mRNA_P-littoralis_Contig1436.6.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE) HSP 1 Score: 76.6 bits (187), Expect = 5.330e-14 Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 1
Query: 1 TPGTVDCPLGEDDLVEATSSGRVGGAGEEKIDDGXXXXXXXXXXXXXXXXXGKKGRTDGVKQE-----SEXXXXXXXXXGSPEELGDSNDYPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
T G+ + P+ EDDLVE+T + G A EEK D G G+KG+T +K+E + XXXX E+ GD +YP R WMH L+I+C IGRPS SEDPD
Sbjct: 172 TKGSAESPVQEDDLVESTPAADGGKAPEEKADGGAPNEDKPDQE-------GEKGKTAVIKKERNPDDDDASVXXXXVPSEDEQAGDDGEYPPRPDGWMHPLLLIYCFIGRPSDSEDPD 283
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5K7W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7W8_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 5.870e-8 Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 1
Query: 175 GVKQESEXXXXXXXXXGSPEELG-DSNDYPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
G+K+E E EE+ + +P+R WMHQYL+ FCLIGRP SSEDPD
Sbjct: 68 GMKKEPEDDTPGNGDNAPSEEITREEGGFPQRPNKWMHQYLLTFCLIGRPCSSEDPD 124
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5JWI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI7_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 1.280e-7 Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 1
Query: 226 SPEELGDSNDYPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
S E + +P+R WMHQYL+ FCLIGRP SSEDPD
Sbjct: 35 SEEITQEEGGFPQRPNKWMHQYLLTFCLIGRPCSSEDPD 73
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5KBX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBX2_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 1.280e-7 Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1
Query: 226 SPEELGDSNDYPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
S E + +P+R K WMHQYL+ FCLIGRP SSEDPD
Sbjct: 178 SEEITREEGGFPQRPKKWMHQYLLTFCLIGRPCSSEDPD 216
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5KE98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE98_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 5.280e-7 Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 1
Query: 244 DSNDYPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
++ +P+R WMHQY++ FCLIGRP SSEDPD
Sbjct: 23 EAGGFPQRPNKWMHQYVLTFCLIGRPCSSEDPD 55
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5JWP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP9_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 5.680e-7 Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1
Query: 223 GSPEELGDSND--YPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
G+P E + D YP+R WMH YL+ +CLIGRPSSSEDPD
Sbjct: 81 GAPSEDIEEVDGGYPDRSNKWMHPYLLTYCLIGRPSSSEDPD 122
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5KF57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF57_9PHAE) HSP 1 Score: 55.8 bits (133), Expect = 9.130e-7 Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1
Query: 244 DSNDYPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
+ +P+R WMHQYL+ FCLIGRP SSEDPD
Sbjct: 168 EEGGFPQRPNKWMHQYLLTFCLIGRPCSSEDPD 200
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: D7FSK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK1_ECTSI) HSP 1 Score: 55.8 bits (133), Expect = 9.380e-7 Identity = 35/106 (33.02%), Postives = 46/106 (43.40%), Query Frame = 1
Query: 31 EDDLVEATSSGRVGGAGEEKIDDGXXXXXXXXXXXXXXXXXGKKGRTDGVKQESEXXXXXXXXXGSPEELGDSND--YPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
+DDL G G + +DG G G+K+E G+P + + D YP+R WMH YL+ +CLIGRPSSSEDPD
Sbjct: 59 DDDLDNDADDGGAAGLQDNGRNDGESPPGQVEDGGGAEESEGGAPAVGGIKEEP-AVGNQGSGDGAPSDNIEEADGGYPDRPDKWMHPYLLTYCLIGRPSSSEDPD 163
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5KXV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXV2_9PHAE) HSP 1 Score: 54.3 bits (129), Expect = 2.930e-6 Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 1
Query: 247 SNDYPERLKNWMHQYLMIFCLIGRPSSSEDPD 342
S YP+R WMH YL+ CL+GRPSSSEDPD
Sbjct: 116 SGGYPDRPNKWMHPYLLTCCLVGRPSSSEDPD 147
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Match: A0A6H5KPB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB5_9PHAE) HSP 1 Score: 52.8 bits (125), Expect = 1.240e-5 Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 1
Query: 259 PERLKNWMHQYLMIFCLIGRPSSSEDPD 342
P+R WMH YL+ +CLIGRPSSSEDPD
Sbjct: 81 PDRPNKWMHPYLLTYCLIGRPSSSEDPD 108 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1436.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1436.6.1 >prot_P-littoralis_Contig1436.6.1 ID=prot_P-littoralis_Contig1436.6.1|Name=mRNA_P-littoralis_Contig1436.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp TPGTVDCPLGEDDLVEATSSGRVGGAGEEKIDDGGESGGGGAKDTQQGGAback to top mRNA from alignment at P-littoralis_Contig1436:17527..18107- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1436.6.1 ID=mRNA_P-littoralis_Contig1436.6.1|Name=mRNA_P-littoralis_Contig1436.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=581bp|location=Sequence derived from alignment at P-littoralis_Contig1436:17527..18107- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1436:17527..18107- >mRNA_P-littoralis_Contig1436.6.1 ID=mRNA_P-littoralis_Contig1436.6.1|Name=mRNA_P-littoralis_Contig1436.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig1436:17527..18107- (Pylaiella littoralis U1_48)back to top |