mRNA_P-littoralis_Contig145.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig145.20.1
Unique NamemRNA_P-littoralis_Contig145.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig145.20.1 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 6.280e-25
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:  121 GVVAGSGTVTSEGLDVEMARKMTKSLLFALTKGTLVDLMKAGGGDSKVWRKKDFLVDALLSIVGGSSED 327
            GVVAGSGTVT+EGL VE  RKMTK  LF LTKGTLVD +KA GGD+KVWRKK+FLV+ALLS+ GGSSED
Sbjct:  291 GVVAGSGTVTNEGLAVETVRKMTKPQLFELTKGTLVDHIKAAGGDAKVWRKKEFLVNALLSVAGGSSED 359
[Close]
BLAST of mRNA_P-littoralis_Contig145.20.1 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 5.170e-19
Identity = 53/67 (79.10%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 SKGELALRQQLRATSAKGAATAKRAAPVGGGTDGTDQLAGGVVAGSGTVTSEGLDVEMARKMTKSLL 201
            SKGELALRQ LRATSAKG ATAK  APVGGG DGT +LAGGV+AGSGTVT+EGL VE  RKMTK  L
Sbjct:  314 SKGELALRQNLRATSAKGEATAKGVAPVGGGIDGTSRLAGGVMAGSGTVTNEGLAVETVRKMTKPQL 380
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig145.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9K2_9PHAE6.280e-2578.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW14_9PHAE5.170e-1979.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig145contigP-littoralis_Contig145:31034..31361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size329
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789681.1501713-CDS-P-littoralis_Contig145:31033..313601680789681.1501713-CDS-P-littoralis_Contig145:31033..31360Pylaiella littoralis U1_48CDSP-littoralis_Contig145 31034..31360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig145.20.1prot_P-littoralis_Contig145.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig145 31034..31360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig145.20.1

>prot_P-littoralis_Contig145.20.1 ID=prot_P-littoralis_Contig145.20.1|Name=mRNA_P-littoralis_Contig145.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
SKGELALRQQLRATSAKGAATAKRAAPVGGGTDGTDQLAGGVVAGSGTVT
SEGLDVEMARKMTKSLLFALTKGTLVDLMKAGGGDSKVWRKKDFLVDALL
SIVGGSSED
back to top

mRNA from alignment at P-littoralis_Contig145:31034..31361+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig145.20.1 ID=mRNA_P-littoralis_Contig145.20.1|Name=mRNA_P-littoralis_Contig145.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=328bp|location=Sequence derived from alignment at P-littoralis_Contig145:31034..31361+ (Pylaiella littoralis U1_48)
TCGAAGGGCGAGTTAGCCCTGAGACAACAGCTTAGAGCCACCAGTGCGAA
GGGGGCGGCCACAGCGAAGAGGGCGGCTCCAGTTGGTGGGGGGACTGATG
GAACGGACCAGTTGGCGGGTGGTGTCGTGGCAGGCTCGGGTACCGTGACG
AGTGAGGGCCTTGATGTTGAGATGGCGAGAAAGATGACCAAGTCACTGTT
GTTCGCACTGACCAAGGGCACACTAGTGGACCTTATGAAAGCTGGGGGTG
GCGACTCCAAGGTGTGGAGAAAGAAGGATTTTTTGGTCGACGCTTTGCTT
AGCATTGTCGGCGGCTCTAGCGAAGACG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig145:31034..31361+

>mRNA_P-littoralis_Contig145.20.1 ID=mRNA_P-littoralis_Contig145.20.1|Name=mRNA_P-littoralis_Contig145.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig145:31034..31361+ (Pylaiella littoralis U1_48)
TCGAAGGGCGAGTTAGCCCTGAGACAACAGCTTAGAGCCACCAGTGCGAA
GGGGGCGGCCACAGCGAAGAGGGCGGCTCCAGTTGGTGGGGGGACTGATG
GAACGGACCAGTTGGCGGGTGGTGTCGTGGCAGGCTCGGGTACCGTGACG
AGTGAGGGCCTTGATGTTGAGATGGCGAGAAAGATGACCAAGTCACTGTT
GTTCGCACTGACCAAGGGCACACTAGTGGACCTTATGAAAGCTGGGGGTG
GCGACTCCAAGGTGTGGAGAAAGAAGGATTTTTTGGTCGACGCTTTGCTT
AGCATTGTCGGCGGCTCTAGCGAAGAC
back to top