mRNA_P-littoralis_Contig144.64.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.64.1
Unique NamemRNA_P-littoralis_Contig144.64.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:196482..202454 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1098
Hectar predicted targeting categoryother localisation
Exons4
Cds size723
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.64.1prot_P-littoralis_Contig144.64.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 196545..202142 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789678.1842577-UTR-P-littoralis_Contig144:196481..1965441680789678.1842577-UTR-P-littoralis_Contig144:196481..196544Pylaiella littoralis U1_48UTRP-littoralis_Contig144 196482..196544 +
1680789678.2354128-UTR-P-littoralis_Contig144:202142..2024541680789678.2354128-UTR-P-littoralis_Contig144:202142..202454Pylaiella littoralis U1_48UTRP-littoralis_Contig144 202143..202454 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789678.1949146-CDS-P-littoralis_Contig144:196544..1965601680789678.1949146-CDS-P-littoralis_Contig144:196544..196560Pylaiella littoralis U1_48CDSP-littoralis_Contig144 196545..196560 +
1680789678.2046967-CDS-P-littoralis_Contig144:197298..1978151680789678.2046967-CDS-P-littoralis_Contig144:197298..197815Pylaiella littoralis U1_48CDSP-littoralis_Contig144 197299..197815 +
1680789678.2176487-CDS-P-littoralis_Contig144:198402..1985061680789678.2176487-CDS-P-littoralis_Contig144:198402..198506Pylaiella littoralis U1_48CDSP-littoralis_Contig144 198403..198506 +
1680789678.2264686-CDS-P-littoralis_Contig144:202056..2021421680789678.2264686-CDS-P-littoralis_Contig144:202056..202142Pylaiella littoralis U1_48CDSP-littoralis_Contig144 202057..202142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.64.1

>prot_P-littoralis_Contig144.64.1 ID=prot_P-littoralis_Contig144.64.1|Name=mRNA_P-littoralis_Contig144.64.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=241bp
MATPEGSNTAAGSGTAAKANDGPPPLDLVAMLCNLPAHGFRRQQQDVDRS
LALEAGALSSYFQALGRGPNSQARSRKVSRDLSRGGVYRHESLAVGKRVR
WMAFVGEGGRKPVFDEKGEDDSIPSEDGRAGVTGRETAVGVTNPKAAVAP
ATTPETGGSSSDPLGEDIQPGPEVIQQRVAWVQGDVLRMMMISPTWGYAF
NAHEMSNFLRLHIVFFTLVVTPGVAHPTTHQVGGCRESKV*
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mRNA from alignment at P-littoralis_Contig144:196482..202454+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.64.1 ID=mRNA_P-littoralis_Contig144.64.1|Name=mRNA_P-littoralis_Contig144.64.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5973bp|location=Sequence derived from alignment at P-littoralis_Contig144:196482..202454+ (Pylaiella littoralis U1_48)
GAATCCCGACCAAGTCGTCCCCATCTCCAGAGGGTCCTCAAGGCCGTCTG
TCCCGGCGGAAGCATGGCAACTCCTGAAGGTGAGGTTGTTACTTAGGTAC
TCACACAAGTCCTCAGTGAAGGTTTGGCTGGCTGTGGTGCCCTGTGGCTC
GAGTTAGCCACGTATTTGTCATGCCGACCAGCTAAGTTAGAACACAGCAG
TCTGGCACCTAAGAGACGTGTTTCTGAGTTCTGCTCTCACTGAGAGCTGT
GACCGATGCTTAGTGGCTTAGGTCCAGCACCGGGTAATTTGAAGCGCTTT
GCTCGTCTGTGATTCCTCAATCGGTTGCGTACAACCCGATTCCGAGCCAA
AACATCATATTTTAGGTACCCTTCCCCAAGATAAAAGCACATCGACCAGA
TGCCCATCAAACTCTAGCTGAGAGGCGTAGACAACCCTCTACAACCTTGA
AAATCCTGAGAGATTCAAAAATGTAGTGGACCTGATGTGTACGGAGGCAA
CGCCACAGAGAGCAAGAGTGTGTGTACACCACAGCAGTAGAAATCGATTT
TTTAGCGTGTAGAGGTTTTGTGCTCGGACAAGTGCCCGCCTATTACCCCG
AAAACAATTGCCCCAGGGGTGTCATAGTTGTGTGTGGGTTCTAAACCTCG
GGCGCAAAATCACAGACGAGCGAAAGTTAGCTGTGGTCAAATAGATTCGT
ATAAAACCGTAAGCATTCGTCAATATACATTAGCGAGAAAAGTCAAATAC
CGCAAACCTAGAAATGTGCTAAAATTCGACTATTTGTCAACTTTTGTATT
GAAATTTATATGTGCAGGTAGCAATACAGCAGCAGGTTCGGGCACAGCAG
CCAAGGCGAACGATGGCCCTCCTCCTCTGGACCTCGTAGCGATGCTGTGC
AATCTCCCGGCACACGGCTTTCGGCGCCAGCAGCAAGACGTAGATAGGTC
ATTGGCGCTCGAAGCTGGGGCACTTAGTTCGTATTTTCAGGCACTGGGCC
GAGGACCAAACTCTCAGGCGAGGAGTAGGAAGGTCTCCAGGGATCTGTCC
AGGGGTGGTGTGTATCGCCACGAGAGTTTGGCAGTAGGCAAGAGGGTCCG
GTGGATGGCCTTTGTTGGTGAAGGAGGAAGAAAACCAGTATTCGACGAGA
AGGGAGAGGATGACTCCATACCATCAGAGGATGGCAGAGCCGGAGTAACG
GGCCGCGAGACTGCTGTTGGAGTAACGAACCCCAAGGCCGCTGTTGCACC
CGCCACCACACCAGAGACGGGAGGCAGTAGTTCTGACCCCTTGGGCGAGG
ACATCCAACCCGGTCCAGAGGTCATACAACAAAGGTACACTTAGTACACG
ATACAGCTGAGCATAATATTATTGGAGTTCATGCGCTCCCATGTAGTTAC
AGTACCAGTTATCGGTACCGTATTTGTCTTCAGCGTCTGCGTACAGCAGC
TGCAGGAGGAGCGGTGGAAATATAATTTGCCTGCTCTTTCTGTACGGCAG
TATTTATACAATAATCTGGTGCTGTTATCAAATTAACATTCCAGCGACCA
TCACACTTGCCCACATTACAACCTCCAACTTTAATCACCTATGAGGTTTG
ATTTACTGGGAAACGCACAACGTCACGCTACAGTATTATCCCATTGCTCC
AAAAGTTTGGGGTCATGGTGACAAATGAATTTTTTATGGGGGGTGTCTCG
GGATATGACTCGGGGGTTCCCCAAACATAGTTAGCACTAAATACCCAGAT
TGGAAGGTACAGGGTGCTCTGGGGAGCGGTGCTGCCGTCAGCCCCGAAAT
TTTTCAGAACTATGTTTGGTTTTGTCCTCTCGCTAATCCGCTGTCTCTCT
TCCCAATTGTCTTTTTGCGGGCGTAATTTACGCTATGTTTCTGTTTTTCG
TGGTGTTGCCCTACCTTTTAGGGTGGCGTGGGTCCAGGGCGACGTTCTAC
GGATGATGATGATCTCCCCGACCTGGGGCTACGCTTTCAACGCGCACGAG
ATGTCTAACTTTCTACGGTTGCACATTGACGACGTTCGTGCAGTTCTACA
AATTTCGCGCTCAGGACACCGTACCACTCAGCACGAGCACGACATGTTCC
TATCCACTTTTGGGGTTTAACGTCATACGCACGACAACAAGCCCTGCTGG
AGCCTTGCAGGGGTGGGGTACCTCTACACACTGGAAGAAGAAGCCTGCAT
GAGACTTCTAAGCACAACGCCTCAGCCCAAATTCTGATGAGCGTACACTG
ACCTACTTTTCGCGCTGATAATTTGTTGCATTGCAAGTGTTGCGTTGGTC
CCAAAGTCTAGCCGGGTAGCGTGTATTTTTTTTTCGTTAGTCGAAAATAT
TTCTTTGCAAAAGGGTGCACAGCCAAGCACAACGCAGTCTCCAGCCGAGT
CAAAAGTGTATTTTCGCTCTCGGGGCGCAACGGCAAATCAGCCACGTCGT
CGACAAAAAAATAAGCAGGAGCCGTTTCAAGGGAACGCAATATATTGGAT
ACATTGGCTTGGATAAAATAAGGGACTCCCGGCCACTCTTCTGTCTTCGA
AAGCCCCCCCGTATCCTGTATTCCCCCGGTGGTGCTGTGTCTACTGCTAC
TGCTGCTGTTGTTGTTTTGTTGTCCTCCCTCTACGCACACCCCCCTTGAA
AACACGAATCCATTTCGACCCATGTGGTTGACTTTGAAGCGTCGGTACTC
CGATCTGTTTATGTTCCGTGTTGCAATATGATATGCTATTTCCGTATGCG
CTGCCGGTTGTTCTGTCACACACCCTATACACAAGCCAATACTGCTGCAC
AACGGTGAAGGTGTGCTGTTCCTTCTTCAAGTTGAAGACGTTCACGACGT
ACGTGTTTCAGAAAGCGCCCACCGCCGTACCTTGTGGCTTGTTGTAGGCA
GGTGAGGTGATGTGATCTAGATCTTCCTCATTTTTGGCTAGTGGATACAG
CAATGCACATTACTCCACATGGATATGGTGCATGCTCCCGCAAAGCTTAT
CCTGACGACGGAGATAAGGGTGGGTGGTTTATATCCGCGCGGAATAGGCT
TTCAAAATACCGAGGTGTCGCGTGCTACCTGCCGCCATGACGAATTAATT
TCGTTTCTTTTTGGTAAAGCCTCGGTGTCCTGCAACAGATATTTCCTGGG
TTAAGGTCGCACTGTGTTCAGTATAAAATAAAAGAGGGGTTATCGAGGAG
TGCCGTTTTGCCACAGGGAACCAAATGACTTGAACATGGATTTGGGGGTT
TGCACAAATGCAGCGTTGTTTGGAGGGGGTAATTTTTTTTTGCAAAAACG
TCGTTTTTGTAGCATTTGGGGCCATCGATTTCTTTTTGGCAACGTGCCCG
ATTAAAAATCTCTGTTGTTGGCCTAGGATATTGTCCGGTAAGCCAGCTTA
TTTCGCGTCCAATTCGTTTGTTGATCGGGAATGCCCACGCGGAGAACGGT
GCCATCGCGCAAACGCGCTTGAGTGTCGAAGCCTGTGTGGGTGTGCACAT
ACTCCGTTCAGTCAGTCAGAGAAGTAACATGATATCGAGAAGAAGCAAGA
TGCTTGTGCGGACGAAAAAATCCTATTCGCCACGCGCTTCATGCACTGAC
CTCATCTCACCGAACATGACCGCCTCAATCTTGCACGTACTATAATATCT
TGTATCATACTATCCAGGCGCACATGACGGTGTACGTGCAGGCAGTCAAG
CTCGTCGTTCAAGCCGAGGGGGCGGTGTTCACGAAGACGGGGAAGCGCAT
CATGGTATCGTCGTCGCATATCGGGCAAGAAAATACGTGAGTTCGACGCG
AGTAGACAATCGAATAGTTACACTGCCTTCAGGGTAGCCCCACAATCTCT
TGATACCAGTGTTAGAGCATAAATCTGTGTCAGTTCACGTACCAGGTAGG
TTGTGCATTGCTCATCCAGTACAAAACTCAACGAATCGTGTGCGCGTGCT
CTTCACCCAACCGGTCTCTCGCAATACGCAGGGGAACCTTGCGACACCTG
GCCTGGCGAGAGAGTGGGCCACCAGCATTCTACTCCCCCTGCGCCAACAA
GGCCGGGGAGAACGTAGCGACGAAGCGCCGATGTCCGGCGTGCGCGGTAC
AGACCCTCGTCAATACCGCCTGTCTACGGGCATTCTGTTTCTGCGTGGTC
ATCGGAACGAACGCTCTCGAGAGCTTCAACGGGAGCATAGCTGCCATGGT
GTCGAAGCGGAGCGACTTCTTCGTCAGTCACGTGGGCCGGGCCCAGCTTG
CTCTATTGAAGAGATGCTATCCCGGAGGATACTCCGCAGTAGTGGCGCAC
CTACGCGCCGATTGTGGACTCCCACCACTGACGGAACGTGCCGCAAGGGA
TACCCTTCTCCATCAGAGAAAGGCGGGTCAGCTCCTAAGCGGCGCTACTG
TATGGACATCCGAGGAGGTCAAGGCCGCTAGTGCCAAAAAATCAAAGCGA
AATCCCAGCGTTCCACCACGCAGACAATCGAGGGCAAGCTTCTCAAAGCT
GCCAACGAAGCCAGGTATGCTGCGCACAACACGCACAGATATCAGGCGGG
AAAGTCTGCTGTGGAGGGGGAGACTCTTGCAGAGGATAGCAGTGGCAAAA
CTGCCAAGAAAAGGAAGAGGGGGGGGGCGGCGCCCAGCGGCCTGTCTGCG
TACGACCGCGGAGGCAGCAGCTCGTCGAGAAACTTGGATGAGAGCATGGT
GAAACCCGCCAAGAAGGCCCGCGCAAAGGGAATGTGCAGGGCATGCGTGG
CATTCGGCATGTCTGGCCCCTGGCTCTTGGGAGAAGGTCACGCCAGGGCC
TCGACCAGAAAATGTCCGCAGGTACAGCAACAGTGGAGTGAAGCCGGAAA
GCCAGAAGCCCACCCGCATACACCAAATTCGCCTACGGCATCTCAAGCGA
CAGCGCGAACCCCCACTGCTGCGCCCAGCAAGCCCACGAGCGCCAACAGC
AAGGCGGCCGCGACACCGGCTAAGGCCCCGGCGAGAAAGCCGACAATCGG
CGCAGGGAAAATCCGCACGAAAGCGAACGCGATGCAACTAAAAAGAGAGA
CAGTTGTGGCGGAGGCCGCGGCTACGCCGTCGAGGTCTACTTCCAGGTCC
AGCGGCAGAACAAGGCACAGACCGGCACGATTTGTGGATGCGGCAGAAGA
GGGGTCCGACGATGACGGCGGCGGTGAAGAGCTACACGAACGTGATTCGG
GGAAAACGGGGAAGGCAAGCGAGGCGAACTACGCTAGCGATTCAAGCGAT
CCGGCGGACGGGGGCGATTGAGGCCATCCGTGAGTCGACCGCGGCGGTGA
GGGGGTGGAGGGGGGTCGGAGGTGGGGGGGATGCTAGACGGCCAAATAAT
TGAGGTTCGTGGCATCCGGGTGGGTGCATAGAGCCAACGTGTGTATCGTT
TCATCTTTTTTTTCCTTGGCCGTACACAAAATACCTCGTGTAATACTTTT
TGTGCCGCGACGTACTTGTTGGGCCTGCGGTCATCCGTGTAATAAATCCC
CTTTCCGTGAACCGACGAGGGTTAGCTAATACCCCTTGGCAGCGCGAACC
TCCGCGCATTTATTGTGCATGCCGCTTGTTTTTTTTACGCTAGTTGTCAC
TCCGGGTGTTGCACATCCTACCACTCACCAAGTAGGCGGGTGCAGGGAAT
CAAAAGTATAGCGAATCCTTGCTTCTTTCGGGGGTGCCGAAGTTTTCTAG
GCTGGAAGCGCGATGGGACTCGAATTTCTGACCCTTTTTTTTTACTATCC
AGTTTCGGTTCAAAAGCTGGCGGGGCACATAGTTCCAAGTTTTCGAAGGG
AGTGTCGACTCTATGATTCGAGTACATATTTGTCACCGTTTTTGTTTTTG
TGGGTATAAAATTGTGCGAGAAACTCGGAGCCACCAGACAGGCCAAGTCC
TTCCTGCTCTGGCCGTGTGAAACTCCACGCTTTGGTTTCAGGCGACACCA
AATAGGCATCTCCTGTTTCACTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:196482..202454+

>mRNA_P-littoralis_Contig144.64.1 ID=mRNA_P-littoralis_Contig144.64.1|Name=mRNA_P-littoralis_Contig144.64.1|organism=Pylaiella littoralis U1_48|type=CDS|length=723bp|location=Sequence derived from alignment at P-littoralis_Contig144:196482..202454+ (Pylaiella littoralis U1_48)
ATGGCAACTCCTGAAGGTAGCAATACAGCAGCAGGTTCGGGCACAGCAGC
CAAGGCGAACGATGGCCCTCCTCCTCTGGACCTCGTAGCGATGCTGTGCA
ATCTCCCGGCACACGGCTTTCGGCGCCAGCAGCAAGACGTAGATAGGTCA
TTGGCGCTCGAAGCTGGGGCACTTAGTTCGTATTTTCAGGCACTGGGCCG
AGGACCAAACTCTCAGGCGAGGAGTAGGAAGGTCTCCAGGGATCTGTCCA
GGGGTGGTGTGTATCGCCACGAGAGTTTGGCAGTAGGCAAGAGGGTCCGG
TGGATGGCCTTTGTTGGTGAAGGAGGAAGAAAACCAGTATTCGACGAGAA
GGGAGAGGATGACTCCATACCATCAGAGGATGGCAGAGCCGGAGTAACGG
GCCGCGAGACTGCTGTTGGAGTAACGAACCCCAAGGCCGCTGTTGCACCC
GCCACCACACCAGAGACGGGAGGCAGTAGTTCTGACCCCTTGGGCGAGGA
CATCCAACCCGGTCCAGAGGTCATACAACAAAGGGTGGCGTGGGTCCAGG
GCGACGTTCTACGGATGATGATGATCTCCCCGACCTGGGGCTACGCTTTC
AACGCGCACGAGATGTCTAACTTTCTACGGTTGCACATTGTTTTTTTTAC
GCTAGTTGTCACTCCGGGTGTTGCACATCCTACCACTCACCAAGTAGGCG
GGTGCAGGGAATCAAAAGTATAG
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