mRNA_P-littoralis_Contig1446.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1446.2.1
Unique NamemRNA_P-littoralis_Contig1446.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1446.2.1 vs. uniprot
Match: A0A6H5LCY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCY2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.340e-10
Identity = 33/64 (51.56%), Postives = 49/64 (76.56%), Query Frame = 3 
Query:    6 MSPSAERMVAAGFNRVSSSVVETLLIDDVVWYRAVIAAIQQAHTGQN-LTEKQLQNKVKQEYSN 194
            M  + ERMVAAG NR+SS+VV+TLL+D+VVWYR+VI A+Q+ H G   +T  Q+   +K++++N
Sbjct:  126 MPQATERMVAAGCNRISSNVVKTLLVDEVVWYRSVIHALQEQHQGSTAMTNDQILKAIKKDFAN 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1446.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LCY2_9PHAE1.340e-1051.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1446contigP-littoralis_Contig1446:8371..9292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size198
Hectar predicted targeting categoryother localisation
Exons2
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789680.432258-CDS-P-littoralis_Contig1446:8370..85291680789680.432258-CDS-P-littoralis_Contig1446:8370..8529Pylaiella littoralis U1_48CDSP-littoralis_Contig1446 8371..8529 -
1680789680.4430842-CDS-P-littoralis_Contig1446:9253..92921680789680.4430842-CDS-P-littoralis_Contig1446:9253..9292Pylaiella littoralis U1_48CDSP-littoralis_Contig1446 9254..9292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1446.2.1prot_P-littoralis_Contig1446.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1446 8371..9292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1446.2.1

>prot_P-littoralis_Contig1446.2.1 ID=prot_P-littoralis_Contig1446.2.1|Name=mRNA_P-littoralis_Contig1446.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=66bp
ESCHLPRSAWSQQGSTGSLRVSWRLCSLTTSSGIELLLLRFSKPIPAKTS
QKNSFRTRSSRNIAT*
back to top

mRNA from alignment at P-littoralis_Contig1446:8371..9292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1446.2.1 ID=mRNA_P-littoralis_Contig1446.2.1|Name=mRNA_P-littoralis_Contig1446.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=922bp|location=Sequence derived from alignment at P-littoralis_Contig1446:8371..9292- (Pylaiella littoralis U1_48)
GAGTCATGTCACCTTCCGCGGAGCGCATGGTCGCAGCAGGTGAAGCGTTC
TGCAAATGTGCTGTCATGTTATCTACCATTCATTGCAGATGCCAACCTAC
ACCGTCGAGTACATGCGTGCTTGGGTTGACTTTGTGTGGCAAACGAAATC
CGTTCTCCTCTTTTTGCTCCGAGTTCGTTCTGAAATTTTCCGATGCAGTA
CGTGCATATCTCCAGATAGATGAGGATCTATCATACTGTAGATCACTGGC
GGCGTACATACGATAGCACACAAATGATGCTGGCCCTTTATTCGAAGTAT
ACACACCTACAGGTTGTGTCCCGTCTCACAGTCATCTGTCTGTCTATAAG
TATTTGTCCGACTCGTCAGATAGTATCGTACACCGTTCGTTGTTGTGCCC
ACAAGATAATGTTTTTACACGCAACGTCGCGGCCGAAGTTTTGTGATACT
TCGTACAACACGAAATTTTCCAGTCAGACCCTGTTGTTGTGTTGTTTCCT
GAATACGTAGTACAAGCCAAAAATCACGAAGTACAACATTAGAACCCGCT
GCCAAAGAACAGGCCCATCCAGCATGCCTCCGATGAGAGATGTTTGGTTG
CTTGATTCTCACATTAGCTCATCGAAATGTGCTCCTGCCGGAAGCTACCC
TAATTTTTGTATTACGATAGTGATATTTCTGCTCTTCCCAAAACTTTCAC
TCTGTGTCTGACAGACATCATATGTTTGATACTTGCCTCTGTTGTTGCTA
TTGTGTTGCCCAGGGTTCAACAGGGTCTCTTCGAGTGTCGTGGAGACTTT
GCTCATTGACGACGTCGTCTGGTATAGAGCTGTTATTGCTGCGATTCAGC
AAGCCCATACCGGCCAAAACCTCACAGAAAAACAGCTTCAGAACAAGGTC
AAGCAGGAATATAGCAACGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1446:8371..9292-

>mRNA_P-littoralis_Contig1446.2.1 ID=mRNA_P-littoralis_Contig1446.2.1|Name=mRNA_P-littoralis_Contig1446.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig1446:8371..9292- (Pylaiella littoralis U1_48)
GAGTCATGTCACCTTCCGCGGAGCGCATGGTCGCAGCAGGGTTCAACAGG
GTCTCTTCGAGTGTCGTGGAGACTTTGCTCATTGACGACGTCGTCTGGTA
TAGAGCTGTTATTGCTGCGATTCAGCAAGCCCATACCGGCCAAAACCTCA
CAGAAAAACAGCTTCAGAACAAGGTCAAGCAGGAATATAGCAACGTGA
back to top