mRNA_P-littoralis_Contig1442.3.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1442.3.2 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 375 bits (964), Expect = 1.580e-110 Identity = 238/489 (48.67%), Postives = 287/489 (58.69%), Query Frame = 1
Query: 25 TTDGFEWTSDSAEAIGRTLSFGFAGY-----------------FE----DD----------LESADVAGLQSFDLTSYVTDLVTSVTITMRGTGSGADGFKLLDARFLGTQVDNPSDTFYVGTTRIQYWGGFAYPDFVGEGTGDQKAIMGAICAVKKASFDGVDCVGGEEATTGKVSR------------MRHAAVPGAACSCVLSSIFTLKQLRSIIYGLVVRSYLPSRDFCETVGL----LCLHHEIQFSRCAPAVYSLPHVLHKLRLHTSPTRLYSTSCQRPCRPPWYRFLLRALRANITVEDIEIRFCDGDAAVVRGSTTVNIDAGRYDEEYLPWTIGRSRGTGLIVDASTNVWVRRHTIYDNGVAGLHIMNSNNFTFEATID----SDGSV--GDGNVGSLDGQQPIEIIIENSVLLKFQDMRVQSVNDPVMTISNSTGVSFTNTGLSRVETGTCVIKTDEFSEVTIDAEEDELFFEDNCYVKV 1332
TTD FEW+S+S EA+ RTLSF Y FE DD LES D G Q F+L + D VT VTI M+GTGSGA GFKL +ARFLGT +DNPS+TFYVG+T ++ W YPDFV EGTGDQKAIMGAICAVKKASFDGVDCVGG++A TG+VS M+ A+ S S T L G + + D L + H++ + S PAV L V + T NIT + DGDA VVR S VNIDAG YDEEY PWTIG+SRGTG++VD+S +VW+RR+T DNG+AG+H+ SNNFTFEATI +D V G+GNVGSLDGQQPIE+I+E+S L+KFQDM+VQSVNDPVMT+S S+GVSF N G S VE+GTCVI+TD SEVT ++ EL + CYVKV
Sbjct: 691 TTDAFEWSSESDEAMDRTLSFVLNSYALMEAVELQFPVGETYKFELTLYDDGDEIVSTFTGLESVDSEGWQRFEL-GTIDDPVTEVTIIMKGTGSGAPGFKLANARFLGTAIDNPSNTFYVGSTYVESWRSDRYPDFVAEGTGDQKAIMGAICAVKKASFDGVDCVGGDDAATGEVSMPMGEWFVDGNIFMKSGVYLDASFSIDDSPYTTDIILEDGAAGKTDTAAIIVMDGISDARLSEVWIYGHYDSETSNDTPAVDGLGSVGLSITGST----------------------------NITCRYASVYSSDGDALVVRDSEMVNIDAGPYDEEYRPWTIGQSRGTGIVVDSSDSVWIRRYTTSDNGIAGIHVSGSNNFTFEATIADECWTDDCVLEGEGNVGSLDGQQPIEVIVESSTLVKFQDMKVQSVNDPVMTVSGSSGVSFDNCGFSNVESGTCVIQTDATSEVTT-GDDPELSLDGTCYVKV 1149
BLAST of mRNA_P-littoralis_Contig1442.3.2 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE) HSP 1 Score: 374 bits (959), Expect = 1.000e-109 Identity = 234/505 (46.34%), Postives = 283/505 (56.04%), Query Frame = 1
Query: 19 EPTTDGFEWTSDSAEAIGRTLSFGFAGYF----------EDDLESADVAGLQSFDLT--SYVT----------------------DLVTSVTITMRGTGSGADGFKLLDARFLGTQVDNPSDTFYVGTTRIQYWGGFAYPDFVGEGTGDQKAIMGAICAVKKASFDGVDCVGGEEATTGKVSR------------MRHAAV------------------PGAACSCVLSSIFTLKQLRS--IIYGLVVRSYLPSRDFCETVGLLCLHHEIQFSRCAPAVYSLPHVLHKLRLHTSPTRLYSTSCQRPCRPPWYRFLLRALRANITVEDIEIRFCDGDAAVVRGSTTVNIDAGRYDEEYLPWTIGRSRGTGLIVDASTNVWVRRHTIYDNGVAGLHIMNSNNFTFEATIDSD-GSVGDGNVGSLDGQQPIEIIIENSVLLKFQDMRVQSVNDPVMTISNSTGVSFTNTGLSRVETGTCVIKTDEFSEVTIDAEEDELFFEDNCYVKV 1332
EPTTDGFEW+S+S EAI ++L+ AGY E D DV + D T +Y T VTS+ I M+GTGSGA GF +LDA LGT++DNPSDTF+VG+T I+YWGG YPDFVG G+GDQ AI GAIC VKK ++DGV+CV ++ TG V M+ + GA + + +I + +R I + +Y P D V L S C V S NIT E ++IR+C GDA VVR ST VNIDAGRYDEEYLPWTIG S GTGLIVD S ++WVRR T Y+N VAGLHIM SNNFTFEATI S+ GS G+GNVGS+DGQQPIE+I+ S L+ FQDM+VQSVNDPVMTI++ST VSFTN G S V +GTC I+TD+ S VTIDA+EDEL E CYVKV
Sbjct: 704 EPTTDGFEWSSNSNEAIDQSLTLSLAGYHTVTELQLMFPEGDTYKFDVTLFNNLDGTGEAYTTITGLESXXXXXXXXXXXXXXANQYVTSIGIEMKGTGSGAPGFAMLDALVLGTKIDNPSDTFHVGSTFIEYWGGDGYPDFVGSGSGDQNAINGAICGVKKGTYDGVNCVDVDDTATGTVDLSWGAYYVNGNIFMQSGVLLLGSFGDDDPHTTDIVLEEGAEGNTDIDAIVVMDGIRDAWIEKVWIQGNYDPETDGISAVSGLG-------SACLSVVNS---------------------------------------QNITCEGVDIRYCSGDALVVRDSTLVNIDAGRYDEEYLPWTIGLSGGTGLIVDTSDSIWVRRTTFYENAVAGLHIMGSNNFTFEATIASEEGSEGEGNVGSVDGQQPIEVIVGTSSLVTFQDMKVQSVNDPVMTITDSTTVSFTNGGYSNVPSGTCTIQTDDPSTVTIDADEDELVLEGTCYVKV 1162
BLAST of mRNA_P-littoralis_Contig1442.3.2 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 364 bits (934), Expect = 3.060e-106 Identity = 223/481 (46.36%), Postives = 292/481 (60.71%), Query Frame = 1
Query: 22 PTTDGFEWTSDSAEAIGRTLSFGFAGY---------------------FEDD------------LESADVAGLQSFDLTSYVT--DLVTSVTITMRGTGSGADGFKLLDARFLGTQVDNPSDTFYVGTTRIQYWGGFA--YPDFVGEGTGDQKAIMGAICAVKKASFDGVDCVGGEEATTGKVSRMRHAAVPGAACSCVLSSIFTLKQLRSIIYGLVVRSYLPSRDFCETVGLLCLHHEIQFSRCAPAVYSLPHVLHKL------RLHTSPTRLYSTSCQRPCRPPWYRFLLRALRA-NITVEDIEIRFCDGDAAVVRGSTTVNIDAGRYDEEYLPWTIGRSRGTGLIVDASTNVWVRRHTIYDNGVAGLHIMNSNNFTFEATIDSDGSVGDGNVGSLDGQQPIEIIIENSVLLKFQDMRVQSVNDPVMTISNSTGVSFTNTGLSRVETGTCVIKTDEFSEVTIDAEEDELFFEDNCYVKV 1332
PTTD F+WT+DS +AIGRT+ F A Y DD ESAD A QSFDL+ ++ +T + I ++GTGSGA GF +LD R +GT +DNP+DT YVG+T I+ W G YPDFV EGTGDQK IM AIC VKKASFDGVDCVGG++A TG V V V +IF ++S ++ + S+ S D G++ L A+ + + + + R H P TS P P L + + NIT+ D EIRF DGDA VVR S ++IDAG Y+E Y PW++ SRGTGLIVD+ +++VRRHT+Y+NGVAG+HI+ +NNFTF+ATI + +VG+GNVG+LDGQQPI++IIE+S L+ F D+RVQS NDP+M +S+S+ VSF N GLS VE CVI+ D+ S VTIDA+EDEL + +CYVKV
Sbjct: 694 PTTDAFDWTTDSDDAIGRTVEFELAWYAMVDAVEIKFPVGDTYKFDLELNDDQIRGEILKTITGFESADTADWQSFDLSQHLDADQFLTEINIVVQGTGSGAPGFAMLDIRVMGTAIDNPTDTVYVGSTFIERWTGLTDRYPDFVAEGTGDQKIIMEAICTVKKASFDGVDCVGGDDAATGTV-------VLPQGSWYVDGNIF----MKSGVF--LDGSF--SEDSPYFTGII-LEEGAAGKTDIDAMVVMDGISNAMTDNIWIRGHYDP----DTSNDTPAVPGLGSTGLSVVGSTNITLRDAEIRFLDGDALVVRDSNMISIDAGEYEELYSPWSLASSRGTGLIVDSCDSIYVRRHTLYENGVAGIHIVGTNNFTFDATIGEESTVGEGNVGNLDGQQPIDVIIESSTLVTFNDLRVQSSNDPIMMVSDSSTVSFNNLGLSLVEADACVIQADDPSTVTIDADEDELTLDGSCYVKV 1154
BLAST of mRNA_P-littoralis_Contig1442.3.2 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 359 bits (922), Expect = 5.160e-106 Identity = 222/493 (45.03%), Postives = 281/493 (57.00%), Query Frame = 1
Query: 25 TTDGFEWTSDSAEAIGRTLSFGFAGYF------------------------EDDL-------ESADVAGLQSFDLTSYVTDLVTSVTITMRGTGSGADGFKLLDARFLGTQVDNPSDTFYVGTTRIQYWGGFAYPDFVGEGTGDQKAIMGAICAVKKASFDGVDCVGGEEATTGKVSR-----------MRHAAVPGAACSCVLSSIFTLKQL-------RSIIYGLVVRSYLPSRDFCET--VGLLCLHHEIQFSRCAPAVYSLPHVLHKLRLHTSPTRLYSTSCQRPCRPPWYRFLLRALRANITVEDIEIRFCDGDAAVVRGSTTVNIDAGRYDEEYLPWTIGRSRGTGLIVDASTNVWVRRHTIYDNGVAGLHIMNSNNFTFEATI------DSDGSVGDGNVGSLDGQQPIEIIIENSVLLKFQDMRVQSVNDPVMTISNSTGVSFTNTGLSRVETGTCVIKTDEFSEVTIDAEEDELFFEDNCYVKV 1332
TTD F W S+S AI LSF Y ED++ ES D G Q F+L + D VT + I M+GTGS A GFKL +ARF GT +DNPSDTFYVG+T + W YPDFV EGTGDQKAIMGAICAVKKASFDGVDCVGG++A TG+VS + V A + S +T + ++ ++V + + T +G +++ + S P V+ L V + T NIT D + DGDA VVR S +NID+G YD++YLPWTIG+SRGTG++VD+S +VWVRR+T YDNGVAG+H+ SNNFTFEATI + G+GNVGSLDGQQPIE+++E+S L+KFQDM+VQSVNDPV+ +S S+GVSF N G S VETGTCVI+TD SEVT ++ EL + CYVKV
Sbjct: 506 TTDAFVWASESDAAIDEKLSFVLKSYAVMEAVELQFPIGETYKFELTLYDDEDEIVSTFTGFESVDSEGWQRFEL-GTIDDPVTEIAIVMKGTGSEAPGFKLANARFFGTAIDNPSDTFYVGSTYVTEWNSDRYPDFVAEGTGDQKAIMGAICAVKKASFDGVDCVGGDDAATGEVSMPMGEWFVDGNIFMKSGVHLHAWFSIDDSPYTTDIILEDGAAGKTDTAAMIVMDNISNARLSNTWIIG----NYDSETSNDTPTVHGLGSVGLSITGST----------------------------NITCIDASVYSSDGDALVVRDSQMINIDSGPYDDDYLPWTIGQSRGTGIVVDSSDSVWVRRYTTYDNGVAGIHVSGSNNFTFEATIADKCWGEDCVLEGEGNVGSLDGQQPIEVVVESSTLVKFQDMKVQSVNDPVIVVSGSSGVSFDNCGFSNVETGTCVIQTDTTSEVTT-GDDPELSLDGTCYVKV 964
BLAST of mRNA_P-littoralis_Contig1442.3.2 vs. uniprot
Match: D7FUI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI8_ECTSI) HSP 1 Score: 337 bits (865), Expect = 7.660e-103 Identity = 211/459 (45.97%), Postives = 271/459 (59.04%), Query Frame = 1
Query: 4 IIVLQEPTTDGFEWTSDSAEAIGRTLSFGFAGYFEDDLESADV----AGLQSFDLTSYVTDLVTSVTITMRGTGSGADGFKLLDARFLGTQVDNPSDTFYVGTTRIQYWGGFAYPDFVGEGTGDQKAIMGAICAVKKASFDGVDCVGGEEATTGKV--SRMRHAAVPGAACSCVLSSIFTLKQLRSIIYGLVVRSYLPSRDFCETVGLLCLHHEIQFSRCAPAVYSLPHVLHKLRLHTSPTRLYSTSCQRPCRPPWYRFLLRALRANITVEDIEIRFCDGDAAVVRGSTTVNIDAGRYDE-------EYLPWTIGRS--RGTGLIVDASTNVW-VRRHTIYDNGVAGLHIMNSNNFTFEATIDSDGSVGDGNVGSLDGQQPIEIIIENSVLLKFQDMRVQSVNDPVMTISNSTGVSFTNTGLSRVETGTCVIKTDEFSEVTIDAEEDELFFEDNCYVKV 1332
I + +EPTTDGFEW+SDS EAI RTL AGYF + V AG QSFDLT + VTS+ I M+GTGSGA GF +LD LG ++DNPSDTFYVG+T I++W G PDFVG G+GDQ AI GAICAVKK +FDGVDC+ +E TG V S +R + ++CS SS +++ R SR + L F + +P LH+ P ++ C P PP +R + L+ N+T E ++IR+C GDA VVR ST V+IDAGRYDE +Y P RS R GL + + +V RR +G+ ++ +++ G G GNVGS+DGQQPIE+I+E+S L+KFQD VQSVNDPVMTI++ST VSFTN G S V +GTC I+ D+ S VTIDA+EDEL E CYVKV
Sbjct: 50 ISISEEPTTDGFEWSSDSNEAISRTLFLSLAGYFMAERHGRGVHDHHAGFQSFDLTGFADQYVTSIGIEMKGTGSGAPGFAVLDPMVLGAKIDNPSDTFYVGSTFIEFWSGNGLPDFVGTGSGDQNAINGAICAVKKGTFDGVDCIDMDETATGTVDLSWVRTSWTATSSCSLAFSSSANRRRVDPRELSSRDRHRQQSRRIWPRIDLPLGCELPDFVVARLTLMEMPVTAFSASLHSLPK---ASLCLVPSVPPLHRSMPNTLQ-NVTCEGVDIRYCSGDALVVRDSTLVSIDAGRYDEHEGVPSVDYRPKPRHRSDSRHVGLRLSSPAHVTRQRRGGSPHHGLEQFYLRSNHRR---------GPEGAGNVGSVDGQQPIEVIVESSSLVKFQDKPVQSVNDPVMTITDSTTVSFTNGGYSNVPSGTCTIQADDPSTVTIDADEDELVLEGTCYVKV 495
BLAST of mRNA_P-littoralis_Contig1442.3.2 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI) HSP 1 Score: 231 bits (588), Expect = 8.340e-60 Identity = 167/411 (40.63%), Postives = 213/411 (51.82%), Query Frame = 1
Query: 115 LESADVAGLQSFDLTSYVTDLVTSVTITMRGTGSGADGFKLLDARFLGTQVDNPSDTFYVGTTRIQYWGGFAYPDFVGEGTGDQKAIMGAICAVKKASFDGVDCVGGEEATTGKVS-RMRHAAVPGAACSCVLSSIFTLKQLRSIIYGLVVRSYLPSRDFCET-VGLLCLHHEIQFSRCAPAVYSLPHVLHKLRLHTSPTRLYS--TSCQRPCRPPWYRFLLRALRA-NITVEDIEIRFCDGDAAVVRGSTTVNIDAGRYDEEYLPWTIGRSRGTGLIVDASTNVWVRRHTIYDNGVAGLHIMNSNNFTFEATIDSDGSVGDGNVGSLDGQQPIEIIIENSVLLKFQDMRVQSVNDPVMTISNSTGVSFTNTGLSRVETGTCVIKTDEFSEVTIDAEEDELFFEDNCYVKV 1332
LE A QS DLT + VTS+ + + G SG F L+DAR LGT++DNP+DTFYVG+T I W G PDFVG+GTGDQ AI AICAVKK ++DGVDCVG +++ TG V V G + S +F + R + +L T V + + I +R L +H LY TS P P + + + NIT D + FCDGDA VVR S+ VNIDAG YDE ++ G + + + IY G VGSL+GQQPIE+I+E S L+ FQ+M V+SVNDPVMTIS+ST VSFTN G V +GTC+I+TD+ S VTID +EDEL E CYVKV
Sbjct: 600 LEITGTAEYQSIDLTGFAGQYVTSIAVHVEG--SGGSEFPLIDARILGTKIDNPTDTFYVGSTFIPEWYGHGDPDFVGQGTGDQNAINAAICAVKKGTYDGVDCVGMDDSATGTVVLAFGEYHVDGNIF--MKSGVFLKGRYRFDDSPYNIDIFLEEGAPGNTDVDAMIVMDGISDARIGD-----------LWIHG----LYDPDTSNDSPAVPGLGSTGVSIVDSQNITCADTWVDFCDGDAMVVRSSSVVNIDAGYYDEY-------KATGWRVCTSWTPTTLPSKPPIYVGS-------------------------QGQVGSLEGQQPIEVIVEGSSLINFQEMWVRSVNDPVMTISDSTAVSFTNDGSYSVASGTCIIQTDDPSTVTIDPDEDELILEGTCYVKV 959 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1442.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1442.3.2 >prot_P-littoralis_Contig1442.3.2 ID=prot_P-littoralis_Contig1442.3.2|Name=mRNA_P-littoralis_Contig1442.3.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=383bp MRGTGSGADGFKLLDARFLGTQVDNPSDTFYVGTTRIQYWGGFAYPDFVGback to top mRNA from alignment at P-littoralis_Contig1442:4603..11529- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1442.3.2 ID=mRNA_P-littoralis_Contig1442.3.2|Name=mRNA_P-littoralis_Contig1442.3.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6927bp|location=Sequence derived from alignment at P-littoralis_Contig1442:4603..11529- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1442:4603..11529- >mRNA_P-littoralis_Contig1442.3.2 ID=mRNA_P-littoralis_Contig1442.3.2|Name=mRNA_P-littoralis_Contig1442.3.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1149bp|location=Sequence derived from alignment at P-littoralis_Contig1442:4603..11529- (Pylaiella littoralis U1_48)back to top |