mRNA_P-littoralis_Contig144.120.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig144.120.1
Unique NamemRNA_P-littoralis_Contig144.120.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig144.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig144contigP-littoralis_Contig144:403020..406498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FZZ2
PFAMsDENN,uDENN
Model size499
Max annot lvl2759|Eukaryota
KEGG koko:K20161
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.99e-14
EggNOG OGsKOG3569@1|root,KOG3569@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size207
COG categoryA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789679.009547-CDS-P-littoralis_Contig144:403019..4031531680789679.009547-CDS-P-littoralis_Contig144:403019..403153Pylaiella littoralis U1_48CDSP-littoralis_Contig144 403020..403153 -
1680789679.0235898-CDS-P-littoralis_Contig144:406135..4062081680789679.0235898-CDS-P-littoralis_Contig144:406135..406208Pylaiella littoralis U1_48CDSP-littoralis_Contig144 406136..406208 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789679.031613-UTR-P-littoralis_Contig144:406208..4064981680789679.031613-UTR-P-littoralis_Contig144:406208..406498Pylaiella littoralis U1_48UTRP-littoralis_Contig144 406209..406498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig144.120.1prot_P-littoralis_Contig144.120.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig144 403020..406208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig144.120.1

>prot_P-littoralis_Contig144.120.1 ID=prot_P-littoralis_Contig144.120.1|Name=mRNA_P-littoralis_Contig144.120.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
MSSPSDVDASEDQYGLPADFSAEEAGLYVNGLAQTCAALRRRIAELESEN
RILRKAGNLCTTQQTPVVT
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mRNA from alignment at P-littoralis_Contig144:403020..406498-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig144.120.1 ID=mRNA_P-littoralis_Contig144.120.1|Name=mRNA_P-littoralis_Contig144.120.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3479bp|location=Sequence derived from alignment at P-littoralis_Contig144:403020..406498- (Pylaiella littoralis U1_48)
CAGCAACAACAGCAGATAGACGACCGGGTGTATACGACGTTGTCATTACG
TACAGCGACAGCCGCTTGTGATCACGCAGGGTGCACTGGCATCCTTGCGT
AGAGCGTCTCTAACCCCCCGTCCCTAGTGTAACCTGCAACAGAAGCAAGC
TTCTCCGGAGACAGAACGAGAGATAACACACGATATACCGCAAGAAGATA
CGACCGCTGTGCGTGTAATCTGCTCACGACCGACAGGCAGCCTAGCGCGC
GTCCCTGTTCGCCATAGCCGAACTAGGGTCTGGCCAATCAATGTCTTCCC
CATCAGATGTGGATGCCTCAGAGGATCAGTATGGGCTTCCAGCGGATTTC
TCTGCCGAAGAAGGTACAGTAAGAAGACCGCCGTAGAGCAGAACAGCGTG
TGATGTGATACAATAAGACCGAGTCACTCTTCTTCCTTGCTTGCTGTTGA
GGTGCGGAATTTTGGTTGGTTTGGCGGTTGGGAGTTTATTCTGAGAAGCT
TCTTCTTCTCTGACATTCTCACCTCCAGGCATGTTTGTGACAAGCCCCCA
CGCCCAGGCCATGCTCTCAGTGTGAAAGGCGGTACGCCTAGGGGTATCGT
AGCAGAGGTGAGGCCGTGCGGCTCCTCTGCACCAAGCAAAGTGGTGAGCG
TCGCGAAAATCAAAATCGCCGCAGCATACCGGTACCTACATACGAAGTAC
GTATATTATACGATAGGAAGGAGAACTTCATGTTGTCCGTTCTGACCCCC
GCAAACCGCCGCCCTTCTTTCCATTTAAAGCCTGTGGCTTGGCTGATGGC
CTGACGTCTATCTACTGCTGTACTGCTATAGCACTGACTAGTATTCAACT
TTGTTCGAAGATCTTTCTATCTGTGGCGTTTCACGTTTCACGGCCTCTGA
TTGGCCAACCTCATGATGTGTGCCCGGAACTAAGAATATTTGCGTTCTCC
GGCAGACTGCACAGACCACCAGCATTGTCTGGATATTGATACTGCTGCCG
TTGCGTTTTTGACCGATAAGTTGCGTTTTTGACCGATGATGCTGCTCTTG
CTGTTGTGTGTATTCCGCGCTACGTATTCGGTGTGGTGAAGTTGTTGGAG
CGCTTGTGGTTCGATTTTTGACGTTATATATACGTCGAATAAACACTGCT
GTAGTGCAGTTGCCGTTCTTGTTGTAGGGTTGTTAGAGCCCGTATTAACG
GAAGGCCAAAAAAACGAAATAGCGAAAACGAAAACGAAATTGGGCTCTGA
TTGGTCGGGGAAAAAAACGAAAGAGGCGTGTTTTCGTTTCAACGTCCTCC
GGGGACGCGTTCCTTCGTTTTCGATTTCGCAAAAATAAAGTGTTTCGGAC
CTTTTTTTTTGTGAAAACGAAAACTAAATGCATGGAGTTTGGTAACCTGG
GAGGCTTGCCCATGAGCCTCCCAGGCAGCGAACTCCTTCACACAGACTGC
GACTGCGGTACACGGCGGTGCAACAGGCACCAACCTGAACAGAGCGAGGC
CCAATCCACACACTACAGCAGCGCAGCAGACAGCGCCGAGCCGTCATACC
CGCCAGTCAGTGCAACAGACAGCACACGGCCGTCTACGATACCCGCACGC
TGACACGATGCATTCCACCGCGTTATTTGAAATTGGGCCCCGCGCGTTCT
GGGTTTACAGCATTTTTGGCGTTATCTCCTCTATTCCGCTGCTCCAGCTC
CTCGCAGCAAAAACGCGATAATACCCAAATGGAGTTTTTTATTTTTTTCC
AGAAGAACGGAGTTATTTCCTTTTTGTTTCCGCTATTTCGTTTTTTTTGG
CCTTCCGTTAATCCCCGCTCTTATTCGACTGAGCGAGTGCGAGGAGCTCG
CTGTGCCCCCCCGGTTGGTGGGTAACCCCCATCAGGTGCATATGTAATCG
TGCTCCTGTCAGGTCTGATTGGTCGGTTATACGCCGCGTGTGGTTTTCCA
ACCAAGGCGTGCCCTTCTTACCAAACTCGCCGCGGAGCGGCGTGATCTTT
CGGCTCCCTGCGGACTTGAGTCGGCTCAGGGTTAGGGTTAGGGTTGAGGT
TGGGTTGGGTCGGGAGTGGCGTAAAATTGAGGTAGAGCCTCTTGGTCAAA
GTTGAATAAAACAAAAACACGCGGGTCAGGGAGTGCACGATTATTGATGC
ATCTGGCAGGTGTAGAGGTTACCCGGTTGGTGAGGGGGCCCCGCTGGAGG
CGCCCTACCGGAGGTGAGAAATTTCGGGTAATTTGGCTATTTCTTATCAC
AATCCGTGCGGAATGGAATGATATTAAGGGGATGAATTTAGCCTTGAGGG
TTCATTAACTTCACCCAAGCCTTCAAAAAATAAATGCGTGGAATTCTTAG
CCGTGCAAGTAAAAAAGAAAAAGAAAAATAAAAGTTTGCGACGCTTGGAA
AGCCTCCACCAGTGACATCACCCACGGCTTGCAGCACACCTACCCTGAAC
AAAAATAAGGGAACCATTTGGCTTTATTCCCATCACAATCCGTGCGAAAT
CGAATGATTTTGAGGTGATGACTCTAGTCTAGGATTGATTATCTTCAACA
CAAGCATTCAATGTGAAAAAAAGAGTGGGATTATATCATATGGCTGTGCA
AAAAAAAAAAAACTTGCAACGATGGGAGAGCCTTCGCGGTTTACACCACT
CGCGAGTCACAGCACATTGTCGACTCAAAAACCAAAACAGCGGCGCCATG
AAGGGGTTGCCCGTGCCAGCGACAGGAGGCACTTCAATGTTATACTCGAG
TGTTTGGCGCAAAAATATTTGTATTTTGGTGCCCTCTCGTGGGAGCAGAA
AGCGATTCCTGCTGAAAAGTGGCCAGTGGGAGGGTTTCATATCCCGACAA
CAACCGGGTACATCTCCGGAAGACGGTCCCTTTTATTTTTTACTTTGAAG
TTTCTTTGATGACACCTAAATGCAGCAGAGTGCAGCGGCACAGGTACAGG
AGTACCGGAAGGTGTAGACTGGCGTCCAGAAATGATGGGATAACAACACA
AGGCACACACACGTGAAGGAGTACCAGTACGCCAAATGTGCATATGTACA
GGCATGCAGCAGTAGGTGGAAGGGAAACCACGTGACAACTTTTTGAGGTC
TGGGAAATCACACACCCGTGTGGTATTCTGTGTTGCTCTACTGTAACGCA
TTCGTAGGAGGTGTACTTGTGACGATACTTCCTGCTGTATGGCATCTTGG
GTGTGGTTTCTCTGTGGTACTGCTGTATGGTTGTGGGTGTGCTATCTGAT
ATCGTCTGCTGACGCTGTACCGCTTGCTGGACGTCTATTCGTCCGGCCTG
CCGGTCTCCTGTCTACCTGCCCGCCCGTGCCTGACTACCGAACAGCTGGA
CTGTACGTCAACGGTCTGGCCCAGACGTGCGCAGCCTTGCGCCGTCGCAT
CGCCGAGCTCGAATCAGAAAATCGCATCCTCCGGAAGGCCGGCAACCTCT
GCACCACGCAGCAAACACCAGTCGTAACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig144:403020..406498-

>mRNA_P-littoralis_Contig144.120.1 ID=mRNA_P-littoralis_Contig144.120.1|Name=mRNA_P-littoralis_Contig144.120.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig144:403020..406498- (Pylaiella littoralis U1_48)
ATGTCTTCCCCATCAGATGTGGATGCCTCAGAGGATCAGTATGGGCTTCC
AGCGGATTTCTCTGCCGAAGAAGCTGGACTGTACGTCAACGGTCTGGCCC
AGACGTGCGCAGCCTTGCGCCGTCGCATCGCCGAGCTCGAATCAGAAAAT
CGCATCCTCCGGAAGGCCGGCAACCTCTGCACCACGCAGCAAACACCAGT
CGTAACG
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