mRNA_P-littoralis_Contig1436.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1436.6.1
Unique NamemRNA_P-littoralis_Contig1436.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 5.330e-14
Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 1
Query:    1 TPGTVDCPLGEDDLVEATSSGRVGGAGEEKIDDGXXXXXXXXXXXXXXXXXGKKGRTDGVKQE-----SEXXXXXXXXXGSPEELGDSNDYPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
            T G+ + P+ EDDLVE+T +   G A EEK D G                 G+KG+T  +K+E      +   XXXX     E+ GD  +YP R   WMH  L+I+C IGRPS SEDPD
Sbjct:  172 TKGSAESPVQEDDLVESTPAADGGKAPEEKADGGAPNEDKPDQE-------GEKGKTAVIKKERNPDDDDASVXXXXVPSEDEQAGDDGEYPPRPDGWMHPLLLIYCFIGRPSDSEDPD 283          
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5K7W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7W8_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 5.870e-8
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 1
Query:  175 GVKQESEXXXXXXXXXGSPEELG-DSNDYPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
            G+K+E E            EE+  +   +P+R   WMHQYL+ FCLIGRP SSEDPD
Sbjct:   68 GMKKEPEDDTPGNGDNAPSEEITREEGGFPQRPNKWMHQYLLTFCLIGRPCSSEDPD 124          
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5JWI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI7_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.280e-7
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 1
Query:  226 SPEELGDSNDYPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
            S E   +   +P+R   WMHQYL+ FCLIGRP SSEDPD
Sbjct:   35 SEEITQEEGGFPQRPNKWMHQYLLTFCLIGRPCSSEDPD 73          
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5KBX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBX2_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.280e-7
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1
Query:  226 SPEELGDSNDYPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
            S E   +   +P+R K WMHQYL+ FCLIGRP SSEDPD
Sbjct:  178 SEEITREEGGFPQRPKKWMHQYLLTFCLIGRPCSSEDPD 216          
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5KE98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE98_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 5.280e-7
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 1
Query:  244 DSNDYPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
            ++  +P+R   WMHQY++ FCLIGRP SSEDPD
Sbjct:   23 EAGGFPQRPNKWMHQYVLTFCLIGRPCSSEDPD 55          
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.680e-7
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1
Query:  223 GSPEELGDSND--YPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
            G+P E  +  D  YP+R   WMH YL+ +CLIGRPSSSEDPD
Sbjct:   81 GAPSEDIEEVDGGYPDRSNKWMHPYLLTYCLIGRPSSSEDPD 122          
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5KF57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF57_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 9.130e-7
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1
Query:  244 DSNDYPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
            +   +P+R   WMHQYL+ FCLIGRP SSEDPD
Sbjct:  168 EEGGFPQRPNKWMHQYLLTFCLIGRPCSSEDPD 200          
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: D7FSK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK1_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 9.380e-7
Identity = 35/106 (33.02%), Postives = 46/106 (43.40%), Query Frame = 1
Query:   31 EDDLVEATSSGRVGGAGEEKIDDGXXXXXXXXXXXXXXXXXGKKGRTDGVKQESEXXXXXXXXXGSPEELGDSND--YPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
            +DDL      G   G  +   +DG                 G      G+K+E           G+P +  +  D  YP+R   WMH YL+ +CLIGRPSSSEDPD
Sbjct:   59 DDDLDNDADDGGAAGLQDNGRNDGESPPGQVEDGGGAEESEGGAPAVGGIKEEP-AVGNQGSGDGAPSDNIEEADGGYPDRPDKWMHPYLLTYCLIGRPSSSEDPD 163          
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.930e-6
Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  247 SNDYPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
            S  YP+R   WMH YL+  CL+GRPSSSEDPD
Sbjct:  116 SGGYPDRPNKWMHPYLLTCCLVGRPSSSEDPD 147          
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5KPB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB5_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.240e-5
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 1
Query:  259 PERLKNWMHQYLMIFCLIGRPSSSEDPD 342
            P+R   WMH YL+ +CLIGRPSSSEDPD
Sbjct:   81 PDRPNKWMHPYLLTYCLIGRPSSSEDPD 108          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE5.330e-1441.18Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7W8_9PHAE5.870e-847.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI7_9PHAE1.280e-758.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBX2_9PHAE1.280e-761.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE98_9PHAE5.280e-760.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWP9_9PHAE5.680e-759.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF57_9PHAE9.130e-763.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK1_ECTSI9.380e-733.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXV2_9PHAE2.930e-665.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPB5_9PHAE1.240e-571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1436contigP-littoralis_Contig1436:17527..18107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size344
Hectar predicted targeting categoryother localisation
Exons3
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789676.2648935-CDS-P-littoralis_Contig1436:17528..176221680789676.2648935-CDS-P-littoralis_Contig1436:17528..17622Pylaiella littoralis U1_48CDSP-littoralis_Contig1436 17529..17622 -
1680789676.2757514-CDS-P-littoralis_Contig1436:17847..179981680789676.2757514-CDS-P-littoralis_Contig1436:17847..17998Pylaiella littoralis U1_48CDSP-littoralis_Contig1436 17848..17998 -
1680789676.2892807-CDS-P-littoralis_Contig1436:18010..181071680789676.2892807-CDS-P-littoralis_Contig1436:18010..18107Pylaiella littoralis U1_48CDSP-littoralis_Contig1436 18011..18107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1436.6.1prot_P-littoralis_Contig1436.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1436 17529..18107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1436.6.1

>prot_P-littoralis_Contig1436.6.1 ID=prot_P-littoralis_Contig1436.6.1|Name=mRNA_P-littoralis_Contig1436.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
TPGTVDCPLGEDDLVEATSSGRVGGAGEEKIDDGGESGGGGAKDTQQGGA
SGKKGRTDGVKQESEDDDGNGNGEGSPEELGDSNDYPERLKNWMHQYLMI
FCLIGRPSSSEDPD
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mRNA from alignment at P-littoralis_Contig1436:17527..18107-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1436.6.1 ID=mRNA_P-littoralis_Contig1436.6.1|Name=mRNA_P-littoralis_Contig1436.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=581bp|location=Sequence derived from alignment at P-littoralis_Contig1436:17527..18107- (Pylaiella littoralis U1_48)
ACCCCTGGCACCGTAGACTGCCCACTCGGGGAGGACGATCTCGTGGAGGC TACATCTAGCGGACGTGTGGGGGGGGCAGGTGAGGAGAAGATTGATGGCT GAGGGGAAGATGGAGGGGAAAGTGGAGGAGGAGGGGCCAAAGACACGCAG CAGGGCGGGGCAAGCGGGAAGAAAGGAAGAACCGATGGTGTCAAGCAGGA GTCGGAAGATGACGATGGGAACGGGAATGGCGAAGGTTCTCCCGAAGAGC TGGGTGATTCTGTTAGATAGACAACATATCCACTGTACTAGCAGTCAGCG CTGACTGCTAGTACAGTGGATATGTTGTCTATCTAACAAAAGTACAACCA GGGTTCGAATCCCTCCGTGGACAATCTTGACGCCTTTTTCTTCTTTCACG AAAAACGAAAGAAAAAGTCAGGGATTACAACCCTGGGGGAAAACCGGAGT CCAACGGCCTAACAGCTGTCTTGGACCCTGGATTCCAACGATTATCCGGA GAGGCTGAAGAACTGGATGCATCAGTACCTCATGATCTTCTGTCTGATCG GAAGGCCAAGTAGCAGCGAGGATCCTGACCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1436:17527..18107-

>mRNA_P-littoralis_Contig1436.6.1 ID=mRNA_P-littoralis_Contig1436.6.1|Name=mRNA_P-littoralis_Contig1436.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig1436:17527..18107- (Pylaiella littoralis U1_48)
ACCCCTGGCACCGTAGACTGCCCACTCGGGGAGGACGATCTCGTGGAGGC
TACATCTAGCGGACGTGTGGGGGGGGCAGGTGAGGAGAAGATTGATGATG
GAGGGGAAAGTGGAGGAGGAGGGGCCAAAGACACGCAGCAGGGCGGGGCA
AGCGGGAAGAAAGGAAGAACCGATGGTGTCAAGCAGGAGTCGGAAGATGA
CGATGGGAACGGGAATGGCGAAGGTTCTCCCGAAGAGCTGGGTGATTCCA
ACGATTATCCGGAGAGGCTGAAGAACTGGATGCATCAGTACCTCATGATC
TTCTGTCTGATCGGAAGGCCAAGTAGCAGCGAGGATCCTGAC
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