mRNA_P-littoralis_Contig1452.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1452.1.1
Unique NamemRNA_P-littoralis_Contig1452.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1452.1.1 vs. uniprot
Match: A0A6H5JX36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX36_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 9.160e-20
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 2 
Query:    8 MSETDREALVALYNATGGASWNNNRNWNTDADLSKWHGVQADGDGRVVSLRLCNNNMQGVFQM 196
            M+ TDR+ALVALYNAT G  W+ NRNWNT A LS+WHGV  +  GRVV+L L  NN+QG+F M
Sbjct:    1 MASTDRDALVALYNATEGGRWSTNRNWNTGAPLSQWHGVHVNDQGRVVALELAENNLQGIFIM 63
[Close]
BLAST of mRNA_P-littoralis_Contig1452.1.1 vs. uniprot
Match: D8LFJ9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ9_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.240e-18
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 2 
Query:    8 MSETDREALVALYNATGGASWNNNRNWNTDADLSKWHGVQADGDGRVVSLRLCNNNMQGVFQMLLGTFERHD 223
            M++TDREALVALY A GGA W NNRNWNT A LS+WHGV+ +  GRVV+L L +NN+QG     LG     D
Sbjct:   25 MAQTDREALVALYTAIGGAKWRNNRNWNTSAALSQWHGVEVNSQGRVVNLFLWDNNLQGRIPTELGNLHMLD 96
[Close]
BLAST of mRNA_P-littoralis_Contig1452.1.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 4.100e-18
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:    8 MSETDREALVALYNATGGASWNNNRNWNTDADLSKWHGVQADGDGRVVSLRLCNNNMQGVFQMLLGTFERHDF 226
            M++ DREALVALYNATGGA W N RNWNT A LS+W+GV+ D  GRVV+L L  NN+QG     LG      F
Sbjct:   96 MAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEVDSQGRVVTLSLAGNNLQGTIPPELGQLTALQF 168
[Close]
BLAST of mRNA_P-littoralis_Contig1452.1.1 vs. uniprot
Match: A0A6H5KDU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDU0_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.360e-17
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 2 
Query:    8 MSETDREALVALYNATGGASWNNNRNWNTDADLSKWHGVQADGDGRVVSLRLCNNNMQG 184
            M++ DR+ALVALYNATGGA W N RNWNT A LS+W+GV+ D  GRVV+L L  NN+QG
Sbjct:  140 MAQPDRKALVALYNATGGAKWRNKRNWNTRAALSQWYGVEVDSQGRVVTLHLGGNNLQG 198
[Close]
BLAST of mRNA_P-littoralis_Contig1452.1.1 vs. uniprot
Match: A0A6H5JSF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 7.780e-17
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 2 
Query:    5 PMSETDREALVALYNATGGASWNNNRNWNTDADLSKWHGVQADGDGRVVSLRLCNNNMQGV 187
            PM++TDREAL A YNATGG +W +N NWN DAD S+W G++ +  GRVV L L +NN+QG+
Sbjct:   52 PMAQTDREALGAFYNATGGPNWEHNNNWNADADPSEWLGIETNDQGRVVRLSLGSNNLQGI 112
[Close]
BLAST of mRNA_P-littoralis_Contig1452.1.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 8.200e-17
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 2 
Query:    8 MSETDREALVALYNATGGASWNNNRNWNTDADLSKWHGVQADGDGRVVSLRLCNNNMQGVFQMLLG 205
            M++TDR+ALVALY ATGG +W  ++NW+TDADL  WHGV  +  GRVV L+L +NN++G     LG
Sbjct:    1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLG 66
[Close]
BLAST of mRNA_P-littoralis_Contig1452.1.1 vs. uniprot
Match: D8LL09_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL09_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 9.340e-17
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = 2 
Query:    8 MSETDREALVALYNATGGASWNNNRNWNTDADLSKWHGVQADGDGRVVSLRLCNNNMQGVFQMLLGTFER 217
            M +TDR+ALVALY+A GG +W NN NWN DADLSKWHG+  +  GRVV + L  NN+QG     LG   +
Sbjct:   51 MPQTDRDALVALYDAAGGFNWKNNGNWNADADLSKWHGININDQGRVVEVHLAANNLQGSIPEALGALSK 120
[Close]
BLAST of mRNA_P-littoralis_Contig1452.1.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.440e-16
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:    8 MSETDREALVALYNATGGASWNNNRNWNTDADLSKWHGVQADGDGRVVSLRLCNNNMQGVFQMLLGTFER 217
            M++TDR+ALVALYNATGGA W NN+NW T A LS+WHGV+ +  GRVV L L  NN++G     LG   R
Sbjct:   71 MAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRGPIPKELGALSR 140
[Close]
BLAST of mRNA_P-littoralis_Contig1452.1.1 vs. uniprot
Match: A0A6H5K3C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C2_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.140e-16
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = 2 
Query:    8 MSETDREALVALYNATGGASWNNNRNWNTDADLSKWHGVQADGDGRVVSLRLCNNNMQGVFQ 193
            M++TDR+ALVA+Y ATGG  W+ ++NW+TD+DL  WHGV  +  GRVV L L  NN++GV +
Sbjct:    1 MAQTDRDALVAMYRATGGEKWSTSQNWDTDSDLKTWHGVNVNDQGRVVKLELGFNNLEGVLR 62
[Close]
BLAST of mRNA_P-littoralis_Contig1452.1.1 vs. uniprot
Match: D7G496_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G496_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 3.890e-16
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 2 
Query:    8 MSETDREALVALYNATGGASWNNNRNWNTDADLSKWHGVQADGDGRVVSLRLCNNNMQGVFQMLLG 205
            M++TDR+ALVALYNATGG  W NN+NWNT A LS+W+ V+ +  GRVV L L NNN+QG   + +G
Sbjct:  125 MAQTDRKALVALYNATGGVKWKNNQNWNTSAALSQWYRVEVNSQGRVVKLSLWNNNLQGPIPVEVG 190
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1452.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JX36_9PHAE9.160e-2063.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFJ9_ECTSI1.240e-1859.72Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KVC7_9PHAE4.100e-1858.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDU0_9PHAE3.360e-1766.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSF1_9PHAE7.780e-1759.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK91_9PHAE8.200e-1756.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL09_ECTSI9.340e-1755.71Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D8LFK2_ECTSI1.440e-1658.57Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K3C2_9PHAE3.140e-1654.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G496_ECTSI3.890e-1659.09Hypothetical leucine rich repeat protein n=1 Tax=E... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1452contigP-littoralis_Contig1452:9324..10901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LL09
PFAMsLRRNT_2,LRR_1,LRR_6,LRR_8,XK-related
Model size926
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.16e-20
EggNOG OGsCOG4886@1|root,2R960@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size294
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789684.92699-UTR-P-littoralis_Contig1452:9323..93301680789684.92699-UTR-P-littoralis_Contig1452:9323..9330Pylaiella littoralis U1_48UTRP-littoralis_Contig1452 9324..9330 +
1680789684.959191-UTR-P-littoralis_Contig1452:10276..109011680789684.959191-UTR-P-littoralis_Contig1452:10276..10901Pylaiella littoralis U1_48UTRP-littoralis_Contig1452 10277..10901 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789684.9367473-CDS-P-littoralis_Contig1452:9330..95051680789684.9367473-CDS-P-littoralis_Contig1452:9330..9505Pylaiella littoralis U1_48CDSP-littoralis_Contig1452 9331..9505 +
1680789684.9501753-CDS-P-littoralis_Contig1452:10157..102761680789684.9501753-CDS-P-littoralis_Contig1452:10157..10276Pylaiella littoralis U1_48CDSP-littoralis_Contig1452 10158..10276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1452.1.1prot_P-littoralis_Contig1452.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1452 9331..10276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1452.1.1

>prot_P-littoralis_Contig1452.1.1 ID=prot_P-littoralis_Contig1452.1.1|Name=mRNA_P-littoralis_Contig1452.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
MSETDREALVALYNATGGASWNNNRNWNTDADLSKWHGVQADGDGRVVSL
RLCNNNMQGVFQMLLGTFERHDFYTQGLTMLLYILVDPFARYLAGTF*
back to top

mRNA from alignment at P-littoralis_Contig1452:9324..10901+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1452.1.1 ID=mRNA_P-littoralis_Contig1452.1.1|Name=mRNA_P-littoralis_Contig1452.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1578bp|location=Sequence derived from alignment at P-littoralis_Contig1452:9324..10901+ (Pylaiella littoralis U1_48)
GGTCCCCATGTCCGAGACGGACCGTGAGGCTTTGGTCGCCCTATACAACG
CGACTGGTGGGGCAAGCTGGAACAATAACAGAAACTGGAACACCGATGCC
GACCTCTCGAAATGGCACGGTGTTCAAGCCGACGGCGATGGCCGTGTTGT
ATCGCTGAGGCTATGCAACAACAATATGCAAGGTATTCCAAGGTGGAGTC
ATGAAAGCGTGTGCTTCAGTCGGGGGATGTGCTTGACCTTATCCAAGAGT
TCGTTGGCTGGAAGTAATCCTTTCATAAAATTGTACTCCGAGTATGGTTT
ACAGCAAGCTACAACCTCTTGAAAAAATAACAAATGAGTCAAAGAAAGAA
CACTTTGTGAGACAGGAGTAGACAAGCAGAAACATTGAATCAACACACGA
AAATAACCTCTCTCGCATCTGCCGACAACTAGTTGCACAAGACTGTTGTG
CCGACAGTTGGACGCAGAAAAATAACTATTAAACATCGCAAAATAACATC
TCACACTGACCACGTTATCATCATTTGTACAACTGAACAGGTAGTGGAAT
TTGTTTTAGATATGGCCACCAAAGAATTACTTGCACAAAAAGCTGTGAAG
ACGAATGGGGAAACAGCGACAGTTCCCATTACGGTTAGCTCTTCCTCAAC
CCTCTCTCGGTTTCGGAACTAGCCGGCAGTTGGATCCAGTCTTGGTGCCA
TTAGGTAGACATCTTCCGCTAGGACTTGAGGGTGTGGATTCAGCTGTAGC
GAGACCTTGCTTGTTCTTCATTTGTCTGCATTGCGTGCGACACCTCACAT
CTGCGCTTCTGCTCTTATTCCAATCGCAAATCAGGTGTGTTTCAAATGCT
ATTGGGTACATTCGAACGACACGACTTCTACACCCAGGGTTTAACAATGC
TGCTGTACATCCTCGTCGATCCTTTCGCCCGGTACTTGGCTGGTACCTTC
TGAACCAGATATTTCGATACGAAGTATAATGGTGTACAAGATCGACCCAC
TTCGATCCCAGGATCCAACAGAACAGGGAAGTATTATTTGGTGCTGAGAG
AGGTTCAACAAAAGACTACACAGAGATTCTGTCCTACATAAATAGCTTTC
ACCCACATCCTGTACAGACAACAAATTCCGCTGAAGATCCTCTCAATTAC
GGATAGCCTAGTATCGCGTAGTAACAGATCCAATATCAAACGCAACTTGG
CAACTACAATGATCACAGCAGATATAAATAGCATTCTGGCCGTATGTTGC
CAGACACTGCGAGAGTTCCTTTTGGAGGAGGACTTATTTAGATTGAACAC
ACAGAGACGGGGGACCTCCCTGAATTGGTGTTGACCCACAACAAAAGTTG
TGGGGAGTACTCGTGATTTGGCACAATATCTAACAGGTGATTTTGTTTTC
TGCGCCACGAGAAATTGTCTTGAAAAACGGCTTCTTCTCACAGACCCTGC
GGCTGGCTAAAATCTCTTCTCTGTATTGAAGTTAACCCATTTTATTCGGG
CCCCATGTGTGGTTGTACCATACGCACAAGGGGGAACACTCAAGACTCGA
GTGTCCCTTGTACAAATAACAAATAAAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1452:9324..10901+

>mRNA_P-littoralis_Contig1452.1.1 ID=mRNA_P-littoralis_Contig1452.1.1|Name=mRNA_P-littoralis_Contig1452.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig1452:9324..10901+ (Pylaiella littoralis U1_48)
ATGTCCGAGACGGACCGTGAGGCTTTGGTCGCCCTATACAACGCGACTGG
TGGGGCAAGCTGGAACAATAACAGAAACTGGAACACCGATGCCGACCTCT
CGAAATGGCACGGTGTTCAAGCCGACGGCGATGGCCGTGTTGTATCGCTG
AGGCTATGCAACAACAATATGCAAGGTGTGTTTCAAATGCTATTGGGTAC
ATTCGAACGACACGACTTCTACACCCAGGGTTTAACAATGCTGCTGTACA
TCCTCGTCGATCCTTTCGCCCGGTACTTGGCTGGTACCTTCTGA
back to top