
TTTCAAAAAAAAAAAAAATGGTCCTGGGTACAGGTCCAATTCATCCGAAT
CCGAGGAGTTTTTCGACATCCATCGTGCCAGTTTTGCGCTAAAATCTCCA
CAGCTGGAGCAGGGGAAAAGTGGGTTTTTCGCCCATATCTCGCTTAAAAA
TAGATAAAAAAAGAATCTGCTTCGACAGGAATCTGCCCCTGGTCGAGATA
ACGTTCAAAACCGGTGTCAAAAAAAAAAGATGACACCTGTGTCGACCTAC
AAAATCTTGACCAATTTTTATCGAAAAAACGAATTACTCCGACGCAACGA
TGAAAAAAAAAAATCTGCCAGATGGTTCGATCCGTCTGAAAGAGAGCTTT
CCGTCGATATATTTTATGTCTTGTAAAAGTAAGTGACCACCTCAAAACAA
CTCAATATATAAATGTCGAACTTTTGGAAAAATTCTTCTGCCTGGACTAT
AGGATGTATCCAATTTTTTAGATACCAATATTGAGAGTGTATGCCGCCTG
TACAGAGATACCCCCCCCCCCTGCCGTGTCGTTGGTAAAGCAGTGCACAG
CAGTCGCCCTCCTGGGTTACTTCTAGCCTCGCAGCCAACTAAAAATGGTC
GTTTGTCCAATGGTGTTTGCGTCCTCCAAAAGTGCATCAGGAATAACTTT
GTCCTGACAGGCGAGCAAATTCCCAATTCCACTGCCCTCCACGCGCGGTT
CCTTGAACAGGATGTTCTCGACCGGCAGACGCAAAGGGGTGAAGATGTTG
GGTACTGCCTCGCGACGCGTGTGCGCAACCAGGTGTATCATGAGGCCGCA
AAGGACCTCGGGTGCTATGGAGCCGGCAACCAGTGCAAGGCTGCGAAGTG
CATGAGTGCAGCTCTTGGCGTTTTCGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig146:373659..377937+

>mRNA_P-littoralis_Contig146.106.1 ID=mRNA_P-littoralis_Contig146.106.1|Name=mRNA_P-littoralis_Contig146.106.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig146:373659..377937+ (Pylaiella littoralis U1_48)
CTTCACCAGGCTAACATCATAGCCGGGATACGCATGCAGGATGTTCTCGA
CCGGCAGACGCAAAGGGGTGAAGATGTTGGGTACTGCCTCGCGACGCGTG
TGCGCAACCAGGTGTATCATGAGGCCGCAAAGGACCTCGGGTGCTATGGA
GCCGGCAACCAGTGCAAGGCTGCGAAGTGCATGAGTGCAGCTCTTGGCGT
TTTCGCC
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