mRNA_P-littoralis_Contig144.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.33.1
Unique NamemRNA_P-littoralis_Contig144.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig144.33.1 vs. uniprot
Match: A0A6H5KHU9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHU9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.780e-8
Identity = 45/129 (34.88%), Postives = 60/129 (46.51%), Query Frame = 2 
Query:  227 GLVSMMDRECLLAMLSAHAAVDSRR------GVGEFGGNKE------------SGDGGGLPKGFLARLASAVDLQGAVADDRPSPEPPDFPHCSASDLRLPKHYNEGCGC--RVF*ISPQVRDEFEVME 553
            GL+SM+D+  L++ML A  AV+  R      G+GE                     GGGLP      LA   D+   + + RP  + PD PHC ASDLR+PK YNE      R F      R+ F ++E
Sbjct:  564 GLISMLDKNTLVSMLEAQRAVEEERREPGGAGIGEXXXXXXXXXXXALAAVGLGAGGGGLPLVCATLLADREDIDAMLRNQRPPKQRPDLPHCQASDLRIPKSYNEAMASENRHFWGDSMKREFFGLLE 692
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KHU9_9PHAE2.780e-834.88Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:91607..97299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1062
Hectar predicted targeting categoryother localisation
Exons2
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.772174-UTR-P-littoralis_Contig144:91606..917751680789677.772174-UTR-P-littoralis_Contig144:91606..91775Pylaiella littoralis U1_48UTRP-littoralis_Contig144 91607..91775 +
1680789677.8049765-UTR-P-littoralis_Contig144:96751..972991680789677.8049765-UTR-P-littoralis_Contig144:96751..97299Pylaiella littoralis U1_48UTRP-littoralis_Contig144 96752..97299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789677.7841961-CDS-P-littoralis_Contig144:91775..917781680789677.7841961-CDS-P-littoralis_Contig144:91775..91778Pylaiella littoralis U1_48CDSP-littoralis_Contig144 91776..91778 +
1680789677.7959669-CDS-P-littoralis_Contig144:96409..967511680789677.7959669-CDS-P-littoralis_Contig144:96409..96751Pylaiella littoralis U1_48CDSP-littoralis_Contig144 96410..96751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.33.1prot_P-littoralis_Contig144.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 91776..96751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.33.1

>prot_P-littoralis_Contig144.33.1 ID=prot_P-littoralis_Contig144.33.1|Name=mRNA_P-littoralis_Contig144.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MLAEAPPEIDDDDDLSGQMGLVSMMDRECLLAMLSAHAAVDSRRGVGEFG
GNKESGDGGGLPKGFLARLASAVDLQGAVADDRPSPEPPDFPHCSASDLR
LPKHYNEGCGCRVF*
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mRNA from alignment at P-littoralis_Contig144:91607..97299+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.33.1 ID=mRNA_P-littoralis_Contig144.33.1|Name=mRNA_P-littoralis_Contig144.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5693bp|location=Sequence derived from alignment at P-littoralis_Contig144:91607..97299+ (Pylaiella littoralis U1_48)
TCACCTGGGGAACGTCAAGTAATGTAAACTATCTTCGTTGGGTTCATATC
TTTACCTCCTGACCGCCGACAGCACAAAACACGCTAGCGATTAGGTATAC
CTTAGGGCTCTCGGCTAGACAGGAGGACCACATCGCGAGAAGCGATGTCG
GGCGAAGATTTTTCAGAAGATGGTGGACAGGGCGACGGGATGGACAACAG
CCTCAACACCAACTTTACACACGACCAAATGGTCACGATCAGGGAGCTTC
TCGCGACTGCGACAGCAACAGCGACCGCCAATGCAACGGCGGCCGCCATT
GAAGCAGCATCTCTGGCCGCGCAAGCTGCGGCTACCTATACAGCAACACC
ACCGCCAAACCCCACATCAACAGCGCAAGCACAACATGCTTTTGCACACG
AACAAGCCCAAGCCCACCAGGAGGACAGAGCCACACACGACATCGAGCGT
ACGGACGGAACCTCATCTGCGGGACAGGACACCGTGGTGCAGCAGCTAAT
CACTGCGCTGGGAAGAATGGGGACAACGCCCAACCAAGGGTCGACGGTTA
GCACGTATAGTCAGGGCAGTAGAGTGGAATTTACTGGAAAGAGGGGGGAA
GATGAGCCGACAATGTTCATGGTAAGGTTTTTTTGTTTCGATCTATGGAG
TTGGAAGATGCGTTTTGCAGGACAGTACCGATCAAGGTAGGAGTGCTGTC
CAGGGAGGAATTGTACGGGCAATTTCACAGACGTGAGGTAGATGCTGCGT
ACAGGGCTTGGAACCTGCTCCTGAACAGTGTGGTAGACGTCGCAATGATG
GTTAGGATGACGGCTGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGTTCAA
AAACTATTACACTCCACAGGCAGATGCTGAGAAAGAAAGAGCACGACAAG
AATGGTATGATTTGCGCCAGGGACTGAACGAAGCACCAAAGCAGTTTTTC
TCCAGGGTAACAGTGCTGGAAAGTAAACTTTGTAGACGTGGGATTGTAAT
GGAGGAGAGAGAAACAAACACGCATGTGATCCGCCGGTTGTCGTCGCTGT
TTAACACGCAAGCCGAAATTTTGCTCGCCAATCCGTTTGCTACCCGCGCG
AATATAGAGAGTGTGGTGCTCAACAAACATGGAGCCATGGAGATGGACTC
GAAGAGGGAGAGAGAGATGGGAGAACAGCTCGCCCTCGTTGCCGCAGGAC
GCGGGATCGGGGGCGGCGGAGGGAACAACGGCGGTGGCAACGGAGGACAC
TTCATGGGGACACCGCATGGAGGGACGCATCAACGACCGCCGTACAGGGC
GCCGCAGCAACAACAGCAGCAACAGAACCAACAGCAGCTGCGGCAACAAC
CGCAAGATCACCAACGGCGCCCCGACTCTCGCCCATTCTGTACCTACCAT
CAGATTTATGGACACAGCAACGAGGAGTGCCACAGGAACGTGCGGCGAGG
GGGCTACGCACAGCAGCAACATGGATTTCGCCAACAGCGTCAGTCGGGTG
GAGGCGCAAGGGGGCAAGGGGTACTGCAGCAACAGCACAACAACGGAGGA
GGAGGTCATCAAGTCCCTGAAAGGTATGGTGCTGGAAGTAGTGGTCCGAG
GTGGGCAGACGCGAAAACTTTGCCTGCGTATCAGGCCCCTGACGGGGGAT
ACAACTACGACAGATACCCGGCGGGCATGTACCGCCCACAAGGAAATGAA
CCCCCTATCCACGGGGCGGATCCACGACAGCGGTGCATCTCGTGTGGTGA
GTTTGGACACATTCACCAATTTTGCCCCGCGAGGACCAAGATACACCCGC
CCGATCCCGGTATAGTCCGACAGCCAACCAGCAACACCAATCCCTGGAAG
CATTCGTACGGCGCTTTTCCCGCCCAAGCGGCTCACGCCATGGTCGAGAC
TTCTGCTGTACAGCAGCAAACACCAGGGGGGCATCAACAACAGCAGCAGC
AGGAATATGCGGCGAGACTGCAGCAGTCGCAGCAGGATGCTCGAATCACA
TCTCAGCAGCCATCACCACCGCAGCAGGCAACCTACCGCTACACAACAGC
AGCCAGCTCCGTCGCTCCTCTCTCTTCTTCGGATCCGTCTCCGGGGCTTC
ATGGGGCAGGGCGCTCACTCATGGCTTTGAGTGTTCCAGAAGGCGAGTTT
GTTTTTTCTGGTGAGGGTTTTGCAGCGAGCGAGATTGATTTTTCTGGTAC
GGGATCATGGGGCAGAGAAGGGGGATGGGAGATGTTGCGCTTACCACTCA
ACAACATAACGGTATTACTCCACCACCCACACTATGGTTTGCCGACAGTG
GTGCGTCCAAGAGTATGACATCTGATCCTAGTTTGATGTACAACATGCGT
GAACCCCCCCCTGGTAGCAGTAGGATAGTGATTGCGGGAGGTGCGACTTT
GCGTGTGGTTGCCTGCGGTGATTTGGATTTGATCATGCATGCACGCACCG
ATTTTTTGGTACGGATGACAAGCGTCTTGCTTGTGGAGGATCTCTCCTTC
AATCTTTTTTCTTTGCACTGGGGACAAAGGAACGGTAGGATTGTGCTAGA
TGAGCAAGGGACACATTTATTCGACGGTCAACTCACGTTTCCGTACAATG
AGACGGGATCTTATTTGCACGCGACTCGCGTGCCTCACCAACCCTCTGCT
TTTGCCGCTGCTACCGCTCTGCAAGCCGCTTCTGGTTTTCCCCCTTCAGG
CAACTCTGTTTTTTCTGAGTCAGGTGTCCAGTCCACCGCTTCGGGTGTGG
TGACCTCCGCTTCCGGTTTCCAGCCCACTGGTTCTGGTGTCGTGTCTTCG
GCTTCTGGCATACCATCCGCCGAGAACGGTGTAGTACCTTGTGCCTCCGA
TTTTTCGACCACCCCTTCAGCTGTAGTACCATTTGATTGTGGTTTCGCTT
TGGACGCTACCTCGGTAGACACTTTGCTGCAGATGCTTGATGCCCGCCCC
GCTTTAGAATTGCTTGAGCGACACATGAGCATGCCCTCCACTGATTTTTT
GTTCGACGAAAGACTGCTGGCCGCTATTCTGCCTGACGTGGATCATTTTT
GTGCGCGCGACCCTGATTTTCTGCCGTTTGCTCTAAACGCCGTCGATGCC
CTTGCTCTCCAGCAAGAAGAGTGGTATGCACTCTTTCCGTATGTAGAAGT
TGAGCTTGAAACTGGGCCGCTTTTTGATGGGATGACTAGCTTTGCTGCGC
TTGCTCCGAGTAAGAAGCCTTATTTTGTAGGCAAACGGCCAACCTCGGAA
GATATAAACGTCTTTCATTGCGGTAACGGCCATCTTGGTCAGCGTTCTCT
TGCAGCCACTGCCAGGTCCCACGGACTTCGCCTCACCAACGATCTTTTGC
CGTGCGAGAGCTGTGTGGCGGCTACAGGGCGTCGGGCTTCATGCCCGCAC
CGGACCACATCGAGAGCAACCGAGCCGTTGGGCACGGTGCTGCTCGATAT
CGCGGGGCCTTTCGAGGCATCGCACGGGGGGTCCATCTACATGGTCGGCT
TCGTCGACAGCTGTTCTCGGCGCGGCCAGGTCTATGGCATGCGCACCAAG
GCGGACCTTCTCGTCTACGTTCAAAAGTTCATCGCGGACATCGGCAAACC
GAAGTGCTTCCGTATGGACAACGCCGGCGAGAATACCAGCCGGCGTTTCG
TGACTTTCTGCGACGAAAACGCCATTCGGCGTGAGTACACCGCGCCGCAC
ACAGGGCAACAAACGCCCCCGTCGAAAGTTTGCTGTGGCGTGTTCTCAAG
GGGGGACACTCTGCAAGGCTGGATATACGGCGGATGTTTCCTTTGCTGGA
TTTTTCAGCGATGGAGCACCTGGGTCCCGATTTTGAGCGGCTGTGGATGG
AGGCAGCTCTTTGGGCGTGCGAATGCATCAATCGCTCTTCTTCTTCGGCG
AACGCGGGCTTGCTTTCGCCGGACGAAGTCTTCTTCGGAAAGCCTCCGCC
GCTTCAAATTGTCCCATTTTTTCAGCCGGGCATGATGCGAGTGGAGCGGG
CGCGCAAGGGTGATGTTCGGGCGGTGCGGTGTTACTATCTGAACGGTGGC
TACAACCACTCATCGGCGTGCGTCAAGGTGCTCAACGCCGAGACATGGGC
CGTGTGCCACACGAAGGACATTGTGTGGACGGTGTCGCAGGTTCGGCCAC
CTGCGGCGATACCGCCCGCAGCCGAGGGGGGACATGGGATCGTCTCCGAG
CTATTACCGCCGCAGGACACCGCTGTTTACACCATCACCACCGCTGCCGA
GCCTGCTCCCGCTACTGCCACTACCGCCGCCGCTCGTGCTGCTGCCGCTC
CAGGGTGCACCGCCGTTCCGCAAATGATCGGCGCTCTCCGCCCCGAGCCT
GCCGCCGCCGAGCCTGCCGCTACTGCCACAACCGCCGCCGCTCGTGCTGC
CGCTCCAGGGTGCACCGCCGTTCCGCAAATGATCGGCGCTCTCCGCCCCG
AGCCTGCTGCCGCCGAGCCTGCCGCTACCGCCACTACCGCCGCCGCTCGT
GTTGCTGCCGCTCCAGGGTGCACCGCCGTTCCGCAAATGATCGGCGCTCT
CCGCCCCGAGCCTGCTGCCGCCGAGCCTGCCGAGCCTGCCGCTTCTGCTG
CTGCCGAGCCTGCTGCCGCAACTGCCGCTACTGCCGCCGCTGCTACTGCT
GCTGCTGCTGCCAATCCGGAGCACGAACCTTTGACTCGGAGGGCGATACG
AGAACTCGCACCCGGGAGGGCGACAGAAGGCATGGCCGACCCTCGGCGGA
TGGGGAGGACGAGATCTTCAACGAGACACCAGGCTCCCTCTCCTCTGCCG
CAGCTGGCGGAAGCACCGCCGGAAATTGATGACGACGATGACCTTTCAGG
GCAGATGGGCCTTGTCTCCATGATGGACAGGGAGTGCCTGCTCGCGATGC
TCTCCGCGCATGCGGCGGTCGACAGCCGCCGGGGTGTTGGGGAGTTTGGG
GGGAACAAAGAGTCTGGAGATGGTGGAGGTTTGCCTAAGGGATTTTTGGC
AAGACTGGCCTCTGCGGTGGATCTGCAGGGTGCCGTGGCGGATGATCGGC
CGTCGCCCGAGCCTCCGGATTTCCCGCACTGCTCTGCAAGCGACTTGAGG
TTGCCAAAGCACTACAACGAAGGATGTGGGTGTAGAGTCTTTTGAATTTC
ACCGCAAGTACGTGATGAATTTGAAGTGATGGAGTTTTTCGGTATTTCTA
TCCATGGGGAGCTATTGTGTTGATTTGGTTTTTGGTTTTTGGAGTTTTTC
GGTATTTCTAGCCATGGGAGGCTATTGTTTTTTATTGTAATTGAGATTTG
GAGTATCGGATCATGGTTTTTGGTTCAAAATATTTTTATTTGGGATGAGT
TTACCAACACTAAAAATACTGCAGTCGTTGGGTTTTACTTTGCATGTTCG
AAACATGATATTTATTTTTCGGGGGATATTATTTGGATGCACTTGTGCGC
AATTGTGATCATGCCACAAGCAGGGGGGATGTTGGAGTACTTGAGGCATG
AAGGGATTTATGTGTGGAAATGGATATTGGTTCGCGGAACTCGGTTCGCG
GAATTCCTCTGTGAGGCTTGGGTTTGGTATTGTGTGTGTTGGATTATTCA
TGCGCATGCGGTTCGGTGTTGGTTCCGCGTTTGTGATGCTTTCGCATGGA
TGCGCAACTACAACTGCAGTTCAATTCAATTCGTATGGATGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:91607..97299+

>mRNA_P-littoralis_Contig144.33.1 ID=mRNA_P-littoralis_Contig144.33.1|Name=mRNA_P-littoralis_Contig144.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig144:91607..97299+ (Pylaiella littoralis U1_48)
ATGCTGGCGGAAGCACCGCCGGAAATTGATGACGACGATGACCTTTCAGG
GCAGATGGGCCTTGTCTCCATGATGGACAGGGAGTGCCTGCTCGCGATGC
TCTCCGCGCATGCGGCGGTCGACAGCCGCCGGGGTGTTGGGGAGTTTGGG
GGGAACAAAGAGTCTGGAGATGGTGGAGGTTTGCCTAAGGGATTTTTGGC
AAGACTGGCCTCTGCGGTGGATCTGCAGGGTGCCGTGGCGGATGATCGGC
CGTCGCCCGAGCCTCCGGATTTCCCGCACTGCTCTGCAAGCGACTTGAGG
TTGCCAAAGCACTACAACGAAGGATGTGGGTGTAGAGTCTTTTGA
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