mRNA_P-littoralis_Contig145.17.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig145.17.1
Unique NamemRNA_P-littoralis_Contig145.17.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig145.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig145contigP-littoralis_Contig145:27506..29188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size266
Hectar predicted targeting categoryother localisation
Exons2
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789680.655578-CDS-P-littoralis_Contig145:27505..276991680789680.655578-CDS-P-littoralis_Contig145:27505..27699Pylaiella littoralis U1_48CDSP-littoralis_Contig145 27506..27699 +
1680789680.6674833-CDS-P-littoralis_Contig145:29116..291861680789680.6674833-CDS-P-littoralis_Contig145:29116..29186Pylaiella littoralis U1_48CDSP-littoralis_Contig145 29117..29186 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig145.17.1prot_P-littoralis_Contig145.17.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig145 27506..29186 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig145.17.1

>prot_P-littoralis_Contig145.17.1 ID=prot_P-littoralis_Contig145.17.1|Name=mRNA_P-littoralis_Contig145.17.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
GSHSKKACTAHAGMVQDHRDRALSTRPSSYTHPIARASTGLALGVRSSTI
ICPAGGEERRPNRQRKWIHPQRIATTARMEVILQRQSK
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mRNA from alignment at P-littoralis_Contig145:27506..29188+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig145.17.1 ID=mRNA_P-littoralis_Contig145.17.1|Name=mRNA_P-littoralis_Contig145.17.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1683bp|location=Sequence derived from alignment at P-littoralis_Contig145:27506..29188+ (Pylaiella littoralis U1_48)
GGTTCTCATTCTAAGAAGGCGTGCACGGCACATGCGGGGATGGTACAGGA
CCATAGGGACAGGGCTCTCTCCACCCGCCCTTCATCGTACACCCATCCGA
TAGCTCGAGCATCTACTGGTCTCGCACTCGGTGTCCGCTCTAGCACCATC
ATATGCCCGGCTGGCGGCGAAGAAAGGAGGCCCAATCGTCAACGGTGAGT
CGAGAAAAATGAAAACATGACCATAGACGATAAGAGGGTAAAGGTCTAAC
CGTCTAGCATGCCCTCCTTGTCGCCCTCCCGCTCGTCTCTGAGCGCAGGG
GTCGCTGCGCAACAAGGTTAGGAGCATAGAGTGTGTTGTCATCCCATATT
CTCTGGCACACTAGTCTGCACCTTGCGGTTCAAACTACAGGCTAGGCCCA
TCGACGGGGTCACACAGGAGGAAGGGCAACACAGGAGGAGTTACCCCCAC
CTTCTTTGTGCGGTACATGCGTGAGATTTTTTTTCGCGAGCAGGGATCCG
CGGTCCCTACCCTCGTCGGCGAAGCCGAATCTGCTTTTACTAACAGCATA
GCCGCTTTCAAAGTAGCAGAGGAACACGTTCACCGGGAATCGAACCCCCG
TTCCTCTGCATCTAGAGTGTGTAAGTCTGGCTTTCTCGGGCAGAAGTCCG
ATTATCAAATGGTGTAGTGTACGCAGAGCAATGTCCAAACTTCGGACCCA
TAACCGTTACAGTGCCGTATCTCTCCGCTTGGGCACACTAAAATGGACTG
GTTTGTCAAGCAGTTTGTTTGCACAATCAGAACGCTGTCCTCCTGCTGCA
ACAGCTGAACCCCGCAGCATAACCTCCCCAACATGTTGCACAGCACCACC
TCAGTAGAAGCTGGGGGAGTGCTGCACACCCTGTCATGTAGCATAGCCGC
GTCAGACGCCTTTTTTGTCACTTGTGTCTCAATATTGTCACGGACCCACC
GCTGTGTTCGACTCAAGATAACACACCCCCTAGACCGACAATCAAAGCAC
GATTATCGGCAACGAAGCGACGAGGAAGAGGACTTACGTGTCGAAACGAT
ACCCTGTGAGAGAGCTCTCAACCTGCCGGTAGCAACGCGGACGTTTTCCG
CGCTACCACTATTTCAGCTGTTGTTGATAAGTCGAGCTACGGAAATCGGT
CCAGGTGATGTGTTGTCTTGCGTCGTACCACGGCCGTGGTAGGTGTGTTA
TCCTGCGTCGTATAGCGTATGCACCCCCCCGGCAGCAGCATGTTGTTCGC
ATACATAGCTACGCAGCTGATGCTTCCGGCGTCCATCCTTGTTCTGCATT
ATCATGTACTAGAATTAGCCTCCATGTTGGGTTGGGTCCTCACGAAGGGC
CATCAAGCGGTCAACCAGCACTTCAGCCGCGTTCATGTGGTAGCTCCTTC
CCCTTCCTGGTTTCAAATGAGCTTATGTATACCCTCCTATCGCTGCCTTC
CTCATCTCTGGTGTCAAGAGGTTGACAGGAAAAGCCAATTTTTATTTTTA
ATCCAAGCGCTTTCTCCTTCTGGGTGAGAGAAAAGTACTCCTGCATTCAG
CCCATGTTATCTACTAACTCCCCTTCTTTGTTGTTGTTTTCTCTCTCTAT
TCCTCCCGTAGGAAGTGGATTCACCCGCAGAGGATAGCGACGACCGCGCG
CATGGAGGTGATTCTCCAACGCCAATCCAAGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig145:27506..29188+

>mRNA_P-littoralis_Contig145.17.1 ID=mRNA_P-littoralis_Contig145.17.1|Name=mRNA_P-littoralis_Contig145.17.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig145:27506..29188+ (Pylaiella littoralis U1_48)
GGTTCTCATTCTAAGAAGGCGTGCACGGCACATGCGGGGATGGTACAGGA
CCATAGGGACAGGGCTCTCTCCACCCGCCCTTCATCGTACACCCATCCGA
TAGCTCGAGCATCTACTGGTCTCGCACTCGGTGTCCGCTCTAGCACCATC
ATATGCCCGGCTGGCGGCGAAGAAAGGAGGCCCAATCGTCAACGGAAGTG
GATTCACCCGCAGAGGATAGCGACGACCGCGCGCATGGAGGTGATTCTCC
AACGCCAATCCAAG
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